Strain Fitness in Pseudomonas simiae WCS417 around PS417_01315

Experiment: D-Galacturonic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01310 and PS417_01315 are separated by 36 nucleotidesPS417_01315 and PS417_01320 overlap by 4 nucleotidesPS417_01320 and PS417_01325 overlap by 4 nucleotides PS417_01310: PS417_01310 - ATPase, at 283,616 to 285,424 _01310 PS417_01315: PS417_01315 - dTDP-4-dehydrorhamnose reductase, at 285,461 to 286,330 _01315 PS417_01320: PS417_01320 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 286,327 to 286,872 _01320 PS417_01325: PS417_01325 - glucose-1-phosphate thymidylyltransferase, at 286,869 to 287,744 _01325 Position (kb) 285 286 287Strain fitness (log2 ratio) -1 0 1at 284.941 kb on - strand, within PS417_01310at 285.102 kb on + strand, within PS417_01310at 285.456 kb on + strandat 285.457 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C)
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284,941 - PS417_01310 0.73 -0.3
285,102 + PS417_01310 0.82 -0.1
285,456 + -0.0
285,457 - +0.9

Or see this region's nucleotide sequence