Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4618 and Echvi_4619 overlap by 11 nucleotides Echvi_4619 and Echvi_4620 overlap by 1 nucleotides Echvi_4620 and Echvi_4621 are separated by 6 nucleotides Echvi_4621 and Echvi_4622 are separated by 11 nucleotides
Echvi_4618: Echvi_4618 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 5,526,130 to 5,526,942
_4618
Echvi_4619: Echvi_4619 - Glycosyltransferases, probably involved in cell wall biogenesis, at 5,526,932 to 5,527,882
_4619
Echvi_4620: Echvi_4620 - Glycosyltransferases involved in cell wall biogenesis, at 5,527,882 to 5,528,844
_4620
Echvi_4621: Echvi_4621 - hypothetical protein, at 5,528,851 to 5,529,396
_4621
Echvi_4622: Echvi_4622 - hypothetical protein, at 5,529,408 to 5,529,920
_4622
Position (kb) 5527
5528
5529 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5526.913 kb on + strand at 5526.933 kb on + strand at 5526.934 kb on - strand at 5526.940 kb on + strand at 5526.941 kb on - strand at 5526.944 kb on + strand at 5526.944 kb on + strand at 5527.915 kb on - strand at 5527.915 kb on - strand at 5528.188 kb on - strand, within Echvi_4620 at 5528.814 kb on - strand at 5528.849 kb on + strand at 5528.886 kb on + strand at 5528.920 kb on + strand, within Echvi_4621 at 5528.943 kb on + strand, within Echvi_4621 at 5528.963 kb on + strand, within Echvi_4621 at 5528.964 kb on - strand, within Echvi_4621 at 5528.964 kb on - strand, within Echvi_4621 at 5529.051 kb on + strand, within Echvi_4621 at 5529.076 kb on + strand, within Echvi_4621 at 5529.076 kb on + strand, within Echvi_4621 at 5529.097 kb on + strand, within Echvi_4621 at 5529.098 kb on - strand, within Echvi_4621 at 5529.105 kb on + strand, within Echvi_4621 at 5529.105 kb on + strand, within Echvi_4621 at 5529.105 kb on + strand, within Echvi_4621 at 5529.106 kb on - strand, within Echvi_4621 at 5529.106 kb on - strand, within Echvi_4621 at 5529.106 kb on - strand, within Echvi_4621 at 5529.107 kb on + strand, within Echvi_4621 at 5529.107 kb on + strand, within Echvi_4621 at 5529.107 kb on + strand, within Echvi_4621 at 5529.107 kb on + strand, within Echvi_4621 at 5529.108 kb on - strand, within Echvi_4621 at 5529.156 kb on + strand, within Echvi_4621 at 5529.157 kb on - strand, within Echvi_4621 at 5529.195 kb on - strand, within Echvi_4621 at 5529.220 kb on - strand, within Echvi_4621 at 5529.236 kb on - strand, within Echvi_4621 at 5529.249 kb on - strand, within Echvi_4621 at 5529.249 kb on - strand, within Echvi_4621 at 5529.250 kb on + strand, within Echvi_4621 at 5529.251 kb on - strand, within Echvi_4621 at 5529.254 kb on - strand, within Echvi_4621 at 5529.254 kb on - strand, within Echvi_4621 at 5529.301 kb on + strand, within Echvi_4621 at 5529.301 kb on + strand, within Echvi_4621 at 5529.301 kb on + strand, within Echvi_4621 at 5529.301 kb on + strand, within Echvi_4621 at 5529.309 kb on - strand, within Echvi_4621 at 5529.337 kb on + strand, within Echvi_4621 at 5529.443 kb on + strand at 5529.566 kb on + strand, within Echvi_4622 at 5529.569 kb on + strand, within Echvi_4622 at 5529.570 kb on - strand, within Echvi_4622 at 5529.570 kb on - strand, within Echvi_4622 at 5529.571 kb on + strand, within Echvi_4622 at 5529.571 kb on + strand, within Echvi_4622 at 5529.572 kb on - strand, within Echvi_4622 at 5529.592 kb on + strand, within Echvi_4622 at 5529.592 kb on + strand, within Echvi_4622 at 5529.613 kb on + strand, within Echvi_4622 at 5529.613 kb on + strand, within Echvi_4622 at 5529.614 kb on - strand, within Echvi_4622 at 5529.614 kb on - strand, within Echvi_4622 at 5529.625 kb on - strand, within Echvi_4622 at 5529.692 kb on + strand, within Echvi_4622 at 5529.770 kb on + strand, within Echvi_4622 at 5529.804 kb on + strand, within Echvi_4622 at 5529.805 kb on - strand, within Echvi_4622 at 5529.805 kb on - strand, within Echvi_4622 at 5529.812 kb on + strand, within Echvi_4622 at 5529.835 kb on - strand, within Echvi_4622
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 5,526,913 + +0.1 5,526,933 + -0.2 5,526,934 - -0.9 5,526,940 + +1.3 5,526,941 - -2.9 5,526,944 + +0.8 5,526,944 + +0.4 5,527,915 - +0.3 5,527,915 - +0.4 5,528,188 - Echvi_4620 0.32 +1.0 5,528,814 - -0.6 5,528,849 + +1.1 5,528,886 + +0.5 5,528,920 + Echvi_4621 0.13 +2.0 5,528,943 + Echvi_4621 0.17 -1.1 5,528,963 + Echvi_4621 0.21 +1.4 5,528,964 - Echvi_4621 0.21 -0.3 5,528,964 - Echvi_4621 0.21 +0.1 5,529,051 + Echvi_4621 0.37 +2.2 5,529,076 + Echvi_4621 0.41 +0.9 5,529,076 + Echvi_4621 0.41 +2.5 5,529,097 + Echvi_4621 0.45 +1.1 5,529,098 - Echvi_4621 0.45 -0.7 5,529,105 + Echvi_4621 0.47 +1.3 5,529,105 + Echvi_4621 0.47 +0.8 5,529,105 + Echvi_4621 0.47 +0.0 5,529,106 - Echvi_4621 0.47 -1.5 5,529,106 - Echvi_4621 0.47 -0.6 5,529,106 - Echvi_4621 0.47 -0.9 5,529,107 + Echvi_4621 0.47 +0.9 5,529,107 + Echvi_4621 0.47 +1.9 5,529,107 + Echvi_4621 0.47 +1.2 5,529,107 + Echvi_4621 0.47 +0.6 5,529,108 - Echvi_4621 0.47 -2.1 5,529,156 + Echvi_4621 0.56 +0.8 5,529,157 - Echvi_4621 0.56 +0.7 5,529,195 - Echvi_4621 0.63 +0.9 5,529,220 - Echvi_4621 0.68 -0.6 5,529,236 - Echvi_4621 0.71 +0.9 5,529,249 - Echvi_4621 0.73 +1.2 5,529,249 - Echvi_4621 0.73 -0.5 5,529,250 + Echvi_4621 0.73 +0.9 5,529,251 - Echvi_4621 0.73 -0.4 5,529,254 - Echvi_4621 0.74 -0.2 5,529,254 - Echvi_4621 0.74 -0.2 5,529,301 + Echvi_4621 0.82 +2.2 5,529,301 + Echvi_4621 0.82 +1.9 5,529,301 + Echvi_4621 0.82 +1.6 5,529,301 + Echvi_4621 0.82 +0.8 5,529,309 - Echvi_4621 0.84 -2.9 5,529,337 + Echvi_4621 0.89 +1.7 5,529,443 + +2.7 5,529,566 + Echvi_4622 0.31 +1.7 5,529,569 + Echvi_4622 0.31 +2.2 5,529,570 - Echvi_4622 0.32 +2.4 5,529,570 - Echvi_4622 0.32 +3.4 5,529,571 + Echvi_4622 0.32 +3.5 5,529,571 + Echvi_4622 0.32 +2.9 5,529,572 - Echvi_4622 0.32 +3.1 5,529,592 + Echvi_4622 0.36 +2.7 5,529,592 + Echvi_4622 0.36 +2.6 5,529,613 + Echvi_4622 0.40 +2.8 5,529,613 + Echvi_4622 0.40 +3.2 5,529,614 - Echvi_4622 0.40 +1.9 5,529,614 - Echvi_4622 0.40 +2.8 5,529,625 - Echvi_4622 0.42 +2.5 5,529,692 + Echvi_4622 0.55 +2.5 5,529,770 + Echvi_4622 0.71 +2.0 5,529,804 + Echvi_4622 0.77 +3.5 5,529,805 - Echvi_4622 0.77 +2.8 5,529,805 - Echvi_4622 0.77 +3.7 5,529,812 + Echvi_4622 0.79 +2.7 5,529,835 - Echvi_4622 0.83 +3.0
Or see this region's nucleotide sequence