Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4575 and Echvi_4576 are separated by 174 nucleotides Echvi_4576 and Echvi_4577 are separated by 894 nucleotides
Echvi_4575: Echvi_4575 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 5,481,698 to 5,483,017
_4575
Echvi_4576: Echvi_4576 - FOG: CheY-like receiver, at 5,483,192 to 5,483,569
_4576
Echvi_4577: Echvi_4577 - hypothetical protein, at 5,484,464 to 5,484,814
_4577
Position (kb)
5483
5484 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 5482.192 kb on + strand, within Echvi_4575 at 5482.192 kb on + strand, within Echvi_4575 at 5482.193 kb on - strand, within Echvi_4575 at 5482.193 kb on - strand, within Echvi_4575 at 5482.204 kb on + strand, within Echvi_4575 at 5482.329 kb on + strand, within Echvi_4575 at 5482.377 kb on + strand, within Echvi_4575 at 5482.431 kb on + strand, within Echvi_4575 at 5482.432 kb on - strand, within Echvi_4575 at 5482.505 kb on + strand, within Echvi_4575 at 5482.541 kb on + strand, within Echvi_4575 at 5482.623 kb on + strand, within Echvi_4575 at 5482.653 kb on + strand, within Echvi_4575 at 5482.653 kb on + strand, within Echvi_4575 at 5482.653 kb on + strand, within Echvi_4575 at 5482.653 kb on + strand, within Echvi_4575 at 5482.653 kb on + strand, within Echvi_4575 at 5482.653 kb on + strand, within Echvi_4575 at 5482.654 kb on - strand, within Echvi_4575 at 5482.654 kb on - strand, within Echvi_4575 at 5482.654 kb on - strand, within Echvi_4575 at 5482.654 kb on - strand, within Echvi_4575 at 5482.654 kb on - strand, within Echvi_4575 at 5482.654 kb on - strand, within Echvi_4575 at 5482.914 kb on + strand at 5482.914 kb on + strand at 5482.965 kb on + strand at 5483.134 kb on + strand at 5483.162 kb on - strand at 5483.191 kb on + strand at 5483.191 kb on + strand at 5483.334 kb on - strand, within Echvi_4576 at 5483.334 kb on - strand, within Echvi_4576 at 5483.439 kb on + strand, within Echvi_4576 at 5483.439 kb on + strand, within Echvi_4576 at 5483.440 kb on - strand, within Echvi_4576 at 5483.496 kb on - strand, within Echvi_4576 at 5483.496 kb on - strand, within Echvi_4576 at 5483.502 kb on - strand, within Echvi_4576 at 5483.503 kb on + strand, within Echvi_4576 at 5483.503 kb on + strand, within Echvi_4576 at 5483.503 kb on + strand, within Echvi_4576 at 5483.504 kb on - strand, within Echvi_4576 at 5483.547 kb on + strand at 5483.555 kb on + strand at 5483.556 kb on - strand at 5483.556 kb on - strand at 5483.557 kb on + strand at 5483.558 kb on - strand at 5483.558 kb on - strand at 5483.558 kb on - strand at 5483.558 kb on - strand at 5483.574 kb on + strand at 5483.576 kb on + strand at 5483.576 kb on + strand at 5483.576 kb on + strand at 5483.576 kb on + strand at 5483.577 kb on - strand at 5483.577 kb on - strand at 5483.577 kb on - strand at 5483.595 kb on - strand at 5483.598 kb on + strand at 5483.619 kb on + strand at 5483.619 kb on + strand at 5483.629 kb on - strand at 5483.629 kb on - strand at 5483.632 kb on + strand at 5483.632 kb on + strand at 5483.702 kb on + strand at 5483.703 kb on - strand at 5483.750 kb on + strand at 5483.800 kb on + strand at 5483.817 kb on - strand at 5483.886 kb on + strand at 5483.886 kb on + strand at 5483.887 kb on - strand at 5483.919 kb on - strand at 5483.947 kb on + strand at 5483.947 kb on + strand at 5483.948 kb on - strand at 5483.948 kb on - strand at 5483.948 kb on - strand at 5483.973 kb on + strand at 5483.973 kb on + strand at 5483.974 kb on - strand at 5483.977 kb on + strand at 5483.977 kb on + strand at 5484.058 kb on + strand at 5484.059 kb on - strand at 5484.103 kb on - strand at 5484.165 kb on + strand at 5484.269 kb on - strand at 5484.356 kb on - strand at 5484.356 kb on - strand at 5484.356 kb on - strand at 5484.414 kb on - strand at 5484.414 kb on - strand at 5484.488 kb on + strand at 5484.489 kb on - strand at 5484.489 kb on - strand at 5484.511 kb on - strand, within Echvi_4577
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 5,482,192 + Echvi_4575 0.37 -0.8 5,482,192 + Echvi_4575 0.37 -0.6 5,482,193 - Echvi_4575 0.38 -3.0 5,482,193 - Echvi_4575 0.38 +0.5 5,482,204 + Echvi_4575 0.38 +0.9 5,482,329 + Echvi_4575 0.48 +1.7 5,482,377 + Echvi_4575 0.51 +1.0 5,482,431 + Echvi_4575 0.56 +0.8 5,482,432 - Echvi_4575 0.56 +0.1 5,482,505 + Echvi_4575 0.61 -0.4 5,482,541 + Echvi_4575 0.64 -0.6 5,482,623 + Echvi_4575 0.70 +2.1 5,482,653 + Echvi_4575 0.72 -1.8 5,482,653 + Echvi_4575 0.72 +0.4 5,482,653 + Echvi_4575 0.72 -1.9 5,482,653 + Echvi_4575 0.72 -2.4 5,482,653 + Echvi_4575 0.72 -0.3 5,482,653 + Echvi_4575 0.72 -2.2 5,482,654 - Echvi_4575 0.72 -0.4 5,482,654 - Echvi_4575 0.72 -0.7 5,482,654 - Echvi_4575 0.72 +0.4 5,482,654 - Echvi_4575 0.72 +1.4 5,482,654 - Echvi_4575 0.72 -0.8 5,482,654 - Echvi_4575 0.72 -0.9 5,482,914 + -2.0 5,482,914 + -2.7 5,482,965 + -0.2 5,483,134 + -2.9 5,483,162 - -0.5 5,483,191 + -0.8 5,483,191 + -1.0 5,483,334 - Echvi_4576 0.38 +1.3 5,483,334 - Echvi_4576 0.38 -0.3 5,483,439 + Echvi_4576 0.65 -2.7 5,483,439 + Echvi_4576 0.65 -2.0 5,483,440 - Echvi_4576 0.66 -1.8 5,483,496 - Echvi_4576 0.80 +0.0 5,483,496 - Echvi_4576 0.80 +0.0 5,483,502 - Echvi_4576 0.82 -1.4 5,483,503 + Echvi_4576 0.82 -2.5 5,483,503 + Echvi_4576 0.82 -2.4 5,483,503 + Echvi_4576 0.82 -0.2 5,483,504 - Echvi_4576 0.83 -0.0 5,483,547 + -0.1 5,483,555 + -1.3 5,483,556 - +0.2 5,483,556 - -0.3 5,483,557 + -1.4 5,483,558 - +0.9 5,483,558 - -2.1 5,483,558 - -0.5 5,483,558 - -0.6 5,483,574 + -1.9 5,483,576 + -3.0 5,483,576 + -2.2 5,483,576 + -3.8 5,483,576 + -3.2 5,483,577 - +0.7 5,483,577 - -0.6 5,483,577 - -1.6 5,483,595 - +0.2 5,483,598 + -2.0 5,483,619 + -1.5 5,483,619 + -2.2 5,483,629 - +0.5 5,483,629 - +1.1 5,483,632 + -0.3 5,483,632 + -2.5 5,483,702 + -1.6 5,483,703 - -2.4 5,483,750 + -1.9 5,483,800 + -1.8 5,483,817 - +0.1 5,483,886 + +0.2 5,483,886 + +0.3 5,483,887 - -0.1 5,483,919 - -0.1 5,483,947 + +0.4 5,483,947 + +0.0 5,483,948 - -0.3 5,483,948 - -0.0 5,483,948 - +0.2 5,483,973 + +0.3 5,483,973 + -1.3 5,483,974 - +1.0 5,483,977 + -1.1 5,483,977 + -0.2 5,484,058 + -0.3 5,484,059 - -0.2 5,484,103 - -0.5 5,484,165 + -1.6 5,484,269 - +0.0 5,484,356 - +0.1 5,484,356 - -0.9 5,484,356 - +0.5 5,484,414 - -0.8 5,484,414 - +0.3 5,484,488 + +0.1 5,484,489 - +2.3 5,484,489 - +0.3 5,484,511 - Echvi_4577 0.13 -2.1
Or see this region's nucleotide sequence