Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4475

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4473 and Echvi_4474 overlap by 4 nucleotidesEchvi_4474 and Echvi_4475 are separated by 2 nucleotidesEchvi_4475 and Echvi_4476 are separated by 513 nucleotidesEchvi_4476 and Echvi_4477 are separated by 102 nucleotides Echvi_4473: Echvi_4473 - Fe2+/Zn2+ uptake regulation proteins, at 5,350,170 to 5,350,592 _4473 Echvi_4474: Echvi_4474 - hypothetical protein, at 5,350,589 to 5,351,140 _4474 Echvi_4475: Echvi_4475 - Divergent AAA domain., at 5,351,143 to 5,351,532 _4475 Echvi_4476: Echvi_4476 - Nitrogen regulatory protein PII, at 5,352,046 to 5,352,387 _4476 Echvi_4477: Echvi_4477 - RND family efflux transporter, MFP subunit, at 5,352,490 to 5,353,713 _4477 Position (kb) 5351 5352Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5350.259 kb on + strand, within Echvi_4473at 5350.259 kb on + strand, within Echvi_4473at 5350.259 kb on + strand, within Echvi_4473at 5350.260 kb on - strand, within Echvi_4473at 5350.261 kb on + strand, within Echvi_4473at 5350.261 kb on + strand, within Echvi_4473at 5350.262 kb on - strand, within Echvi_4473at 5350.267 kb on + strand, within Echvi_4473at 5350.268 kb on - strand, within Echvi_4473at 5350.337 kb on + strand, within Echvi_4473at 5350.338 kb on - strand, within Echvi_4473at 5350.360 kb on + strand, within Echvi_4473at 5350.361 kb on - strand, within Echvi_4473at 5350.361 kb on - strand, within Echvi_4473at 5350.361 kb on - strand, within Echvi_4473at 5350.364 kb on + strand, within Echvi_4473at 5350.364 kb on + strand, within Echvi_4473at 5350.365 kb on - strand, within Echvi_4473at 5350.365 kb on - strand, within Echvi_4473at 5350.365 kb on - strand, within Echvi_4473at 5350.391 kb on + strand, within Echvi_4473at 5350.391 kb on + strand, within Echvi_4473at 5350.392 kb on - strand, within Echvi_4473at 5350.432 kb on + strand, within Echvi_4473at 5350.439 kb on + strand, within Echvi_4473at 5350.439 kb on + strand, within Echvi_4473at 5350.440 kb on - strand, within Echvi_4473at 5350.440 kb on - strand, within Echvi_4473at 5350.445 kb on + strand, within Echvi_4473at 5350.470 kb on + strand, within Echvi_4473at 5350.470 kb on + strand, within Echvi_4473at 5350.470 kb on + strand, within Echvi_4473at 5350.471 kb on - strand, within Echvi_4473at 5350.471 kb on - strand, within Echvi_4473at 5350.486 kb on - strand, within Echvi_4473at 5350.492 kb on - strand, within Echvi_4473at 5350.511 kb on - strand, within Echvi_4473at 5350.515 kb on + strand, within Echvi_4473at 5350.515 kb on + strand, within Echvi_4473at 5350.592 kb on + strandat 5350.611 kb on - strandat 5350.611 kb on - strandat 5350.611 kb on - strandat 5350.613 kb on + strandat 5350.646 kb on + strand, within Echvi_4474at 5350.777 kb on + strand, within Echvi_4474at 5350.816 kb on + strand, within Echvi_4474at 5350.817 kb on - strand, within Echvi_4474at 5350.820 kb on + strand, within Echvi_4474at 5350.837 kb on + strand, within Echvi_4474at 5350.930 kb on + strand, within Echvi_4474at 5350.948 kb on + strand, within Echvi_4474at 5350.948 kb on + strand, within Echvi_4474at 5350.948 kb on + strand, within Echvi_4474at 5350.949 kb on - strand, within Echvi_4474at 5350.949 kb on - strand, within Echvi_4474at 5350.977 kb on + strand, within Echvi_4474at 5350.977 kb on + strand, within Echvi_4474at 5351.050 kb on + strand, within Echvi_4474at 5351.119 kb on + strandat 5351.119 kb on + strandat 5351.123 kb on - strandat 5351.123 kb on - strandat 5351.188 kb on + strand, within Echvi_4475at 5351.190 kb on + strand, within Echvi_4475at 5351.190 kb on + strand, within Echvi_4475at 5351.217 kb on + strand, within Echvi_4475at 5351.223 kb on + strand, within Echvi_4475at 5351.223 kb on + strand, within Echvi_4475at 5351.256 kb on - strand, within Echvi_4475at 5351.256 kb on - strand, within Echvi_4475at 5351.256 kb on - strand, within Echvi_4475at 5351.277 kb on + strand, within Echvi_4475at 5351.277 kb on + strand, within Echvi_4475at 5351.315 kb on + strand, within Echvi_4475at 5351.329 kb on + strand, within Echvi_4475at 5351.342 kb on + strand, within Echvi_4475at 5351.343 kb on - strand, within Echvi_4475at 5351.377 kb on + strand, within Echvi_4475at 5351.377 kb on + strand, within Echvi_4475at 5351.377 kb on + strand, within Echvi_4475at 5351.378 kb on - strand, within Echvi_4475at 5351.378 kb on - strand, within Echvi_4475at 5351.378 kb on - strand, within Echvi_4475at 5351.379 kb on + strand, within Echvi_4475at 5351.379 kb on + strand, within Echvi_4475at 5351.379 kb on + strand, within Echvi_4475at 5351.379 kb on + strand, within Echvi_4475at 5351.379 kb on + strand, within Echvi_4475at 5351.379 kb on + strand, within Echvi_4475at 5351.380 kb on - strand, within Echvi_4475at 5351.380 kb on - strand, within Echvi_4475at 5351.380 kb on - strand, within Echvi_4475at 5351.382 kb on - strand, within Echvi_4475at 5351.497 kb on - strandat 5351.596 kb on - strandat 5351.596 kb on - strandat 5351.651 kb on + strandat 5351.651 kb on + strandat 5351.651 kb on + strandat 5351.651 kb on + strandat 5351.651 kb on + strandat 5351.651 kb on + strandat 5351.652 kb on - strandat 5351.652 kb on - strandat 5351.659 kb on - strandat 5351.659 kb on - strandat 5351.664 kb on + strandat 5351.717 kb on + strandat 5351.718 kb on - strandat 5351.718 kb on - strandat 5351.787 kb on - strandat 5351.787 kb on - strandat 5351.790 kb on + strandat 5351.791 kb on - strandat 5351.809 kb on + strandat 5351.809 kb on + strandat 5351.809 kb on + strandat 5351.810 kb on - strandat 5351.819 kb on + strandat 5351.820 kb on - strandat 5351.867 kb on - strandat 5351.874 kb on - strandat 5351.874 kb on - strandat 5351.874 kb on - strandat 5351.971 kb on + strandat 5351.973 kb on + strandat 5351.973 kb on + strandat 5351.973 kb on + strandat 5351.974 kb on - strandat 5351.974 kb on - strandat 5351.975 kb on + strandat 5351.975 kb on + strandat 5351.975 kb on + strandat 5351.975 kb on + strandat 5351.975 kb on + strandat 5351.975 kb on + strandat 5352.032 kb on - strandat 5352.043 kb on + strandat 5352.044 kb on - strandat 5352.048 kb on - strandat 5352.055 kb on - strandat 5352.085 kb on + strand, within Echvi_4476at 5352.086 kb on - strand, within Echvi_4476at 5352.093 kb on - strand, within Echvi_4476at 5352.116 kb on + strand, within Echvi_4476at 5352.117 kb on - strand, within Echvi_4476at 5352.117 kb on - strand, within Echvi_4476at 5352.214 kb on + strand, within Echvi_4476at 5352.214 kb on + strand, within Echvi_4476at 5352.215 kb on - strand, within Echvi_4476at 5352.231 kb on + strand, within Echvi_4476at 5352.232 kb on - strand, within Echvi_4476at 5352.270 kb on + strand, within Echvi_4476at 5352.303 kb on + strand, within Echvi_4476at 5352.303 kb on + strand, within Echvi_4476at 5352.304 kb on - strand, within Echvi_4476at 5352.413 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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5,350,259 + Echvi_4473 0.21 -1.1
5,350,259 + Echvi_4473 0.21 -0.1
5,350,259 + Echvi_4473 0.21 +1.1
5,350,260 - Echvi_4473 0.21 -0.7
5,350,261 + Echvi_4473 0.22 +1.3
5,350,261 + Echvi_4473 0.22 -2.0
5,350,262 - Echvi_4473 0.22 -3.7
5,350,267 + Echvi_4473 0.23 +0.2
5,350,268 - Echvi_4473 0.23 +0.2
5,350,337 + Echvi_4473 0.39 -1.4
5,350,338 - Echvi_4473 0.40 -2.0
5,350,360 + Echvi_4473 0.45 -0.9
5,350,361 - Echvi_4473 0.45 -0.8
5,350,361 - Echvi_4473 0.45 -2.7
5,350,361 - Echvi_4473 0.45 +0.2
5,350,364 + Echvi_4473 0.46 +0.5
5,350,364 + Echvi_4473 0.46 +0.2
5,350,365 - Echvi_4473 0.46 -3.2
5,350,365 - Echvi_4473 0.46 -1.8
5,350,365 - Echvi_4473 0.46 -1.2
5,350,391 + Echvi_4473 0.52 -0.9
5,350,391 + Echvi_4473 0.52 -1.6
5,350,392 - Echvi_4473 0.52 -3.1
5,350,432 + Echvi_4473 0.62 +0.7
5,350,439 + Echvi_4473 0.64 -0.2
5,350,439 + Echvi_4473 0.64 +0.3
5,350,440 - Echvi_4473 0.64 -2.0
5,350,440 - Echvi_4473 0.64 -0.3
5,350,445 + Echvi_4473 0.65 -0.3
5,350,470 + Echvi_4473 0.71 -0.5
5,350,470 + Echvi_4473 0.71 +0.9
5,350,470 + Echvi_4473 0.71 +0.3
5,350,471 - Echvi_4473 0.71 -0.6
5,350,471 - Echvi_4473 0.71 +1.7
5,350,486 - Echvi_4473 0.75 -1.4
5,350,492 - Echvi_4473 0.76 -1.3
5,350,511 - Echvi_4473 0.81 -0.8
5,350,515 + Echvi_4473 0.82 +1.3
5,350,515 + Echvi_4473 0.82 +0.8
5,350,592 + +0.7
5,350,611 - -0.8
5,350,611 - -2.1
5,350,611 - -2.0
5,350,613 + +0.1
5,350,646 + Echvi_4474 0.10 -2.4
5,350,777 + Echvi_4474 0.34 +1.0
5,350,816 + Echvi_4474 0.41 +0.7
5,350,817 - Echvi_4474 0.41 -2.4
5,350,820 + Echvi_4474 0.42 -1.9
5,350,837 + Echvi_4474 0.45 +0.3
5,350,930 + Echvi_4474 0.62 +0.4
5,350,948 + Echvi_4474 0.65 -0.1
5,350,948 + Echvi_4474 0.65 +1.1
5,350,948 + Echvi_4474 0.65 +1.2
5,350,949 - Echvi_4474 0.65 -2.5
5,350,949 - Echvi_4474 0.65 -1.1
5,350,977 + Echvi_4474 0.70 -0.5
5,350,977 + Echvi_4474 0.70 +0.1
5,351,050 + Echvi_4474 0.84 -0.2
5,351,119 + +0.9
5,351,119 + -0.7
5,351,123 - -2.5
5,351,123 - -2.2
5,351,188 + Echvi_4475 0.12 -1.6
5,351,190 + Echvi_4475 0.12 -1.6
5,351,190 + Echvi_4475 0.12 +0.1
5,351,217 + Echvi_4475 0.19 -1.1
5,351,223 + Echvi_4475 0.21 +0.2
5,351,223 + Echvi_4475 0.21 -0.4
5,351,256 - Echvi_4475 0.29 -1.7
5,351,256 - Echvi_4475 0.29 -1.9
5,351,256 - Echvi_4475 0.29 -0.9
5,351,277 + Echvi_4475 0.34 +1.5
5,351,277 + Echvi_4475 0.34 -1.7
5,351,315 + Echvi_4475 0.44 +1.7
5,351,329 + Echvi_4475 0.48 +0.4
5,351,342 + Echvi_4475 0.51 -0.6
5,351,343 - Echvi_4475 0.51 -3.0
5,351,377 + Echvi_4475 0.60 -0.7
5,351,377 + Echvi_4475 0.60 +0.3
5,351,377 + Echvi_4475 0.60 -0.1
5,351,378 - Echvi_4475 0.60 -2.2
5,351,378 - Echvi_4475 0.60 -2.5
5,351,378 - Echvi_4475 0.60 -2.2
5,351,379 + Echvi_4475 0.61 +0.3
5,351,379 + Echvi_4475 0.61 +0.3
5,351,379 + Echvi_4475 0.61 +1.0
5,351,379 + Echvi_4475 0.61 +0.1
5,351,379 + Echvi_4475 0.61 -0.3
5,351,379 + Echvi_4475 0.61 -0.2
5,351,380 - Echvi_4475 0.61 -3.5
5,351,380 - Echvi_4475 0.61 -2.2
5,351,380 - Echvi_4475 0.61 -1.9
5,351,382 - Echvi_4475 0.61 -0.9
5,351,497 - -1.4
5,351,596 - -2.2
5,351,596 - -1.7
5,351,651 + -0.4
5,351,651 + +1.4
5,351,651 + -1.3
5,351,651 + -1.2
5,351,651 + +0.0
5,351,651 + -0.9
5,351,652 - -2.2
5,351,652 - -3.2
5,351,659 - +0.7
5,351,659 - -1.4
5,351,664 + -1.6
5,351,717 + +0.9
5,351,718 - -2.7
5,351,718 - -1.5
5,351,787 - -0.7
5,351,787 - -0.1
5,351,790 + +0.7
5,351,791 - -0.3
5,351,809 + +1.0
5,351,809 + +0.7
5,351,809 + -1.4
5,351,810 - -2.6
5,351,819 + +0.3
5,351,820 - -2.7
5,351,867 - -2.8
5,351,874 - -0.3
5,351,874 - -2.7
5,351,874 - -3.2
5,351,971 + +0.1
5,351,973 + +0.1
5,351,973 + +0.6
5,351,973 + -0.9
5,351,974 - -2.4
5,351,974 - +0.1
5,351,975 + +0.8
5,351,975 + -2.0
5,351,975 + +0.9
5,351,975 + -1.3
5,351,975 + +0.6
5,351,975 + -0.7
5,352,032 - -1.1
5,352,043 + -0.7
5,352,044 - +1.9
5,352,048 - -0.6
5,352,055 - -2.4
5,352,085 + Echvi_4476 0.11 -2.0
5,352,086 - Echvi_4476 0.12 -3.0
5,352,093 - Echvi_4476 0.14 -2.5
5,352,116 + Echvi_4476 0.20 -1.8
5,352,117 - Echvi_4476 0.21 -2.6
5,352,117 - Echvi_4476 0.21 -3.8
5,352,214 + Echvi_4476 0.49 -0.4
5,352,214 + Echvi_4476 0.49 -0.3
5,352,215 - Echvi_4476 0.49 -1.1
5,352,231 + Echvi_4476 0.54 +1.1
5,352,232 - Echvi_4476 0.54 -0.1
5,352,270 + Echvi_4476 0.65 -0.6
5,352,303 + Echvi_4476 0.75 -0.8
5,352,303 + Echvi_4476 0.75 +1.0
5,352,304 - Echvi_4476 0.75 -3.6
5,352,413 + +0.3

Or see this region's nucleotide sequence