Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3443

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.032 mg/ml
4,071,937	+				+0.3
4,071,958	+				+0.2
4,071,985	+				-1.2
4,071,988	+				+0.7
4,072,034	+				+0.3
4,072,035	-				+0.7
4,072,055	+				+0.8
4,072,055	+				-1.2
4,072,055	+				+0.3
4,072,061	+				+0.7
4,072,148	+		Echvi_3442	0.23	-0.2
4,072,149	-		Echvi_3442	0.24	-0.7
4,072,149	-		Echvi_3442	0.24	+0.9
4,072,257	+		Echvi_3442	0.42	-0.1
4,072,261	+		Echvi_3442	0.43	-0.1
4,072,310	+		Echvi_3442	0.52	-0.2
4,072,310	+		Echvi_3442	0.52	+0.4
4,072,348	+		Echvi_3442	0.58	+0.1
4,072,348	+		Echvi_3442	0.58	+1.6
4,072,464	+		Echvi_3442	0.79	+1.9
4,072,465	-		Echvi_3442	0.79	+0.8
4,072,466	+		Echvi_3442	0.79	+1.6
4,072,466	+		Echvi_3442	0.79	-0.7
4,072,466	+		Echvi_3442	0.79	+2.1
4,072,467	-		Echvi_3442	0.79	-1.0
4,072,528	-				-0.5
4,072,528	-				+0.4
4,072,528	-				-0.7
4,072,604	+				-0.4
4,072,606	+				-0.9
4,072,606	+				-1.5
4,072,611	+				+1.6
4,072,625	+				-0.0
4,072,626	-				-3.1
4,072,631	+				-0.8
4,072,636	+				-0.1
4,072,636	+				-0.5
4,072,636	+				-2.2
4,072,692	+				-2.9
4,072,692	+				-0.0
4,072,813	-				-0.9
4,072,829	-		Echvi_3443	0.10	-1.3
4,072,877	-		Echvi_3443	0.13	-2.0
4,072,877	-		Echvi_3443	0.13	-1.5
4,072,880	+		Echvi_3443	0.13	-2.5
4,072,880	+		Echvi_3443	0.13	-2.7
4,072,881	-		Echvi_3443	0.13	-2.5
4,072,881	-		Echvi_3443	0.13	-1.4
4,072,881	-		Echvi_3443	0.13	-1.3
4,072,881	-		Echvi_3443	0.13	-0.9
4,073,009	-		Echvi_3443	0.20	+1.6
4,073,026	+		Echvi_3443	0.21	-0.7
4,073,056	+		Echvi_3443	0.22	-2.0
4,073,056	+		Echvi_3443	0.22	-1.7
4,073,057	-		Echvi_3443	0.22	-0.9
4,073,057	-		Echvi_3443	0.22	-1.8
4,073,057	-		Echvi_3443	0.22	-1.8
4,073,154	+		Echvi_3443	0.27	-0.5
4,073,218	+		Echvi_3443	0.31	+0.2
4,073,218	+		Echvi_3443	0.31	-1.6
4,073,254	-		Echvi_3443	0.33	-0.8
4,073,265	-		Echvi_3443	0.33	-1.9
4,073,296	+		Echvi_3443	0.35	-0.8
4,073,296	+		Echvi_3443	0.35	-2.3
4,073,296	+		Echvi_3443	0.35	-3.4
4,073,297	-		Echvi_3443	0.35	-1.2
4,073,297	-		Echvi_3443	0.35	-1.8
4,073,297	-		Echvi_3443	0.35	-1.0
4,073,303	-		Echvi_3443	0.35	+1.0
4,073,303	-		Echvi_3443	0.35	-1.6
4,073,303	-		Echvi_3443	0.35	-1.3
4,073,306	+		Echvi_3443	0.35	-1.4
4,073,307	-		Echvi_3443	0.36	-1.1
4,073,401	-		Echvi_3443	0.41	-1.7
4,073,401	-		Echvi_3443	0.41	-0.6
4,073,401	-		Echvi_3443	0.41	-1.6
4,073,525	-		Echvi_3443	0.47	+0.6
4,073,537	+		Echvi_3443	0.48	-2.2
4,073,538	-		Echvi_3443	0.48	-1.4
4,073,540	+		Echvi_3443	0.48	-0.7
4,073,540	+		Echvi_3443	0.48	-1.7
4,073,541	-		Echvi_3443	0.48	-0.5
4,073,839	+		Echvi_3443	0.64	-2.5
4,073,928	+		Echvi_3443	0.69	-1.1
4,073,929	-		Echvi_3443	0.69	-1.4
4,074,028	+		Echvi_3443	0.74	-1.0
4,074,146	-		Echvi_3443	0.80	-1.8
4,074,323	-		Echvi_3443	0.90	-2.8
4,074,389	-				-2.1
4,074,425	-				-1.0
4,074,525	-				-0.3
4,074,612	+				-0.2
4,074,631	+				+0.3
4,074,678	+				+0.7
4,074,679	-				+0.2
4,074,679	-				-3.8
4,074,688	-				-0.5
4,074,689	+				-0.1
4,074,690	-				+0.8
4,074,694	+				-2.1
4,074,722	+				-0.5
4,074,723	-				+0.8
4,074,723	-				-0.7
4,074,729	+				-1.9
4,074,730	-				-0.3
4,074,750	+				-0.3
4,074,751	-				+0.8
4,074,783	+				-3.1
4,074,797	-				+1.3
4,074,797	-				-1.7
4,074,807	+				-1.0
4,074,850	-				-0.9
4,074,858	+				+0.6
4,074,858	+				-0.0
4,074,858	+				-0.4
4,074,858	+				+0.7
4,074,859	-				+0.3
4,074,859	-				-2.7
4,074,859	-				-0.0
4,074,859	-				-0.9
4,075,015	+				+0.2
4,075,016	-				-0.0
4,075,032	+				-1.9
4,075,033	-				+0.4
4,075,033	-				+1.6
4,075,042	+				-0.9
4,075,042	+				-0.0
4,075,045	-				-2.1
4,075,116	+				-0.5
4,075,116	+				+0.3
4,075,116	+				-0.0
4,075,116	+				-1.1
4,075,116	+				-0.6
4,075,116	+				-2.2
4,075,118	+				+2.1
4,075,118	+				+1.0
4,075,181	-				+1.7
4,075,205	-				-2.1
4,075,232	+				-1.9
4,075,291	-				+0.1
4,075,291	-				-0.7
4,075,419	+				+0.3
4,075,491	-				-1.5
4,075,496	-				-0.6