Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3405

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3404 and Echvi_3405 are separated by 123 nucleotidesEchvi_3405 and Echvi_3406 are separated by 129 nucleotides Echvi_3404: Echvi_3404 - Predicted acyltransferases, at 4,027,605 to 4,029,671 _3404 Echvi_3405: Echvi_3405 - hypothetical protein, at 4,029,795 to 4,029,911 _3405 Echvi_3406: Echvi_3406 - TonB-dependent siderophore receptor, at 4,030,041 to 4,032,401 _3406 Position (kb) 4029 4030Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4028.868 kb on + strand, within Echvi_3404at 4028.868 kb on + strand, within Echvi_3404at 4028.868 kb on + strand, within Echvi_3404at 4028.869 kb on - strand, within Echvi_3404at 4028.869 kb on - strand, within Echvi_3404at 4028.880 kb on - strand, within Echvi_3404at 4028.916 kb on + strand, within Echvi_3404at 4028.916 kb on + strand, within Echvi_3404at 4028.917 kb on - strand, within Echvi_3404at 4028.928 kb on + strand, within Echvi_3404at 4028.928 kb on + strand, within Echvi_3404at 4028.928 kb on + strand, within Echvi_3404at 4028.929 kb on - strand, within Echvi_3404at 4028.929 kb on - strand, within Echvi_3404at 4028.941 kb on - strand, within Echvi_3404at 4028.992 kb on + strand, within Echvi_3404at 4029.003 kb on + strand, within Echvi_3404at 4029.009 kb on + strand, within Echvi_3404at 4029.010 kb on - strand, within Echvi_3404at 4029.019 kb on - strand, within Echvi_3404at 4029.019 kb on - strand, within Echvi_3404at 4029.019 kb on - strand, within Echvi_3404at 4029.020 kb on + strand, within Echvi_3404at 4029.020 kb on + strand, within Echvi_3404at 4029.020 kb on + strand, within Echvi_3404at 4029.020 kb on + strand, within Echvi_3404at 4029.021 kb on - strand, within Echvi_3404at 4029.021 kb on - strand, within Echvi_3404at 4029.048 kb on - strand, within Echvi_3404at 4029.059 kb on + strand, within Echvi_3404at 4029.061 kb on + strand, within Echvi_3404at 4029.062 kb on - strand, within Echvi_3404at 4029.108 kb on + strand, within Echvi_3404at 4029.135 kb on + strand, within Echvi_3404at 4029.138 kb on + strand, within Echvi_3404at 4029.150 kb on + strand, within Echvi_3404at 4029.156 kb on + strand, within Echvi_3404at 4029.162 kb on + strand, within Echvi_3404at 4029.163 kb on - strand, within Echvi_3404at 4029.163 kb on - strand, within Echvi_3404at 4029.163 kb on - strand, within Echvi_3404at 4029.163 kb on - strand, within Echvi_3404at 4029.225 kb on + strand, within Echvi_3404at 4029.226 kb on - strand, within Echvi_3404at 4029.226 kb on - strand, within Echvi_3404at 4029.229 kb on + strandat 4029.229 kb on + strand, within Echvi_3404at 4029.230 kb on - strand, within Echvi_3404at 4029.250 kb on - strand, within Echvi_3404at 4029.299 kb on - strand, within Echvi_3404at 4029.311 kb on + strand, within Echvi_3404at 4029.342 kb on + strand, within Echvi_3404at 4029.363 kb on + strand, within Echvi_3404at 4029.364 kb on - strand, within Echvi_3404at 4029.364 kb on - strand, within Echvi_3404at 4029.369 kb on - strand, within Echvi_3404at 4029.369 kb on - strand, within Echvi_3404at 4029.370 kb on + strand, within Echvi_3404at 4029.370 kb on + strand, within Echvi_3404at 4029.371 kb on - strand, within Echvi_3404at 4029.388 kb on + strand, within Echvi_3404at 4029.411 kb on - strand, within Echvi_3404at 4029.450 kb on - strand, within Echvi_3404at 4029.450 kb on - strand, within Echvi_3404at 4029.525 kb on - strandat 4029.525 kb on - strandat 4029.525 kb on - strandat 4029.533 kb on - strandat 4029.565 kb on + strandat 4029.619 kb on - strandat 4029.674 kb on - strandat 4029.674 kb on - strandat 4029.677 kb on - strandat 4029.905 kb on - strandat 4030.057 kb on + strandat 4030.060 kb on + strandat 4030.060 kb on + strandat 4030.060 kb on + strandat 4030.060 kb on + strandat 4030.146 kb on - strandat 4030.146 kb on - strandat 4030.146 kb on - strandat 4030.166 kb on + strandat 4030.186 kb on - strandat 4030.243 kb on - strandat 4030.243 kb on - strandat 4030.245 kb on - strandat 4030.253 kb on + strandat 4030.289 kb on + strand, within Echvi_3406at 4030.290 kb on - strand, within Echvi_3406at 4030.290 kb on - strand, within Echvi_3406at 4030.290 kb on - strand, within Echvi_3406at 4030.292 kb on - strand, within Echvi_3406at 4030.320 kb on - strand, within Echvi_3406at 4030.336 kb on + strand, within Echvi_3406at 4030.393 kb on - strand, within Echvi_3406at 4030.394 kb on + strand, within Echvi_3406at 4030.394 kb on + strand, within Echvi_3406at 4030.439 kb on - strand, within Echvi_3406at 4030.442 kb on - strand, within Echvi_3406at 4030.442 kb on - strand, within Echvi_3406at 4030.506 kb on - strand, within Echvi_3406at 4030.567 kb on + strand, within Echvi_3406at 4030.568 kb on - strand, within Echvi_3406at 4030.568 kb on - strand, within Echvi_3406at 4030.658 kb on + strand, within Echvi_3406at 4030.659 kb on - strand, within Echvi_3406at 4030.659 kb on - strand, within Echvi_3406at 4030.659 kb on - strand, within Echvi_3406at 4030.707 kb on - strand, within Echvi_3406at 4030.734 kb on - strand, within Echvi_3406at 4030.737 kb on + strand, within Echvi_3406at 4030.737 kb on + strand, within Echvi_3406at 4030.737 kb on + strand, within Echvi_3406at 4030.738 kb on - strand, within Echvi_3406at 4030.740 kb on - strand, within Echvi_3406at 4030.783 kb on + strand, within Echvi_3406at 4030.844 kb on - strand, within Echvi_3406at 4030.864 kb on + strand, within Echvi_3406at 4030.865 kb on - strand, within Echvi_3406at 4030.911 kb on + strand, within Echvi_3406

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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4,028,868 + Echvi_3404 0.61 +1.6
4,028,868 + Echvi_3404 0.61 +0.9
4,028,868 + Echvi_3404 0.61 +0.9
4,028,869 - Echvi_3404 0.61 -1.1
4,028,869 - Echvi_3404 0.61 +1.1
4,028,880 - Echvi_3404 0.62 +0.8
4,028,916 + Echvi_3404 0.63 -2.0
4,028,916 + Echvi_3404 0.63 +1.2
4,028,917 - Echvi_3404 0.63 -0.0
4,028,928 + Echvi_3404 0.64 +0.9
4,028,928 + Echvi_3404 0.64 -0.3
4,028,928 + Echvi_3404 0.64 +0.7
4,028,929 - Echvi_3404 0.64 +2.9
4,028,929 - Echvi_3404 0.64 +0.6
4,028,941 - Echvi_3404 0.65 +0.5
4,028,992 + Echvi_3404 0.67 +1.7
4,029,003 + Echvi_3404 0.68 +0.1
4,029,009 + Echvi_3404 0.68 -2.9
4,029,010 - Echvi_3404 0.68 -1.3
4,029,019 - Echvi_3404 0.68 -0.9
4,029,019 - Echvi_3404 0.68 -0.2
4,029,019 - Echvi_3404 0.68 +0.3
4,029,020 + Echvi_3404 0.68 +0.5
4,029,020 + Echvi_3404 0.68 -1.2
4,029,020 + Echvi_3404 0.68 -0.2
4,029,020 + Echvi_3404 0.68 +0.4
4,029,021 - Echvi_3404 0.69 +0.2
4,029,021 - Echvi_3404 0.69 +0.7
4,029,048 - Echvi_3404 0.70 -0.2
4,029,059 + Echvi_3404 0.70 +2.2
4,029,061 + Echvi_3404 0.70 +1.7
4,029,062 - Echvi_3404 0.70 +0.6
4,029,108 + Echvi_3404 0.73 -0.8
4,029,135 + Echvi_3404 0.74 +1.3
4,029,138 + Echvi_3404 0.74 +0.7
4,029,150 + Echvi_3404 0.75 -1.0
4,029,156 + Echvi_3404 0.75 -0.3
4,029,162 + Echvi_3404 0.75 +1.0
4,029,163 - Echvi_3404 0.75 +1.0
4,029,163 - Echvi_3404 0.75 -0.2
4,029,163 - Echvi_3404 0.75 -0.3
4,029,163 - Echvi_3404 0.75 -1.6
4,029,225 + Echvi_3404 0.78 +0.8
4,029,226 - Echvi_3404 0.78 +0.1
4,029,226 - Echvi_3404 0.78 +0.3
4,029,229 + +0.6
4,029,229 + Echvi_3404 0.79 +0.4
4,029,230 - Echvi_3404 0.79 -0.6
4,029,250 - Echvi_3404 0.80 -0.2
4,029,299 - Echvi_3404 0.82 +0.6
4,029,311 + Echvi_3404 0.83 +0.3
4,029,342 + Echvi_3404 0.84 +1.0
4,029,363 + Echvi_3404 0.85 +1.9
4,029,364 - Echvi_3404 0.85 -0.1
4,029,364 - Echvi_3404 0.85 +0.4
4,029,369 - Echvi_3404 0.85 -0.5
4,029,369 - Echvi_3404 0.85 -0.2
4,029,370 + Echvi_3404 0.85 +0.2
4,029,370 + Echvi_3404 0.85 +1.8
4,029,371 - Echvi_3404 0.85 +0.5
4,029,388 + Echvi_3404 0.86 +1.4
4,029,411 - Echvi_3404 0.87 -1.5
4,029,450 - Echvi_3404 0.89 -0.2
4,029,450 - Echvi_3404 0.89 -1.0
4,029,525 - +1.4
4,029,525 - +0.4
4,029,525 - -1.1
4,029,533 - +0.9
4,029,565 + +1.3
4,029,619 - +0.3
4,029,674 - -0.1
4,029,674 - -1.3
4,029,677 - +0.0
4,029,905 - -2.8
4,030,057 + +1.0
4,030,060 + +2.2
4,030,060 + +1.0
4,030,060 + +0.4
4,030,060 + +1.2
4,030,146 - -0.0
4,030,146 - -0.8
4,030,146 - -0.7
4,030,166 + +1.0
4,030,186 - +1.1
4,030,243 - -0.6
4,030,243 - -2.5
4,030,245 - -1.6
4,030,253 + +1.2
4,030,289 + Echvi_3406 0.11 +0.5
4,030,290 - Echvi_3406 0.11 +2.7
4,030,290 - Echvi_3406 0.11 +0.5
4,030,290 - Echvi_3406 0.11 -2.2
4,030,292 - Echvi_3406 0.11 +0.1
4,030,320 - Echvi_3406 0.12 -0.6
4,030,336 + Echvi_3406 0.12 +1.8
4,030,393 - Echvi_3406 0.15 +0.5
4,030,394 + Echvi_3406 0.15 +0.7
4,030,394 + Echvi_3406 0.15 +0.6
4,030,439 - Echvi_3406 0.17 -0.4
4,030,442 - Echvi_3406 0.17 +0.6
4,030,442 - Echvi_3406 0.17 +0.2
4,030,506 - Echvi_3406 0.20 +0.3
4,030,567 + Echvi_3406 0.22 +0.9
4,030,568 - Echvi_3406 0.22 +1.3
4,030,568 - Echvi_3406 0.22 +0.6
4,030,658 + Echvi_3406 0.26 +0.8
4,030,659 - Echvi_3406 0.26 +0.5
4,030,659 - Echvi_3406 0.26 +0.5
4,030,659 - Echvi_3406 0.26 -0.7
4,030,707 - Echvi_3406 0.28 -0.0
4,030,734 - Echvi_3406 0.29 -1.7
4,030,737 + Echvi_3406 0.29 +1.3
4,030,737 + Echvi_3406 0.29 +0.1
4,030,737 + Echvi_3406 0.29 +0.9
4,030,738 - Echvi_3406 0.30 -0.0
4,030,740 - Echvi_3406 0.30 -1.0
4,030,783 + Echvi_3406 0.31 +2.4
4,030,844 - Echvi_3406 0.34 +2.0
4,030,864 + Echvi_3406 0.35 -1.2
4,030,865 - Echvi_3406 0.35 +2.9
4,030,911 + Echvi_3406 0.37 -1.5

Or see this region's nucleotide sequence