Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3278
Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Doxycycline hyclate 0.032 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,880,755 | - | +2.2 | |||
3,880,755 | - | +0.8 | |||
3,881,062 | - | Echvi_3277 | 0.40 | +0.3 | |
3,881,062 | - | Echvi_3277 | 0.40 | -0.4 | |
3,881,157 | - | Echvi_3277 | 0.51 | -2.1 | |
3,881,157 | - | Echvi_3277 | 0.51 | +2.4 | |
3,881,253 | - | Echvi_3277 | 0.63 | -0.5 | |
3,881,382 | - | Echvi_3277 | 0.78 | +1.5 | |
3,881,450 | - | Echvi_3277 | 0.86 | +0.1 | |
3,881,646 | - | +0.9 | |||
3,881,646 | - | +0.6 | |||
3,881,652 | - | -0.2 | |||
3,881,655 | - | +0.1 | |||
3,881,673 | + | -0.7 | |||
3,881,702 | - | +0.2 | |||
3,881,755 | + | Echvi_3278 | 0.33 | -1.2 | |
3,881,765 | + | Echvi_3278 | 0.40 | -2.3 | |
3,881,765 | + | Echvi_3278 | 0.40 | -0.1 | |
3,881,824 | + | Echvi_3278 | 0.82 | -1.6 | |
3,881,828 | + | Echvi_3278 | 0.84 | -1.3 | |
3,881,838 | + | -1.4 | |||
3,881,839 | - | +2.1 | |||
3,882,266 | + | Echvi_3279 | 0.27 | +3.4 | |
3,882,305 | - | Echvi_3279 | 0.30 | +1.0 |
Or see this region's nucleotide sequence