Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2979

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.032 mg/ml
3,559,080	+				+0.0
3,559,080	+				-0.7
3,559,106	-				-0.2
3,559,106	-				-1.1
3,559,106	-				-0.4
3,559,195	+		Echvi_2978	0.19	-2.2
3,559,195	+		Echvi_2978	0.19	+0.2
3,559,196	-		Echvi_2978	0.19	-1.3
3,559,248	+		Echvi_2978	0.24	-0.9
3,559,265	+		Echvi_2978	0.26	-0.7
3,559,267	+		Echvi_2978	0.26	-0.5
3,559,268	-		Echvi_2978	0.27	-1.5
3,559,286	+		Echvi_2978	0.28	-0.8
3,559,337	-		Echvi_2978	0.34	-0.9
3,559,358	-		Echvi_2978	0.36	-2.5
3,559,369	-		Echvi_2978	0.37	-0.7
3,559,386	-		Echvi_2978	0.39	+0.6
3,559,386	-		Echvi_2978	0.39	-3.4
3,559,427	-		Echvi_2978	0.43	+0.0
3,559,450	+		Echvi_2978	0.46	-0.4
3,559,450	+		Echvi_2978	0.46	-0.7
3,559,451	-		Echvi_2978	0.46	-1.4
3,559,451	-		Echvi_2978	0.46	-3.3
3,559,451	-		Echvi_2978	0.46	-1.6
3,559,451	-		Echvi_2978	0.46	+0.1
3,559,463	+		Echvi_2978	0.47	+0.6
3,559,473	+		Echvi_2978	0.48	-3.3
3,559,486	+		Echvi_2978	0.50	-0.4
3,559,493	-		Echvi_2978	0.50	+0.4
3,559,553	-		Echvi_2978	0.57	-0.7
3,559,559	-		Echvi_2978	0.58	-1.4
3,559,597	+		Echvi_2978	0.62	-1.0
3,559,597	+		Echvi_2978	0.62	-0.5
3,559,598	-		Echvi_2978	0.62	-1.1
3,559,599	+		Echvi_2978	0.62	+0.2
3,559,599	+		Echvi_2978	0.62	-0.9
3,559,599	+		Echvi_2978	0.62	-1.6
3,559,600	-		Echvi_2978	0.62	-1.6
3,559,600	-		Echvi_2978	0.62	-0.2
3,559,686	-		Echvi_2978	0.71	-2.4
3,559,709	-		Echvi_2978	0.73	-2.2
3,559,806	+		Echvi_2978	0.84	-1.7
3,559,860	+		Echvi_2978	0.90	-1.9
3,559,861	-		Echvi_2978	0.90	+0.3
3,559,887	-				-0.2
3,559,970	+				-1.7
3,559,970	+				+0.6
3,559,971	-				-0.6
3,559,971	-				+2.1
3,559,972	+				-1.4
3,560,000	+				-0.5
3,560,001	-				-0.4
3,560,016	-				+1.2
3,560,037	+				+0.7
3,560,037	+				-1.4
3,560,038	-				+0.1
3,560,121	-				+0.4
3,560,121	-				+1.2
3,560,238	+		Echvi_2979	0.19	-0.9
3,560,239	-		Echvi_2979	0.19	-1.3
3,560,241	+		Echvi_2979	0.19	-0.1
3,560,243	+		Echvi_2979	0.19	-0.7
3,560,328	+		Echvi_2979	0.27	-0.1
3,560,329	-		Echvi_2979	0.27	-0.1
3,560,380	+		Echvi_2979	0.31	+0.6
3,560,380	+		Echvi_2979	0.31	+1.6
3,560,380	+		Echvi_2979	0.31	+2.1
3,560,380	+		Echvi_2979	0.31	+0.5
3,560,445	-		Echvi_2979	0.37	+0.2
3,560,447	+		Echvi_2979	0.37	+1.3
3,560,447	+		Echvi_2979	0.37	+0.6
3,560,448	-		Echvi_2979	0.37	-0.9
3,560,448	-		Echvi_2979	0.37	+0.2
3,560,448	-		Echvi_2979	0.37	+0.2
3,560,448	-		Echvi_2979	0.37	-0.7
3,560,452	-		Echvi_2979	0.38	-0.9
3,560,452	-		Echvi_2979	0.38	+0.9
3,560,454	-		Echvi_2979	0.38	-0.3
3,560,454	-		Echvi_2979	0.38	+1.0
3,560,502	+		Echvi_2979	0.42	+0.3
3,560,507	-		Echvi_2979	0.42	-0.4
3,560,606	+		Echvi_2979	0.51	-1.0
3,560,606	+		Echvi_2979	0.51	-0.4
3,560,607	-		Echvi_2979	0.51	-1.2
3,560,607	-		Echvi_2979	0.51	-1.7
3,560,607	-		Echvi_2979	0.51	+1.1
3,560,607	-		Echvi_2979	0.51	-1.0
3,560,611	+		Echvi_2979	0.52	+1.0
3,560,611	+		Echvi_2979	0.52	-0.7
3,560,611	+		Echvi_2979	0.52	+0.5
3,560,611	+		Echvi_2979	0.52	-1.4
3,560,611	+		Echvi_2979	0.52	-0.4
3,560,611	+		Echvi_2979	0.52	-0.4
3,560,612	-		Echvi_2979	0.52	-0.8
3,560,612	-		Echvi_2979	0.52	+3.0
3,560,613	+		Echvi_2979	0.52	-0.6
3,560,613	+		Echvi_2979	0.52	+0.0
3,560,662	-		Echvi_2979	0.56	+1.1
3,560,744	+		Echvi_2979	0.63	-1.2
3,560,745	-		Echvi_2979	0.63	-0.2
3,560,745	-		Echvi_2979	0.63	-1.0
3,560,747	+		Echvi_2979	0.63	+0.5
3,560,768	+		Echvi_2979	0.65	+0.3
3,560,786	+		Echvi_2979	0.67	-0.2
3,560,787	-		Echvi_2979	0.67	-0.5
3,560,787	-		Echvi_2979	0.67	-1.7
3,560,794	-		Echvi_2979	0.68	-0.8
3,560,795	+		Echvi_2979	0.68	-1.0
3,560,851	-		Echvi_2979	0.73	+0.6
3,560,851	-		Echvi_2979	0.73	+1.6
3,560,853	+		Echvi_2979	0.73	+1.9
3,560,853	+		Echvi_2979	0.73	+0.6
3,560,854	-		Echvi_2979	0.73	-0.3
3,560,945	+		Echvi_2979	0.81	+0.6
3,560,946	-		Echvi_2979	0.81	+0.1
3,560,970	+		Echvi_2979	0.83	-2.1
3,560,970	+		Echvi_2979	0.83	-0.5
3,560,971	-		Echvi_2979	0.83	+0.0
3,560,974	+		Echvi_2979	0.83	-1.0
3,561,018	+		Echvi_2979	0.87	-1.1
3,561,018	+		Echvi_2979	0.87	+0.5
3,561,095	+				+2.4
3,561,095	+				-0.5
3,561,096	-				-0.1
3,561,096	-				-1.0
3,561,096	-				-0.3
3,561,100	-				-0.5
3,561,323	+		Echvi_2980	0.15	-1.3
3,561,324	-		Echvi_2980	0.15	+1.5
3,561,324	-		Echvi_2980	0.15	-0.4
3,561,324	-		Echvi_2980	0.15	-0.6
3,561,329	-		Echvi_2980	0.16	-0.3
3,561,361	+		Echvi_2980	0.19	+0.7
3,561,362	-		Echvi_2980	0.19	-0.8
3,561,362	-		Echvi_2980	0.19	-1.0
3,561,458	+		Echvi_2980	0.29	-0.7
3,561,491	+		Echvi_2980	0.33	-1.5
3,561,497	-		Echvi_2980	0.33	-0.6
3,561,502	+		Echvi_2980	0.34	-0.4
3,561,502	+		Echvi_2980	0.34	-1.3
3,561,502	+		Echvi_2980	0.34	+0.4
3,561,502	+		Echvi_2980	0.34	-2.2
3,561,502	+		Echvi_2980	0.34	-1.0
3,561,503	-		Echvi_2980	0.34	-0.2
3,561,505	-		Echvi_2980	0.34	+0.7
3,561,517	-		Echvi_2980	0.35	-0.1
3,561,529	+		Echvi_2980	0.37	-1.5
3,561,588	-		Echvi_2980	0.43	+0.2
3,561,588	-		Echvi_2980	0.43	+0.6
3,561,665	-		Echvi_2980	0.51	+0.9
3,561,688	+		Echvi_2980	0.53	+0.6
3,561,689	-		Echvi_2980	0.53	-0.1
3,561,709	+		Echvi_2980	0.55	-0.2
3,561,709	+		Echvi_2980	0.55	+1.5
3,561,709	+		Echvi_2980	0.55	-0.6
3,561,709	+		Echvi_2980	0.55	-0.7
3,561,710	-		Echvi_2980	0.55	+0.2
3,561,710	-		Echvi_2980	0.55	-0.1
3,561,710	-		Echvi_2980	0.55	+0.2
3,561,710	-		Echvi_2980	0.55	+0.3
3,561,732	-		Echvi_2980	0.58	-0.6
3,561,736	-		Echvi_2980	0.58	+3.7
3,561,774	+		Echvi_2980	0.62	+2.2
3,561,774	+		Echvi_2980	0.62	+0.3
3,561,774	+		Echvi_2980	0.62	+1.3
3,561,785	+		Echvi_2980	0.63	+0.2
3,561,786	-		Echvi_2980	0.63	+1.8
3,561,786	-		Echvi_2980	0.63	-0.0
3,561,786	-		Echvi_2980	0.63	+0.0
3,561,786	-		Echvi_2980	0.63	+0.5
3,561,786	-		Echvi_2980	0.63	-0.8
3,561,787	+		Echvi_2980	0.63	-1.7
3,561,787	+		Echvi_2980	0.63	+1.0
3,561,788	-		Echvi_2980	0.64	+0.2
3,561,788	-		Echvi_2980	0.64	-0.0
3,561,806	-		Echvi_2980	0.65	+0.2
3,561,845	-		Echvi_2980	0.69	+0.3
3,561,896	+		Echvi_2980	0.75	-1.0
3,561,896	+		Echvi_2980	0.75	-0.5
3,561,896	+		Echvi_2980	0.75	-0.1
3,561,896	+		Echvi_2980	0.75	+0.8
3,561,897	-		Echvi_2980	0.75	-2.8
3,561,897	-		Echvi_2980	0.75	-0.4
3,561,897	-		Echvi_2980	0.75	-0.3
3,561,923	-		Echvi_2980	0.78	-0.3
3,561,927	-		Echvi_2980	0.78	-0.0
3,561,954	+		Echvi_2980	0.81	-0.4
3,562,028	+		Echvi_2980	0.88	+0.3
3,562,030	+		Echvi_2980	0.89	+0.0
3,562,031	-		Echvi_2980	0.89	+1.0
3,562,106	+				-0.7
3,562,107	-				+0.2
3,562,107	-				-0.7
3,562,107	-				+0.7
3,562,107	-				-0.4
3,562,162	-				+0.3