Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2729

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.032 mg/ml
3,249,671	+				-0.6
3,249,672	-				+0.3
3,249,738	+				-1.3
3,249,748	+				-0.0
3,249,749	-				+0.5
3,249,762	+				-0.1
3,249,769	+				+1.8
3,249,769	+				-0.3
3,249,769	+				+0.8
3,249,769	+				+0.1
3,249,769	+				-0.4
3,249,769	+				+0.7
3,249,769	+				-1.5
3,249,769	+				+0.4
3,249,769	+				+0.7
3,249,770	-				-2.0
3,249,770	-				+0.4
3,249,770	-				+2.1
3,249,770	-				+0.1
3,249,770	-				+2.1
3,249,780	+				-1.3
3,249,781	-				+0.8
3,249,798	+				+0.0
3,249,806	-				+0.1
3,249,839	+		Echvi_2728	0.14	-0.8
3,249,854	-		Echvi_2728	0.16	+0.1
3,249,885	+		Echvi_2728	0.21	-3.1
3,249,921	-		Echvi_2728	0.26	-0.8
3,249,982	+		Echvi_2728	0.35	-0.7
3,249,983	-		Echvi_2728	0.35	-0.5
3,249,983	-		Echvi_2728	0.35	-1.3
3,250,005	-		Echvi_2728	0.38	-2.4
3,250,019	-		Echvi_2728	0.41	-0.2
3,250,024	+		Echvi_2728	0.41	+0.1
3,250,025	-		Echvi_2728	0.41	-0.5
3,250,095	+		Echvi_2728	0.52	-0.8
3,250,095	+		Echvi_2728	0.52	+1.1
3,250,096	-		Echvi_2728	0.52	-0.6
3,250,155	-		Echvi_2728	0.60	+1.7
3,250,230	-		Echvi_2728	0.72	+0.9
3,250,249	+		Echvi_2728	0.74	-0.3
3,250,250	-		Echvi_2728	0.74	+0.9
3,250,321	-		Echvi_2728	0.85	-0.3
3,250,359	-				+1.1
3,250,359	-				-0.1
3,250,360	+				-1.3
3,250,360	+				-1.4
3,250,360	+				+1.7
3,250,361	-				+0.2
3,250,394	+				-0.5
3,250,394	+				+2.1
3,250,395	-				+0.2
3,250,395	-				+0.9
3,250,395	-				+0.1
3,250,446	+				-0.5
3,250,447	-				+0.3
3,250,447	-				-2.4
3,250,447	-				-0.1
3,250,447	-				+0.8
3,250,447	-				+1.0
3,250,447	-				-0.4
3,250,449	-				-1.7
3,250,449	-				+0.3
3,250,449	-				-0.7
3,250,449	-				+1.1
3,250,458	-				-1.0
3,250,616	+				-1.6
3,250,617	-				+0.8
3,250,621	+				-0.5
3,250,621	+				+2.0
3,250,654	-				+0.3
3,250,659	-				+1.7
3,250,725	+				+1.7
3,250,776	+				-1.4
3,250,776	+				-0.2
3,250,776	+				-2.3
3,250,777	-				-0.1
3,250,805	+		Echvi_2729	0.12	+1.8
3,250,806	-		Echvi_2729	0.12	-0.3
3,250,806	-		Echvi_2729	0.12	-0.2
3,250,806	-		Echvi_2729	0.12	-1.3
3,250,960	+		Echvi_2729	0.25	-1.3
3,250,961	-		Echvi_2729	0.25	-2.2
3,250,978	-		Echvi_2729	0.27	+1.9
3,250,988	+		Echvi_2729	0.27	-0.9
3,250,988	+		Echvi_2729	0.27	-0.9
3,251,001	+		Echvi_2729	0.29	+0.2
3,251,001	+		Echvi_2729	0.29	-0.3
3,251,002	-		Echvi_2729	0.29	-0.6
3,251,052	-		Echvi_2729	0.33	-0.7
3,251,100	-		Echvi_2729	0.37	-1.7
3,251,167	+		Echvi_2729	0.43	+1.0
3,251,193	+		Echvi_2729	0.45	-0.8
3,251,214	+		Echvi_2729	0.47	-0.7
3,251,214	+		Echvi_2729	0.47	-0.3
3,251,227	+		Echvi_2729	0.48	+1.2
3,251,411	-		Echvi_2729	0.64	+1.1
3,251,496	-		Echvi_2729	0.71	-0.2
3,251,514	-		Echvi_2729	0.73	-0.2
3,251,517	+		Echvi_2729	0.73	-0.9
3,251,586	-		Echvi_2729	0.79	-0.2
3,251,634	+		Echvi_2729	0.83	-0.9
3,251,665	+		Echvi_2729	0.86	-0.9
3,251,665	+		Echvi_2729	0.86	-1.8
3,251,666	-		Echvi_2729	0.86	+2.2
3,251,666	-		Echvi_2729	0.86	-0.6
3,251,666	-		Echvi_2729	0.86	-1.4
3,251,672	+		Echvi_2729	0.86	+1.1
3,251,697	-		Echvi_2729	0.88	-1.2
3,251,697	-		Echvi_2729	0.88	+0.7
3,251,777	+				-1.3
3,251,778	-				-2.2
3,251,779	+				+3.2
3,251,779	+				+2.3
3,251,780	-				+1.1
3,251,780	-				+0.6
3,251,782	-				+1.2
3,251,782	-				+1.6
3,251,782	-				-0.1
3,251,925	+				-0.7
3,251,926	-				+0.2
3,251,926	-				+0.9
3,251,926	-				+0.7
3,251,931	-				-0.1
3,251,937	+				-0.5
3,252,014	-				-0.0
3,252,023	+				+0.3
3,252,059	-				-1.9
3,252,079	+				+1.7
3,252,140	-				-0.0
3,252,266	+				-0.1
3,252,268	+				+0.6
3,252,290	-				+0.9
3,252,301	+				-0.7
3,252,310	+				-0.0
3,252,310	+				+1.7
3,252,310	+				-0.1
3,252,311	-				+0.1
3,252,311	-				+0.1
3,252,311	-				+0.0
3,252,323	+				-0.9
3,252,407	+				+0.7
3,252,440	+		Echvi_2730	0.12	+1.1
3,252,467	+		Echvi_2730	0.15	-1.3
3,252,468	-		Echvi_2730	0.15	+0.1
3,252,473	-		Echvi_2730	0.16	-0.2
3,252,575	+		Echvi_2730	0.29	-1.5
3,252,577	+		Echvi_2730	0.29	-0.3
3,252,577	+		Echvi_2730	0.29	+1.7
3,252,577	+		Echvi_2730	0.29	-0.2
3,252,578	-		Echvi_2730	0.29	-2.3
3,252,578	-		Echvi_2730	0.29	-0.4
3,252,585	+		Echvi_2730	0.30	-0.8
3,252,599	+		Echvi_2730	0.32	+0.3
3,252,640	-		Echvi_2730	0.37	-1.2
3,252,722	-		Echvi_2730	0.48	-0.6
3,252,722	-		Echvi_2730	0.48	-2.7
3,252,774	+		Echvi_2730	0.54	+0.9
3,252,775	-		Echvi_2730	0.55	-1.9
3,252,775	-		Echvi_2730	0.55	+1.0