Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2573

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.032 mg/ml
3,053,051	+				-0.1
3,053,058	+				-1.4
3,053,062	-				+0.1
3,053,062	-				-0.7
3,053,100	+				-1.2
3,053,100	+				+1.1
3,053,135	-				+0.1
3,053,141	+				+4.0
3,053,173	-				-0.4
3,053,187	-				-0.3
3,053,298	-				-0.3
3,053,298	-				-0.7
3,053,409	+				+1.8
3,053,431	+				+1.9
3,053,431	+				+0.8
3,053,512	+				-0.7
3,053,565	+				-0.4
3,053,600	+				-0.3
3,053,600	+				+1.1
3,053,674	+				-0.2
3,053,684	+				-0.8
3,053,759	-				-0.3
3,053,810	-				+0.2
3,053,822	+				-0.8
3,053,822	+				+0.5
3,053,823	-				+0.3
3,053,885	+				+0.6
3,053,886	-				+0.1
3,053,914	+				+1.0
3,053,926	+				-0.5
3,053,927	-				+0.1
3,053,935	+				-1.0
3,053,936	-				-0.2
3,053,936	-				+0.9
3,053,971	+				-0.2
3,053,982	-				-0.1
3,054,085	+				-1.2
3,054,150	+		Echvi_2573	0.15	-1.1
3,054,151	-		Echvi_2573	0.16	+0.1
3,054,154	+		Echvi_2573	0.16	-3.4
3,054,155	-		Echvi_2573	0.16	-1.7
3,054,155	-		Echvi_2573	0.16	-0.2
3,054,160	-		Echvi_2573	0.17	-0.7
3,054,197	+		Echvi_2573	0.21	-2.7
3,054,198	-		Echvi_2573	0.21	-1.2
3,054,198	-		Echvi_2573	0.21	-3.1
3,054,198	-		Echvi_2573	0.21	-3.4
3,054,214	-		Echvi_2573	0.23	-2.8
3,054,231	+		Echvi_2573	0.25	-1.5
3,054,247	+		Echvi_2573	0.26	-2.1
3,054,247	+		Echvi_2573	0.26	-0.1
3,054,250	+		Echvi_2573	0.27	-1.4
3,054,250	+		Echvi_2573	0.27	-2.2
3,054,251	-		Echvi_2573	0.27	-2.9
3,054,251	-		Echvi_2573	0.27	-1.7
3,054,251	-		Echvi_2573	0.27	-0.7
3,054,251	-		Echvi_2573	0.27	-2.1
3,054,252	+		Echvi_2573	0.27	-1.9
3,054,253	-		Echvi_2573	0.27	-1.4
3,054,264	+		Echvi_2573	0.28	+0.6
3,054,265	-		Echvi_2573	0.28	+0.3
3,054,282	+		Echvi_2573	0.30	-2.6
3,054,283	-		Echvi_2573	0.31	-1.9
3,054,283	-		Echvi_2573	0.31	-1.5
3,054,284	+		Echvi_2573	0.31	-2.3
3,054,343	+		Echvi_2573	0.37	-1.3
3,054,373	-		Echvi_2573	0.41	-1.8
3,054,384	-		Echvi_2573	0.42	-0.3
3,054,415	+		Echvi_2573	0.45	-1.7
3,054,416	-		Echvi_2573	0.46	-0.5
3,054,466	+		Echvi_2573	0.51	+0.2
3,054,467	-		Echvi_2573	0.51	-0.6
3,054,528	+		Echvi_2573	0.58	-1.6
3,054,529	-		Echvi_2573	0.58	-1.1
3,054,586	+		Echvi_2573	0.65	-2.0
3,054,586	+		Echvi_2573	0.65	-3.3
3,054,587	-		Echvi_2573	0.65	-1.5
3,054,587	-		Echvi_2573	0.65	-1.2
3,054,587	-		Echvi_2573	0.65	+0.5
3,054,588	+		Echvi_2573	0.65	-3.3
3,054,589	-		Echvi_2573	0.65	-0.4
3,054,589	-		Echvi_2573	0.65	-1.5
3,054,607	-		Echvi_2573	0.67	-2.3
3,054,612	+		Echvi_2573	0.68	-2.7
3,054,685	-		Echvi_2573	0.76	-3.1
3,054,710	+		Echvi_2573	0.79	-1.0
3,054,710	+		Echvi_2573	0.79	-4.0
3,054,763	-		Echvi_2573	0.85	-0.4
3,054,796	+		Echvi_2573	0.88	-0.4
3,054,796	+		Echvi_2573	0.88	-1.0
3,054,797	-		Echvi_2573	0.89	-0.2
3,054,797	-		Echvi_2573	0.89	-0.5
3,054,797	-		Echvi_2573	0.89	-2.5
3,054,798	+		Echvi_2573	0.89	-2.6
3,054,798	+		Echvi_2573	0.89	-1.8
3,054,798	+		Echvi_2573	0.89	-1.1
3,054,799	-		Echvi_2573	0.89	-2.0
3,054,799	-		Echvi_2573	0.89	-1.6
3,054,801	+		Echvi_2573	0.89	-0.5
3,054,801	+		Echvi_2573	0.89	-2.1
3,054,802	-		Echvi_2573	0.89	-2.6
3,054,856	+				-0.5
3,054,885	+				+0.8
3,054,885	+				+1.8
3,054,886	-				-0.7
3,054,908	+				-0.5
3,054,918	+				+1.6
3,054,919	-				+1.6
3,054,919	-				+0.2
3,054,919	-				-0.8
3,054,919	-				-0.4
3,054,929	-				+1.2
3,054,929	-				-0.7
3,054,944	-				+0.2
3,054,950	-				-0.8
3,054,950	-				+0.2
3,054,986	-				+2.0
3,055,023	+				+3.1
3,055,024	-				+0.2
3,055,034	-				-0.5
3,055,049	+				+0.0
3,055,054	+				-1.1
3,055,118	-				-0.8
3,055,126	+				+0.6
3,055,134	+				+0.3
3,055,134	+				+1.2
3,055,134	+				+0.1
3,055,135	-				-0.4
3,055,135	-				+0.2
3,055,177	+		Echvi_2574	0.43	+1.4
3,055,178	-		Echvi_2574	0.44	+1.0
3,055,178	-		Echvi_2574	0.44	+0.9
3,055,180	+		Echvi_2574	0.46	-0.9
3,055,181	-		Echvi_2574	0.47	+1.7
3,055,182	+		Echvi_2574	0.48	-0.4
3,055,182	+		Echvi_2574	0.48	-2.2
3,055,183	-		Echvi_2574	0.49	-0.3
3,055,201	+		Echvi_2574	0.67	+1.1
3,055,204	-		Echvi_2574	0.70	-0.1
3,055,204	-		Echvi_2574	0.70	+0.1
3,055,218	-		Echvi_2574	0.83	+1.6
3,055,236	+				+0.4
3,055,236	+				-0.3
3,055,267	-				+0.3
3,055,267	-				-1.1
3,055,293	+				-1.2
3,055,293	+				+0.3
3,055,294	-				+0.3
3,055,297	-				+0.9
3,055,303	-				-1.4
3,055,367	+		Echvi_2575	0.20	+1.2
3,055,368	-		Echvi_2575	0.21	+0.3
3,055,376	+		Echvi_2575	0.22	-1.5
3,055,453	+		Echvi_2575	0.35	+0.7
3,055,453	+		Echvi_2575	0.35	-1.4
3,055,453	+		Echvi_2575	0.35	-0.5
3,055,454	-		Echvi_2575	0.36	+0.6
3,055,454	-		Echvi_2575	0.36	-1.6
3,055,454	-		Echvi_2575	0.36	+0.3
3,055,454	-		Echvi_2575	0.36	-1.2
3,055,454	-		Echvi_2575	0.36	-1.4
3,055,495	+		Echvi_2575	0.43	-1.6
3,055,520	+		Echvi_2575	0.47	-1.1
3,055,521	-		Echvi_2575	0.47	-0.4
3,055,527	+		Echvi_2575	0.48	+0.3
3,055,528	-		Echvi_2575	0.49	+0.3
3,055,549	+		Echvi_2575	0.52	-0.9
3,055,550	-		Echvi_2575	0.52	-1.5
3,055,557	-		Echvi_2575	0.54	-0.7
3,055,618	+		Echvi_2575	0.64	-0.0
3,055,623	+		Echvi_2575	0.65	-0.0
3,055,624	-		Echvi_2575	0.65	+0.5
3,055,640	+		Echvi_2575	0.68	-0.7
3,055,641	-		Echvi_2575	0.68	+0.4
3,055,641	-		Echvi_2575	0.68	+0.3
3,055,657	+		Echvi_2575	0.71	-2.7
3,055,685	+		Echvi_2575	0.76	-0.4
3,055,685	+		Echvi_2575	0.76	-2.4
3,055,686	-		Echvi_2575	0.76	+1.6
3,055,793	-				+0.3
3,055,809	+				+0.0
3,055,820	+				-0.2
3,055,821	-				-0.2
3,055,821	-				-0.4
3,055,831	+				-2.5
3,055,834	+				-0.4
3,055,883	+				+0.4
3,055,888	-				+0.6
3,055,888	-				+1.6
3,055,888	-				-0.2