Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2046

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.032 mg/ml
2,414,764	-		Echvi_2045	0.68	+1.1
2,414,771	-		Echvi_2045	0.68	+0.5
2,414,796	-		Echvi_2045	0.69	+0.1
2,414,811	-		Echvi_2045	0.70	+0.6
2,414,852	+		Echvi_2045	0.72	+0.3
2,414,853	-		Echvi_2045	0.72	+0.4
2,414,853	-		Echvi_2045	0.72	-0.2
2,414,853	-		Echvi_2045	0.72	-0.1
2,414,853	-		Echvi_2045	0.72	-0.4
2,414,857	+		Echvi_2045	0.73	-1.3
2,414,910	+		Echvi_2045	0.76	+2.2
2,414,910	+		Echvi_2045	0.76	-0.8
2,414,911	-		Echvi_2045	0.76	-3.0
2,414,967	+		Echvi_2045	0.79	-0.6
2,414,968	-		Echvi_2045	0.79	+0.8
2,415,033	+		Echvi_2045	0.83	+1.7
2,415,143	+		Echvi_2045	0.89	+0.9
2,415,159	+		Echvi_2045	0.90	+0.3
2,415,268	-				-0.4
2,415,268	-				-0.3
2,415,296	+				+0.2
2,415,297	-				+0.7
2,415,297	-				+1.3
2,415,297	-				-0.3
2,415,297	-				-0.3
2,415,326	+				-0.4
2,415,326	+				-1.0
2,415,327	-				+2.4
2,415,346	-				+0.7
2,415,419	+				+1.3
2,415,493	-				-1.3
2,415,516	+				+0.1
2,415,527	+				-0.3
2,415,579	-				+0.2
2,415,615	-				-2.1
2,415,632	-				-0.3
2,415,658	+				+2.4
2,415,659	-				-1.9
2,415,659	-				-2.3
2,415,659	-				-1.9
2,415,712	+		Echvi_2046	0.12	-0.8
2,415,712	+		Echvi_2046	0.12	+1.1
2,415,713	-		Echvi_2046	0.12	+1.1
2,415,713	-		Echvi_2046	0.12	+3.3
2,415,773	-		Echvi_2046	0.22	-0.5
2,415,812	+		Echvi_2046	0.28	-1.8
2,415,812	+		Echvi_2046	0.28	-1.6
2,415,826	-		Echvi_2046	0.30	-1.3
2,415,836	-		Echvi_2046	0.31	-1.1
2,415,872	+		Echvi_2046	0.37	-2.7
2,415,880	+		Echvi_2046	0.38	-3.2
2,415,884	+		Echvi_2046	0.39	-0.6
2,415,884	+		Echvi_2046	0.39	-0.1
2,415,990	+		Echvi_2046	0.55	-0.3
2,415,990	+		Echvi_2046	0.55	-0.7
2,416,029	+		Echvi_2046	0.61	-1.6
2,416,029	+		Echvi_2046	0.61	-3.7
2,416,192	-		Echvi_2046	0.87	-0.9
2,416,192	-		Echvi_2046	0.87	+0.8
2,416,235	+				-1.6
2,416,278	-				-0.3
2,416,279	+				-1.6
2,416,279	+				-1.2
2,416,279	+				-1.5
2,416,279	+				-2.3
2,416,297	+				-0.1
2,416,300	+				-1.8
2,416,301	-				-0.1
2,416,301	-				+0.5
2,416,310	-				+1.7
2,416,376	+				-2.6
2,416,378	+				-2.9
2,416,405	+				-2.6
2,416,483	+		Echvi_2047	0.18	-0.3
2,416,484	-		Echvi_2047	0.18	-0.3
2,416,484	-		Echvi_2047	0.18	-1.3
2,416,520	+		Echvi_2047	0.24	-2.4
2,416,521	-		Echvi_2047	0.25	-0.5
2,416,709	+		Echvi_2047	0.55	-1.2
2,416,743	-		Echvi_2047	0.61	-2.0
2,416,748	+		Echvi_2047	0.62	-0.6
2,416,750	+		Echvi_2047	0.62	-0.8
2,416,750	+		Echvi_2047	0.62	-1.4
2,416,751	-		Echvi_2047	0.62	-0.9
2,416,806	-		Echvi_2047	0.71	-3.7
2,416,869	-		Echvi_2047	0.81	-1.4
2,416,870	+		Echvi_2047	0.82	-2.2
2,416,871	-		Echvi_2047	0.82	-1.6
2,416,871	-		Echvi_2047	0.82	-2.3
2,416,891	+		Echvi_2047	0.85	-1.6
2,416,915	-		Echvi_2047	0.89	-0.6
2,416,926	+				-2.7
2,416,929	+				-3.1
2,416,929	+				-1.6
2,416,930	-				-0.0
2,416,930	-				-3.8
2,416,985	-				-1.3
2,416,985	-				-0.6
2,416,985	-				-1.7
2,417,033	+				-3.1
2,417,033	+				-0.9
2,417,037	+				-0.6
2,417,037	+				-1.3
2,417,042	+				-1.4
2,417,042	+				-2.7
2,417,042	+				-2.4
2,417,135	+		Echvi_2048	0.14	-1.1
2,417,138	+		Echvi_2048	0.15	-3.2
2,417,138	+		Echvi_2048	0.15	-2.2
2,417,138	+		Echvi_2048	0.15	-0.4
2,417,140	+		Echvi_2048	0.15	-0.8
2,417,140	+		Echvi_2048	0.15	-0.4
2,417,180	-		Echvi_2048	0.18	+4.0
2,417,195	+		Echvi_2048	0.20	-0.8
2,417,195	+		Echvi_2048	0.20	-0.4
2,417,251	+		Echvi_2048	0.25	-0.6
2,417,263	+		Echvi_2048	0.26	-2.3