Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1878 and Echvi_1879 are separated by 154 nucleotides Echvi_1879 and Echvi_1880 are separated by 30 nucleotides
Echvi_1878: Echvi_1878 - Beta-xylosidase, at 2,204,467 to 2,205,591
_1878
Echvi_1879: Echvi_1879 - L-arabinose isomerase (EC 5.3.1.4) (from data) , at 2,205,746 to 2,207,248
_1879
Echvi_1880: Echvi_1880 - L-arabinose symporter (from data) , at 2,207,279 to 2,209,153
_1880
Position (kb)
2205
2206
2207
2208 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2204.764 kb on + strand, within Echvi_1878 at 2204.764 kb on + strand, within Echvi_1878 at 2204.765 kb on - strand, within Echvi_1878 at 2204.765 kb on - strand, within Echvi_1878 at 2204.808 kb on + strand, within Echvi_1878 at 2204.811 kb on + strand, within Echvi_1878 at 2204.812 kb on - strand, within Echvi_1878 at 2204.812 kb on - strand, within Echvi_1878 at 2204.812 kb on - strand, within Echvi_1878 at 2204.830 kb on + strand, within Echvi_1878 at 2204.831 kb on - strand, within Echvi_1878 at 2205.016 kb on - strand, within Echvi_1878 at 2205.017 kb on + strand, within Echvi_1878 at 2205.176 kb on + strand, within Echvi_1878 at 2205.176 kb on + strand, within Echvi_1878 at 2205.177 kb on - strand, within Echvi_1878 at 2205.177 kb on - strand, within Echvi_1878 at 2205.177 kb on - strand, within Echvi_1878 at 2205.177 kb on - strand, within Echvi_1878 at 2205.242 kb on - strand, within Echvi_1878 at 2205.305 kb on + strand, within Echvi_1878 at 2205.306 kb on - strand, within Echvi_1878 at 2205.374 kb on + strand, within Echvi_1878 at 2205.375 kb on - strand, within Echvi_1878 at 2205.375 kb on - strand, within Echvi_1878 at 2205.375 kb on - strand, within Echvi_1878 at 2205.379 kb on - strand, within Echvi_1878 at 2205.453 kb on - strand, within Echvi_1878 at 2205.463 kb on - strand, within Echvi_1878 at 2205.566 kb on - strand at 2205.604 kb on - strand at 2205.620 kb on - strand at 2205.672 kb on - strand at 2205.682 kb on + strand at 2205.683 kb on - strand at 2205.737 kb on + strand at 2205.738 kb on - strand at 2205.765 kb on + strand at 2205.768 kb on + strand at 2205.769 kb on - strand at 2205.880 kb on + strand at 2205.972 kb on - strand, within Echvi_1879 at 2205.991 kb on + strand, within Echvi_1879 at 2206.013 kb on + strand, within Echvi_1879 at 2206.022 kb on + strand, within Echvi_1879 at 2206.023 kb on - strand, within Echvi_1879 at 2206.023 kb on - strand, within Echvi_1879 at 2206.104 kb on - strand, within Echvi_1879 at 2206.180 kb on + strand, within Echvi_1879 at 2206.180 kb on + strand, within Echvi_1879 at 2206.211 kb on + strand, within Echvi_1879 at 2206.245 kb on + strand, within Echvi_1879 at 2206.245 kb on + strand, within Echvi_1879 at 2206.245 kb on + strand, within Echvi_1879 at 2206.245 kb on + strand, within Echvi_1879 at 2206.245 kb on + strand, within Echvi_1879 at 2206.245 kb on + strand, within Echvi_1879 at 2206.245 kb on + strand, within Echvi_1879 at 2206.246 kb on - strand, within Echvi_1879 at 2206.246 kb on - strand, within Echvi_1879 at 2206.246 kb on - strand, within Echvi_1879 at 2206.341 kb on + strand, within Echvi_1879 at 2206.348 kb on - strand, within Echvi_1879 at 2206.386 kb on - strand, within Echvi_1879 at 2206.538 kb on - strand, within Echvi_1879 at 2206.539 kb on + strand, within Echvi_1879 at 2206.539 kb on + strand, within Echvi_1879 at 2206.539 kb on + strand, within Echvi_1879 at 2206.539 kb on + strand, within Echvi_1879 at 2206.539 kb on + strand, within Echvi_1879 at 2206.540 kb on - strand, within Echvi_1879 at 2206.540 kb on - strand, within Echvi_1879 at 2206.540 kb on - strand, within Echvi_1879 at 2206.552 kb on - strand, within Echvi_1879 at 2206.623 kb on + strand, within Echvi_1879 at 2206.624 kb on - strand, within Echvi_1879 at 2206.661 kb on + strand, within Echvi_1879 at 2206.661 kb on + strand, within Echvi_1879 at 2206.662 kb on - strand, within Echvi_1879 at 2206.662 kb on - strand, within Echvi_1879 at 2206.781 kb on + strand, within Echvi_1879 at 2206.781 kb on + strand, within Echvi_1879 at 2206.805 kb on + strand, within Echvi_1879 at 2206.824 kb on - strand, within Echvi_1879 at 2206.929 kb on + strand, within Echvi_1879 at 2206.929 kb on + strand, within Echvi_1879 at 2207.021 kb on + strand, within Echvi_1879 at 2207.036 kb on - strand, within Echvi_1879 at 2207.068 kb on - strand, within Echvi_1879 at 2207.098 kb on + strand at 2207.099 kb on - strand at 2207.260 kb on - strand at 2207.264 kb on - strand at 2207.264 kb on - strand at 2207.267 kb on - strand at 2207.267 kb on - strand at 2207.295 kb on + strand at 2207.299 kb on - strand at 2207.312 kb on + strand at 2207.312 kb on + strand at 2207.359 kb on + strand at 2207.359 kb on + strand at 2207.364 kb on - strand at 2207.366 kb on + strand at 2207.411 kb on + strand at 2207.467 kb on + strand, within Echvi_1880 at 2207.491 kb on - strand, within Echvi_1880 at 2207.629 kb on + strand, within Echvi_1880 at 2207.663 kb on + strand, within Echvi_1880 at 2207.663 kb on + strand, within Echvi_1880 at 2207.663 kb on + strand, within Echvi_1880 at 2207.663 kb on + strand, within Echvi_1880 at 2207.663 kb on + strand at 2207.663 kb on + strand, within Echvi_1880 at 2207.663 kb on + strand, within Echvi_1880 at 2207.663 kb on + strand, within Echvi_1880 at 2207.664 kb on - strand, within Echvi_1880 at 2207.664 kb on - strand, within Echvi_1880 at 2207.664 kb on - strand, within Echvi_1880 at 2207.664 kb on - strand, within Echvi_1880 at 2207.664 kb on - strand, within Echvi_1880 at 2207.668 kb on - strand, within Echvi_1880 at 2207.768 kb on - strand, within Echvi_1880 at 2207.782 kb on + strand, within Echvi_1880 at 2207.782 kb on + strand, within Echvi_1880 at 2207.782 kb on + strand, within Echvi_1880 at 2207.805 kb on - strand, within Echvi_1880 at 2207.805 kb on - strand, within Echvi_1880 at 2207.823 kb on + strand, within Echvi_1880 at 2207.823 kb on + strand, within Echvi_1880 at 2207.843 kb on - strand, within Echvi_1880 at 2207.852 kb on + strand, within Echvi_1880 at 2207.853 kb on - strand, within Echvi_1880 at 2208.004 kb on + strand, within Echvi_1880 at 2208.139 kb on + strand, within Echvi_1880 at 2208.204 kb on + strand, within Echvi_1880 at 2208.205 kb on - strand, within Echvi_1880 at 2208.205 kb on - strand, within Echvi_1880
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 2,204,764 + Echvi_1878 0.26 -0.3 2,204,764 + Echvi_1878 0.26 +0.9 2,204,765 - Echvi_1878 0.26 -0.5 2,204,765 - Echvi_1878 0.26 -1.6 2,204,808 + Echvi_1878 0.30 +1.3 2,204,811 + Echvi_1878 0.31 -2.5 2,204,812 - Echvi_1878 0.31 +0.5 2,204,812 - Echvi_1878 0.31 -0.5 2,204,812 - Echvi_1878 0.31 +1.2 2,204,830 + Echvi_1878 0.32 -0.5 2,204,831 - Echvi_1878 0.32 +0.5 2,205,016 - Echvi_1878 0.49 +0.2 2,205,017 + Echvi_1878 0.49 -2.4 2,205,176 + Echvi_1878 0.63 +0.2 2,205,176 + Echvi_1878 0.63 +0.7 2,205,177 - Echvi_1878 0.63 +0.3 2,205,177 - Echvi_1878 0.63 -1.2 2,205,177 - Echvi_1878 0.63 +0.9 2,205,177 - Echvi_1878 0.63 -1.5 2,205,242 - Echvi_1878 0.69 +1.0 2,205,305 + Echvi_1878 0.74 -0.2 2,205,306 - Echvi_1878 0.75 -0.8 2,205,374 + Echvi_1878 0.81 +1.0 2,205,375 - Echvi_1878 0.81 -0.0 2,205,375 - Echvi_1878 0.81 +0.2 2,205,375 - Echvi_1878 0.81 +0.3 2,205,379 - Echvi_1878 0.81 -0.9 2,205,453 - Echvi_1878 0.88 +0.4 2,205,463 - Echvi_1878 0.89 +1.2 2,205,566 - +0.3 2,205,604 - +0.7 2,205,620 - +1.5 2,205,672 - -0.1 2,205,682 + -1.6 2,205,683 - -0.1 2,205,737 + +1.1 2,205,738 - -0.5 2,205,765 + +1.4 2,205,768 + -1.1 2,205,769 - -0.2 2,205,880 + -2.2 2,205,972 - Echvi_1879 0.15 +1.3 2,205,991 + Echvi_1879 0.16 +0.4 2,206,013 + Echvi_1879 0.18 -0.2 2,206,022 + Echvi_1879 0.18 -0.1 2,206,023 - Echvi_1879 0.18 -0.2 2,206,023 - Echvi_1879 0.18 +0.5 2,206,104 - Echvi_1879 0.24 +0.5 2,206,180 + Echvi_1879 0.29 -0.2 2,206,180 + Echvi_1879 0.29 +0.1 2,206,211 + Echvi_1879 0.31 -0.5 2,206,245 + Echvi_1879 0.33 -1.2 2,206,245 + Echvi_1879 0.33 -1.3 2,206,245 + Echvi_1879 0.33 +0.2 2,206,245 + Echvi_1879 0.33 +0.6 2,206,245 + Echvi_1879 0.33 -0.8 2,206,245 + Echvi_1879 0.33 -1.3 2,206,245 + Echvi_1879 0.33 -1.0 2,206,246 - Echvi_1879 0.33 +2.3 2,206,246 - Echvi_1879 0.33 +0.1 2,206,246 - Echvi_1879 0.33 +0.8 2,206,341 + Echvi_1879 0.40 -0.1 2,206,348 - Echvi_1879 0.40 +0.1 2,206,386 - Echvi_1879 0.43 +1.1 2,206,538 - Echvi_1879 0.53 -0.6 2,206,539 + Echvi_1879 0.53 -1.1 2,206,539 + Echvi_1879 0.53 -2.5 2,206,539 + Echvi_1879 0.53 +0.6 2,206,539 + Echvi_1879 0.53 +0.9 2,206,539 + Echvi_1879 0.53 -0.1 2,206,540 - Echvi_1879 0.53 +1.5 2,206,540 - Echvi_1879 0.53 -0.2 2,206,540 - Echvi_1879 0.53 -1.7 2,206,552 - Echvi_1879 0.54 +1.1 2,206,623 + Echvi_1879 0.58 -0.2 2,206,624 - Echvi_1879 0.58 +0.9 2,206,661 + Echvi_1879 0.61 +1.0 2,206,661 + Echvi_1879 0.61 -0.4 2,206,662 - Echvi_1879 0.61 -1.2 2,206,662 - Echvi_1879 0.61 -0.5 2,206,781 + Echvi_1879 0.69 -0.5 2,206,781 + Echvi_1879 0.69 +0.4 2,206,805 + Echvi_1879 0.70 -0.5 2,206,824 - Echvi_1879 0.72 +0.1 2,206,929 + Echvi_1879 0.79 +1.0 2,206,929 + Echvi_1879 0.79 +1.2 2,207,021 + Echvi_1879 0.85 -1.6 2,207,036 - Echvi_1879 0.86 -0.9 2,207,068 - Echvi_1879 0.88 -0.1 2,207,098 + -1.0 2,207,099 - -0.2 2,207,260 - -0.2 2,207,264 - +0.5 2,207,264 - +0.5 2,207,267 - -1.1 2,207,267 - -1.2 2,207,295 + -0.6 2,207,299 - -0.7 2,207,312 + +0.5 2,207,312 + -2.4 2,207,359 + +1.6 2,207,359 + -1.3 2,207,364 - -0.4 2,207,366 + -1.1 2,207,411 + +0.8 2,207,467 + Echvi_1880 0.10 +0.6 2,207,491 - Echvi_1880 0.11 -1.2 2,207,629 + Echvi_1880 0.19 +0.3 2,207,663 + Echvi_1880 0.20 +0.2 2,207,663 + Echvi_1880 0.20 -0.4 2,207,663 + Echvi_1880 0.20 -0.9 2,207,663 + Echvi_1880 0.20 +0.7 2,207,663 + +0.1 2,207,663 + Echvi_1880 0.20 +0.1 2,207,663 + Echvi_1880 0.20 +0.2 2,207,663 + Echvi_1880 0.20 -0.0 2,207,664 - Echvi_1880 0.21 -0.6 2,207,664 - Echvi_1880 0.21 +0.6 2,207,664 - Echvi_1880 0.21 -0.7 2,207,664 - Echvi_1880 0.21 +0.1 2,207,664 - Echvi_1880 0.21 +1.7 2,207,668 - Echvi_1880 0.21 -0.3 2,207,768 - Echvi_1880 0.26 -3.1 2,207,782 + Echvi_1880 0.27 +1.4 2,207,782 + Echvi_1880 0.27 -0.5 2,207,782 + Echvi_1880 0.27 -0.8 2,207,805 - Echvi_1880 0.28 +1.5 2,207,805 - Echvi_1880 0.28 +0.5 2,207,823 + Echvi_1880 0.29 -0.4 2,207,823 + Echvi_1880 0.29 +0.9 2,207,843 - Echvi_1880 0.30 -0.9 2,207,852 + Echvi_1880 0.31 +3.3 2,207,853 - Echvi_1880 0.31 -1.6 2,208,004 + Echvi_1880 0.39 +0.6 2,208,139 + Echvi_1880 0.46 +0.4 2,208,204 + Echvi_1880 0.49 +1.9 2,208,205 - Echvi_1880 0.49 +1.0 2,208,205 - Echvi_1880 0.49 +1.4
Or see this region's nucleotide sequence