Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1569

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.032 mg/ml
1,802,044	+		Echvi_1568	0.30	+0.0
1,802,045	-		Echvi_1568	0.31	+1.1
1,802,157	+		Echvi_1568	0.39	-1.4
1,802,157	+		Echvi_1568	0.39	+0.4
1,802,158	-		Echvi_1568	0.39	+0.6
1,802,199	+		Echvi_1568	0.42	-1.1
1,802,199	+		Echvi_1568	0.42	+0.2
1,802,199	+		Echvi_1568	0.42	-0.2
1,802,200	-		Echvi_1568	0.42	+3.7
1,802,237	+		Echvi_1568	0.45	+2.7
1,802,243	+		Echvi_1568	0.45	-2.0
1,802,244	-		Echvi_1568	0.45	+0.7
1,802,250	-		Echvi_1568	0.45	+0.8
1,802,250	-		Echvi_1568	0.45	+0.2
1,802,294	-		Echvi_1568	0.49	-0.7
1,802,294	-		Echvi_1568	0.49	-0.3
1,802,306	+		Echvi_1568	0.50	+0.7
1,802,306	+		Echvi_1568	0.50	-0.4
1,802,306	+		Echvi_1568	0.50	-0.1
1,802,307	-		Echvi_1568	0.50	+1.1
1,802,429	-		Echvi_1568	0.59	-0.8
1,802,537	+		Echvi_1568	0.66	-2.6
1,802,538	-		Echvi_1568	0.66	-1.8
1,802,538	-		Echvi_1568	0.66	+0.7
1,802,637	+		Echvi_1568	0.74	+0.9
1,802,698	+		Echvi_1568	0.78	-1.5
1,802,829	+		Echvi_1568	0.88	-0.8
1,802,830	-		Echvi_1568	0.88	+0.5
1,802,830	-		Echvi_1568	0.88	-0.1
1,803,018	+				-0.8
1,803,019	-				-3.2
1,803,033	+				-2.2
1,803,033	+				-1.7
1,803,033	+				+0.6
1,803,034	-				-0.6
1,803,034	-				-2.7
1,803,145	+		Echvi_1569	0.15	-2.6
1,803,145	+		Echvi_1569	0.15	+2.3
1,803,145	+		Echvi_1569	0.15	-0.8
1,803,145	+		Echvi_1569	0.15	-0.8
1,803,145	+		Echvi_1569	0.15	-0.5
1,803,145	+		Echvi_1569	0.15	+0.4
1,803,145	+		Echvi_1569	0.15	-2.6
1,803,176	-		Echvi_1569	0.20	+0.9
1,803,332	-		Echvi_1569	0.41	-0.6
1,803,407	+		Echvi_1569	0.51	-0.0
1,803,407	+		Echvi_1569	0.51	-0.2
1,803,407	+		Echvi_1569	0.51	-3.0
1,803,431	+		Echvi_1569	0.54	-0.1
1,803,431	+		Echvi_1569	0.54	-0.2
1,803,432	-		Echvi_1569	0.54	-1.2
1,803,432	-		Echvi_1569	0.54	+0.2
1,803,432	-		Echvi_1569	0.54	-0.2
1,803,432	-		Echvi_1569	0.54	+0.2
1,803,432	-		Echvi_1569	0.54	-2.0
1,803,432	-		Echvi_1569	0.54	+0.9
1,803,509	+		Echvi_1569	0.65	+0.4
1,803,510	-		Echvi_1569	0.65	-0.4
1,803,510	-		Echvi_1569	0.65	+2.3
1,803,521	+		Echvi_1569	0.66	+3.1
1,803,521	+		Echvi_1569	0.66	-2.3
1,803,521	+		Echvi_1569	0.66	-0.1
1,803,527	+		Echvi_1569	0.67	-1.1
1,803,528	-		Echvi_1569	0.67	-0.0
1,803,528	-		Echvi_1569	0.67	-1.6
1,803,532	+		Echvi_1569	0.68	-1.0
1,803,533	-		Echvi_1569	0.68	-0.2
1,803,559	-		Echvi_1569	0.71	-1.9
1,803,667	-		Echvi_1569	0.86	-0.6
1,803,738	-				-1.1
1,803,738	-				-1.2
1,803,741	+				+0.2
1,803,741	+				+0.3
1,803,741	+				+0.2
1,803,741	+				-1.0
1,803,741	+				-0.3
1,803,741	+				-0.3
1,803,742	-				+1.7
1,803,742	-				+2.0
1,803,742	-				-1.5
1,803,749	+				-1.1
1,803,749	+				-2.6
1,803,750	-				-0.3
1,803,750	-				-3.0
1,803,751	+				-1.6
1,803,752	-				+2.0
1,803,761	+				-2.0
1,803,770	-				-3.5
1,803,784	-				+0.3
1,803,795	+				-1.7
1,803,796	-		Echvi_1570	0.11	+0.0
1,803,836	+		Echvi_1570	0.41	-1.5
1,803,837	-		Echvi_1570	0.42	-0.1
1,803,847	-		Echvi_1570	0.49	-0.8
1,803,901	+				-1.1
1,803,902	-				+0.8
1,803,902	-				-1.1
1,803,902	-				+2.6
1,803,902	-				-2.6
1,803,906	+				-1.0
1,803,907	-				-2.6
1,803,932	+				-1.6
1,803,932	+				+0.2
1,803,932	+				-3.6
1,803,933	-				-0.3
1,803,981	+				-1.2
1,803,991	-				-0.4
1,804,008	+				+1.1
1,804,009	-				+0.1
1,804,075	-				-1.1
1,804,076	+				-1.4
1,804,077	-				-0.4
1,804,077	-				+0.2
1,804,119	+				-0.9
1,804,120	-				-0.3
1,804,229	-				-0.7
1,804,230	+				-0.4
1,804,231	-				-1.8
1,804,319	+		Echvi_1571	0.12	+0.3
1,804,443	+		Echvi_1571	0.17	-0.4
1,804,444	-		Echvi_1571	0.17	+1.2
1,804,444	-		Echvi_1571	0.17	-2.4
1,804,526	+		Echvi_1571	0.21	-0.8
1,804,527	-		Echvi_1571	0.21	+0.1
1,804,527	-		Echvi_1571	0.21	-1.6
1,804,570	+		Echvi_1571	0.22	-1.2
1,804,570	+		Echvi_1571	0.22	-1.3
1,804,570	+		Echvi_1571	0.22	-2.9
1,804,570	+		Echvi_1571	0.22	-1.0
1,804,570	+		Echvi_1571	0.22	+0.0
1,804,570	+		Echvi_1571	0.22	-0.8
1,804,570	+		Echvi_1571	0.22	+0.3
1,804,571	-		Echvi_1571	0.23	+0.7
1,804,571	-		Echvi_1571	0.23	-0.6
1,804,572	+		Echvi_1571	0.23	+0.6
1,804,601	+		Echvi_1571	0.24	-2.8
1,804,734	-		Echvi_1571	0.29	+0.5
1,804,735	-		Echvi_1571	0.29	-0.7
1,804,735	-		Echvi_1571	0.29	-1.2
1,804,735	-		Echvi_1571	0.29	+0.4
1,804,739	-		Echvi_1571	0.29	+0.1
1,804,766	-		Echvi_1571	0.30	-0.8