Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0872

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0871 and Echvi_0872 are separated by 96 nucleotidesEchvi_0872 and Echvi_0873 are separated by 270 nucleotides Echvi_0871: Echvi_0871 - 7-keto-8-aminopelargonate synthetase and related enzymes, at 994,019 to 995,077 _0871 Echvi_0872: Echvi_0872 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 995,174 to 996,184 _0872 Echvi_0873: Echvi_0873 - Predicted carboxypeptidase, at 996,455 to 997,948 _0873 Position (kb) 995 996 997Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 994.261 kb on + strand, within Echvi_0871at 994.261 kb on + strand, within Echvi_0871at 994.274 kb on + strand, within Echvi_0871at 994.275 kb on - strand, within Echvi_0871at 994.294 kb on - strand, within Echvi_0871at 994.400 kb on + strand, within Echvi_0871at 994.400 kb on + strand, within Echvi_0871at 994.400 kb on + strand, within Echvi_0871at 994.485 kb on + strand, within Echvi_0871at 994.494 kb on + strand, within Echvi_0871at 994.494 kb on + strand, within Echvi_0871at 994.495 kb on - strand, within Echvi_0871at 994.537 kb on + strand, within Echvi_0871at 994.545 kb on + strand, within Echvi_0871at 994.545 kb on + strand, within Echvi_0871at 994.546 kb on - strand, within Echvi_0871at 994.548 kb on + strand, within Echvi_0871at 994.575 kb on - strand, within Echvi_0871at 994.606 kb on + strand, within Echvi_0871at 994.606 kb on + strand, within Echvi_0871at 994.761 kb on - strand, within Echvi_0871at 994.779 kb on + strand, within Echvi_0871at 994.779 kb on + strand, within Echvi_0871at 994.881 kb on + strand, within Echvi_0871at 994.882 kb on - strand, within Echvi_0871at 994.903 kb on + strand, within Echvi_0871at 994.903 kb on + strand, within Echvi_0871at 994.955 kb on - strand, within Echvi_0871at 994.993 kb on - strandat 995.039 kb on - strandat 995.041 kb on + strandat 995.041 kb on + strandat 995.041 kb on + strandat 995.042 kb on - strandat 995.042 kb on - strandat 995.042 kb on - strandat 995.109 kb on - strandat 995.111 kb on - strandat 995.111 kb on - strandat 995.231 kb on + strandat 995.231 kb on + strandat 995.231 kb on + strandat 995.232 kb on - strandat 995.232 kb on - strandat 995.289 kb on + strand, within Echvi_0872at 995.348 kb on - strand, within Echvi_0872at 995.348 kb on - strand, within Echvi_0872at 995.354 kb on + strand, within Echvi_0872at 995.354 kb on + strand, within Echvi_0872at 995.354 kb on + strand, within Echvi_0872at 995.355 kb on - strand, within Echvi_0872at 995.388 kb on + strand, within Echvi_0872at 995.388 kb on + strand, within Echvi_0872at 995.388 kb on + strand, within Echvi_0872at 995.489 kb on - strand, within Echvi_0872at 995.518 kb on + strand, within Echvi_0872at 995.518 kb on + strand, within Echvi_0872at 995.518 kb on + strand, within Echvi_0872at 995.529 kb on + strand, within Echvi_0872at 995.600 kb on + strand, within Echvi_0872at 995.601 kb on - strand, within Echvi_0872at 995.613 kb on + strand, within Echvi_0872at 995.613 kb on + strand, within Echvi_0872at 995.614 kb on - strand, within Echvi_0872at 995.618 kb on - strand, within Echvi_0872at 995.655 kb on - strand, within Echvi_0872at 995.674 kb on + strand, within Echvi_0872at 995.674 kb on + strand, within Echvi_0872at 995.731 kb on + strand, within Echvi_0872at 995.731 kb on + strand, within Echvi_0872at 995.731 kb on + strand, within Echvi_0872at 995.731 kb on + strand, within Echvi_0872at 995.732 kb on - strandat 995.733 kb on + strand, within Echvi_0872at 995.839 kb on - strand, within Echvi_0872at 995.845 kb on - strand, within Echvi_0872at 995.845 kb on - strand, within Echvi_0872at 995.869 kb on + strand, within Echvi_0872at 995.927 kb on + strand, within Echvi_0872at 995.928 kb on - strand, within Echvi_0872at 995.935 kb on + strand, within Echvi_0872at 995.935 kb on + strand, within Echvi_0872at 995.935 kb on + strand, within Echvi_0872at 995.935 kb on + strand, within Echvi_0872at 995.936 kb on - strand, within Echvi_0872at 995.936 kb on - strand, within Echvi_0872at 995.936 kb on - strand, within Echvi_0872at 995.962 kb on + strand, within Echvi_0872at 996.036 kb on + strand, within Echvi_0872at 996.037 kb on - strand, within Echvi_0872at 996.052 kb on + strand, within Echvi_0872at 996.069 kb on + strand, within Echvi_0872at 996.093 kb on - strandat 996.137 kb on - strandat 996.143 kb on - strandat 996.143 kb on - strandat 996.170 kb on + strandat 996.214 kb on + strandat 996.215 kb on - strandat 996.220 kb on + strandat 996.220 kb on + strandat 996.221 kb on - strandat 996.266 kb on - strandat 996.327 kb on + strandat 996.353 kb on + strandat 996.354 kb on - strandat 996.408 kb on - strandat 996.435 kb on - strandat 996.435 kb on - strandat 996.486 kb on + strandat 996.504 kb on + strandat 996.596 kb on + strandat 996.731 kb on + strand, within Echvi_0873at 996.817 kb on + strand, within Echvi_0873at 996.818 kb on - strand, within Echvi_0873at 996.818 kb on - strand, within Echvi_0873at 996.846 kb on - strand, within Echvi_0873at 996.853 kb on + strand, within Echvi_0873at 996.855 kb on + strand, within Echvi_0873at 996.958 kb on - strand, within Echvi_0873at 997.062 kb on + strand, within Echvi_0873at 997.062 kb on + strand, within Echvi_0873at 997.062 kb on + strand, within Echvi_0873at 997.064 kb on + strand, within Echvi_0873at 997.065 kb on - strand, within Echvi_0873at 997.065 kb on - strand, within Echvi_0873at 997.067 kb on + strand, within Echvi_0873at 997.067 kb on + strand, within Echvi_0873at 997.067 kb on + strand, within Echvi_0873at 997.068 kb on - strand, within Echvi_0873at 997.068 kb on - strand, within Echvi_0873at 997.068 kb on - strand, within Echvi_0873at 997.068 kb on - strand, within Echvi_0873at 997.069 kb on + strand, within Echvi_0873at 997.069 kb on + strand, within Echvi_0873at 997.070 kb on - strand, within Echvi_0873at 997.127 kb on + strand, within Echvi_0873at 997.128 kb on - strand, within Echvi_0873at 997.140 kb on + strand, within Echvi_0873at 997.141 kb on - strand, within Echvi_0873at 997.141 kb on - strand, within Echvi_0873

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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994,261 + Echvi_0871 0.23 -0.2
994,261 + Echvi_0871 0.23 -0.5
994,274 + Echvi_0871 0.24 +0.5
994,275 - Echvi_0871 0.24 +2.1
994,294 - Echvi_0871 0.26 +0.3
994,400 + Echvi_0871 0.36 +0.1
994,400 + Echvi_0871 0.36 -0.2
994,400 + Echvi_0871 0.36 -1.4
994,485 + Echvi_0871 0.44 +0.2
994,494 + Echvi_0871 0.45 -1.9
994,494 + Echvi_0871 0.45 -1.1
994,495 - Echvi_0871 0.45 -0.2
994,537 + Echvi_0871 0.49 -0.3
994,545 + Echvi_0871 0.50 -0.6
994,545 + Echvi_0871 0.50 -0.4
994,546 - Echvi_0871 0.50 -0.3
994,548 + Echvi_0871 0.50 +1.8
994,575 - Echvi_0871 0.53 -1.2
994,606 + Echvi_0871 0.55 +0.6
994,606 + Echvi_0871 0.55 +0.7
994,761 - Echvi_0871 0.70 +0.2
994,779 + Echvi_0871 0.72 +0.2
994,779 + Echvi_0871 0.72 -0.5
994,881 + Echvi_0871 0.81 -0.8
994,882 - Echvi_0871 0.81 -0.5
994,903 + Echvi_0871 0.83 -0.0
994,903 + Echvi_0871 0.83 +1.3
994,955 - Echvi_0871 0.88 +1.5
994,993 - -0.8
995,039 - +0.2
995,041 + -0.5
995,041 + -0.5
995,041 + -0.3
995,042 - +0.4
995,042 - -1.9
995,042 - -0.7
995,109 - -1.0
995,111 - +0.8
995,111 - +1.8
995,231 + +1.3
995,231 + +0.7
995,231 + +0.8
995,232 - +0.9
995,232 - -0.4
995,289 + Echvi_0872 0.11 +1.0
995,348 - Echvi_0872 0.17 -0.1
995,348 - Echvi_0872 0.17 -0.8
995,354 + Echvi_0872 0.18 -0.8
995,354 + Echvi_0872 0.18 +0.9
995,354 + Echvi_0872 0.18 +0.0
995,355 - Echvi_0872 0.18 -0.2
995,388 + Echvi_0872 0.21 +0.2
995,388 + Echvi_0872 0.21 -0.5
995,388 + Echvi_0872 0.21 +1.8
995,489 - Echvi_0872 0.31 +0.4
995,518 + Echvi_0872 0.34 +0.6
995,518 + Echvi_0872 0.34 +0.9
995,518 + Echvi_0872 0.34 -1.0
995,529 + Echvi_0872 0.35 -2.7
995,600 + Echvi_0872 0.42 -0.1
995,601 - Echvi_0872 0.42 -1.5
995,613 + Echvi_0872 0.43 -2.1
995,613 + Echvi_0872 0.43 +1.1
995,614 - Echvi_0872 0.44 +0.2
995,618 - Echvi_0872 0.44 +1.1
995,655 - Echvi_0872 0.48 +0.5
995,674 + Echvi_0872 0.49 +0.6
995,674 + Echvi_0872 0.49 +0.7
995,731 + Echvi_0872 0.55 -1.6
995,731 + Echvi_0872 0.55 +1.8
995,731 + Echvi_0872 0.55 +0.1
995,731 + Echvi_0872 0.55 +1.5
995,732 - +0.5
995,733 + Echvi_0872 0.55 +1.3
995,839 - Echvi_0872 0.66 +0.9
995,845 - Echvi_0872 0.66 -2.0
995,845 - Echvi_0872 0.66 -1.0
995,869 + Echvi_0872 0.69 +2.8
995,927 + Echvi_0872 0.74 -0.2
995,928 - Echvi_0872 0.75 +0.0
995,935 + Echvi_0872 0.75 +0.8
995,935 + Echvi_0872 0.75 +0.8
995,935 + Echvi_0872 0.75 +1.5
995,935 + Echvi_0872 0.75 +0.1
995,936 - Echvi_0872 0.75 +0.7
995,936 - Echvi_0872 0.75 +1.4
995,936 - Echvi_0872 0.75 +0.1
995,962 + Echvi_0872 0.78 +0.2
996,036 + Echvi_0872 0.85 +1.1
996,037 - Echvi_0872 0.85 +1.1
996,052 + Echvi_0872 0.87 -1.0
996,069 + Echvi_0872 0.89 +1.0
996,093 - -2.2
996,137 - +0.1
996,143 - -0.8
996,143 - -2.3
996,170 + -1.8
996,214 + +0.8
996,215 - +0.2
996,220 + +0.6
996,220 + -1.1
996,221 - -0.0
996,266 - -0.2
996,327 + +0.8
996,353 + -1.4
996,354 - -0.0
996,408 - +0.7
996,435 - -1.8
996,435 - -0.5
996,486 + -0.3
996,504 + +0.8
996,596 + -1.2
996,731 + Echvi_0873 0.18 -0.7
996,817 + Echvi_0873 0.24 -1.1
996,818 - Echvi_0873 0.24 -0.2
996,818 - Echvi_0873 0.24 +0.5
996,846 - Echvi_0873 0.26 -0.2
996,853 + Echvi_0873 0.27 -1.4
996,855 + Echvi_0873 0.27 -0.2
996,958 - Echvi_0873 0.34 +0.1
997,062 + Echvi_0873 0.41 +0.1
997,062 + Echvi_0873 0.41 +1.1
997,062 + Echvi_0873 0.41 -1.0
997,064 + Echvi_0873 0.41 -0.1
997,065 - Echvi_0873 0.41 -2.3
997,065 - Echvi_0873 0.41 -0.5
997,067 + Echvi_0873 0.41 +0.5
997,067 + Echvi_0873 0.41 +0.3
997,067 + Echvi_0873 0.41 -3.5
997,068 - Echvi_0873 0.41 +0.1
997,068 - Echvi_0873 0.41 -0.6
997,068 - Echvi_0873 0.41 -0.4
997,068 - Echvi_0873 0.41 -0.8
997,069 + Echvi_0873 0.41 +0.5
997,069 + Echvi_0873 0.41 -0.5
997,070 - Echvi_0873 0.41 +0.1
997,127 + Echvi_0873 0.45 +0.3
997,128 - Echvi_0873 0.45 +0.7
997,140 + Echvi_0873 0.46 -0.4
997,141 - Echvi_0873 0.46 +1.8
997,141 - Echvi_0873 0.46 -0.9

Or see this region's nucleotide sequence