Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0840

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0839 and Echvi_0840 are separated by 72 nucleotidesEchvi_0840 and Echvi_0841 are separated by 513 nucleotides Echvi_0839: Echvi_0839 - Predicted membrane protein, at 959,113 to 959,811 _0839 Echvi_0840: Echvi_0840 - hypothetical protein, at 959,884 to 960,039 _0840 Echvi_0841: Echvi_0841 - aspartyl-tRNA synthetase, bacterial type, at 960,553 to 962,307 _0841 Position (kb) 959 960 961Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 958.915 kb on - strandat 958.915 kb on - strandat 958.976 kb on + strandat 958.989 kb on + strandat 958.993 kb on + strandat 958.993 kb on + strandat 958.994 kb on - strandat 958.997 kb on + strandat 958.997 kb on + strandat 958.997 kb on + strandat 958.998 kb on - strandat 958.998 kb on - strandat 958.998 kb on - strandat 959.054 kb on + strandat 959.055 kb on - strandat 959.055 kb on - strandat 959.060 kb on - strandat 959.129 kb on + strandat 959.140 kb on + strandat 959.140 kb on + strandat 959.140 kb on + strandat 959.140 kb on + strandat 959.140 kb on + strandat 959.141 kb on - strandat 959.141 kb on - strandat 959.141 kb on - strandat 959.141 kb on - strandat 959.146 kb on + strandat 959.147 kb on - strandat 959.150 kb on + strandat 959.150 kb on + strandat 959.210 kb on - strand, within Echvi_0839at 959.210 kb on - strand, within Echvi_0839at 959.210 kb on - strand, within Echvi_0839at 959.210 kb on - strand, within Echvi_0839at 959.210 kb on - strand, within Echvi_0839at 959.211 kb on + strand, within Echvi_0839at 959.211 kb on + strand, within Echvi_0839at 959.211 kb on + strand, within Echvi_0839at 959.212 kb on - strand, within Echvi_0839at 959.212 kb on - strand, within Echvi_0839at 959.212 kb on - strand, within Echvi_0839at 959.232 kb on - strand, within Echvi_0839at 959.232 kb on - strand, within Echvi_0839at 959.232 kb on - strand, within Echvi_0839at 959.232 kb on - strand, within Echvi_0839at 959.268 kb on - strand, within Echvi_0839at 959.393 kb on + strand, within Echvi_0839at 959.398 kb on + strand, within Echvi_0839at 959.398 kb on + strand, within Echvi_0839at 959.399 kb on - strand, within Echvi_0839at 959.399 kb on - strand, within Echvi_0839at 959.399 kb on - strand, within Echvi_0839at 959.399 kb on - strand, within Echvi_0839at 959.400 kb on + strand, within Echvi_0839at 959.400 kb on + strand, within Echvi_0839at 959.400 kb on + strand, within Echvi_0839at 959.401 kb on - strand, within Echvi_0839at 959.401 kb on - strand, within Echvi_0839at 959.401 kb on - strand, within Echvi_0839at 959.401 kb on - strand, within Echvi_0839at 959.401 kb on - strand, within Echvi_0839at 959.474 kb on - strand, within Echvi_0839at 959.488 kb on + strand, within Echvi_0839at 959.507 kb on + strand, within Echvi_0839at 959.510 kb on - strand, within Echvi_0839at 959.510 kb on - strand, within Echvi_0839at 959.560 kb on + strand, within Echvi_0839at 959.620 kb on - strand, within Echvi_0839at 959.620 kb on - strand, within Echvi_0839at 959.631 kb on + strand, within Echvi_0839at 959.631 kb on + strand, within Echvi_0839at 959.632 kb on - strand, within Echvi_0839at 959.632 kb on - strand, within Echvi_0839at 959.633 kb on + strand, within Echvi_0839at 959.639 kb on + strand, within Echvi_0839at 959.639 kb on + strand, within Echvi_0839at 959.639 kb on + strand, within Echvi_0839at 959.639 kb on + strand, within Echvi_0839at 959.640 kb on - strand, within Echvi_0839at 959.640 kb on - strand, within Echvi_0839at 959.640 kb on - strand, within Echvi_0839at 959.640 kb on - strand, within Echvi_0839at 959.640 kb on - strand, within Echvi_0839at 959.640 kb on - strand, within Echvi_0839at 959.643 kb on + strand, within Echvi_0839at 959.646 kb on - strand, within Echvi_0839at 959.646 kb on - strand, within Echvi_0839at 959.676 kb on + strand, within Echvi_0839at 959.676 kb on + strand, within Echvi_0839at 959.677 kb on - strand, within Echvi_0839at 959.708 kb on + strand, within Echvi_0839at 959.708 kb on + strand, within Echvi_0839at 959.823 kb on + strandat 959.848 kb on + strandat 959.848 kb on + strandat 959.848 kb on + strandat 959.848 kb on + strandat 959.848 kb on + strandat 959.848 kb on + strandat 959.849 kb on - strandat 959.849 kb on - strandat 959.861 kb on + strandat 959.861 kb on + strandat 959.927 kb on + strand, within Echvi_0840at 959.928 kb on - strand, within Echvi_0840at 959.928 kb on - strand, within Echvi_0840at 959.938 kb on - strand, within Echvi_0840at 959.938 kb on - strand, within Echvi_0840at 959.962 kb on - strand, within Echvi_0840at 960.011 kb on + strand, within Echvi_0840at 960.011 kb on + strand, within Echvi_0840at 960.011 kb on + strand, within Echvi_0840at 960.011 kb on + strand, within Echvi_0840at 960.013 kb on + strand, within Echvi_0840at 960.100 kb on - strandat 960.111 kb on + strandat 960.180 kb on - strandat 960.195 kb on + strandat 960.195 kb on + strandat 960.232 kb on + strandat 960.232 kb on + strandat 960.233 kb on - strandat 960.242 kb on - strandat 960.276 kb on + strandat 960.277 kb on - strandat 960.277 kb on - strandat 960.303 kb on + strandat 960.304 kb on - strandat 960.309 kb on + strandat 960.318 kb on - strandat 960.378 kb on + strandat 960.379 kb on - strandat 960.423 kb on + strandat 960.424 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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958,915 - +0.4
958,915 - -0.0
958,976 + -1.8
958,989 + +0.4
958,993 + +0.0
958,993 + +0.2
958,994 - -0.6
958,997 + -0.1
958,997 + +0.8
958,997 + +0.6
958,998 - +0.1
958,998 - +0.0
958,998 - +0.2
959,054 + -0.6
959,055 - -0.6
959,055 - -0.8
959,060 - +0.1
959,129 + +1.0
959,140 + +2.0
959,140 + -0.6
959,140 + +0.8
959,140 + +0.2
959,140 + -0.2
959,141 - +1.4
959,141 - -1.2
959,141 - -0.5
959,141 - -0.5
959,146 + +0.3
959,147 - -0.0
959,150 + +0.3
959,150 + +0.2
959,210 - Echvi_0839 0.14 -0.7
959,210 - Echvi_0839 0.14 +1.0
959,210 - Echvi_0839 0.14 +0.1
959,210 - Echvi_0839 0.14 +0.4
959,210 - Echvi_0839 0.14 +0.0
959,211 + Echvi_0839 0.14 -0.5
959,211 + Echvi_0839 0.14 +1.6
959,211 + Echvi_0839 0.14 +0.6
959,212 - Echvi_0839 0.14 +0.2
959,212 - Echvi_0839 0.14 +0.3
959,212 - Echvi_0839 0.14 +1.0
959,232 - Echvi_0839 0.17 +0.0
959,232 - Echvi_0839 0.17 +0.1
959,232 - Echvi_0839 0.17 -0.6
959,232 - Echvi_0839 0.17 -0.6
959,268 - Echvi_0839 0.22 -0.0
959,393 + Echvi_0839 0.40 -1.0
959,398 + Echvi_0839 0.41 +0.1
959,398 + Echvi_0839 0.41 +0.0
959,399 - Echvi_0839 0.41 -0.7
959,399 - Echvi_0839 0.41 -0.8
959,399 - Echvi_0839 0.41 -2.0
959,399 - Echvi_0839 0.41 -1.7
959,400 + Echvi_0839 0.41 -0.0
959,400 + Echvi_0839 0.41 +0.5
959,400 + Echvi_0839 0.41 -0.3
959,401 - Echvi_0839 0.41 +0.9
959,401 - Echvi_0839 0.41 +1.0
959,401 - Echvi_0839 0.41 +0.1
959,401 - Echvi_0839 0.41 +0.8
959,401 - Echvi_0839 0.41 -0.6
959,474 - Echvi_0839 0.52 +2.8
959,488 + Echvi_0839 0.54 -2.8
959,507 + Echvi_0839 0.56 +2.0
959,510 - Echvi_0839 0.57 -0.1
959,510 - Echvi_0839 0.57 -1.6
959,560 + Echvi_0839 0.64 -2.2
959,620 - Echvi_0839 0.73 -0.6
959,620 - Echvi_0839 0.73 -0.1
959,631 + Echvi_0839 0.74 -1.0
959,631 + Echvi_0839 0.74 -0.1
959,632 - Echvi_0839 0.74 -0.7
959,632 - Echvi_0839 0.74 -1.0
959,633 + Echvi_0839 0.74 +0.8
959,639 + Echvi_0839 0.75 -2.0
959,639 + Echvi_0839 0.75 -0.4
959,639 + Echvi_0839 0.75 +2.0
959,639 + Echvi_0839 0.75 +0.7
959,640 - Echvi_0839 0.75 -0.2
959,640 - Echvi_0839 0.75 +1.8
959,640 - Echvi_0839 0.75 -1.2
959,640 - Echvi_0839 0.75 -0.4
959,640 - Echvi_0839 0.75 +2.1
959,640 - Echvi_0839 0.75 +1.4
959,643 + Echvi_0839 0.76 -1.0
959,646 - Echvi_0839 0.76 +0.3
959,646 - Echvi_0839 0.76 -0.6
959,676 + Echvi_0839 0.81 +0.9
959,676 + Echvi_0839 0.81 +0.1
959,677 - Echvi_0839 0.81 +1.0
959,708 + Echvi_0839 0.85 -1.2
959,708 + Echvi_0839 0.85 -0.3
959,823 + -0.2
959,848 + -0.5
959,848 + +1.0
959,848 + -1.2
959,848 + -0.4
959,848 + +0.9
959,848 + +1.1
959,849 - +1.7
959,849 - -0.9
959,861 + -0.1
959,861 + -0.5
959,927 + Echvi_0840 0.28 +0.2
959,928 - Echvi_0840 0.28 +0.0
959,928 - Echvi_0840 0.28 -0.0
959,938 - Echvi_0840 0.35 -0.7
959,938 - Echvi_0840 0.35 -2.1
959,962 - Echvi_0840 0.50 -0.5
960,011 + Echvi_0840 0.81 -0.0
960,011 + Echvi_0840 0.81 +1.6
960,011 + Echvi_0840 0.81 +0.4
960,011 + Echvi_0840 0.81 -0.2
960,013 + Echvi_0840 0.83 +1.3
960,100 - +1.9
960,111 + +0.1
960,180 - -0.0
960,195 + -1.6
960,195 + +1.0
960,232 + +1.8
960,232 + -0.7
960,233 - -4.0
960,242 - -1.0
960,276 + -2.2
960,277 - -0.4
960,277 - -2.1
960,303 + +2.1
960,304 - +0.3
960,309 + -1.5
960,318 - -0.5
960,378 + -0.5
960,379 - +0.0
960,423 + +0.5
960,424 - +0.6

Or see this region's nucleotide sequence