Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0829 and Echvi_0830 are separated by 191 nucleotides Echvi_0830 and Echvi_0831 are separated by 18 nucleotides Echvi_0831 and Echvi_0832 are separated by 10 nucleotides
Echvi_0829: Echvi_0829 - Membrane-associated phospholipid phosphatase, at 945,802 to 946,518
_0829
Echvi_0830: Echvi_0830 - 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family, at 946,710 to 948,221
_0830
Echvi_0831: Echvi_0831 - hypothetical protein, at 948,240 to 948,746
_0831
Echvi_0832: Echvi_0832 - hypothetical protein, at 948,757 to 949,425
_0832
Position (kb) 946
947
948
949 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 945.751 kb on + strand at 945.752 kb on - strand at 945.752 kb on - strand at 945.764 kb on - strand at 945.830 kb on - strand at 945.855 kb on + strand at 945.898 kb on + strand, within Echvi_0829 at 945.992 kb on + strand, within Echvi_0829 at 946.002 kb on - strand, within Echvi_0829 at 946.010 kb on - strand, within Echvi_0829 at 946.080 kb on - strand, within Echvi_0829 at 946.148 kb on + strand, within Echvi_0829 at 946.277 kb on + strand, within Echvi_0829 at 946.401 kb on + strand, within Echvi_0829 at 946.428 kb on - strand, within Echvi_0829 at 946.461 kb on + strand at 946.525 kb on + strand at 946.525 kb on + strand at 946.525 kb on + strand at 946.526 kb on - strand at 946.632 kb on + strand at 946.632 kb on + strand at 946.633 kb on - strand at 946.682 kb on + strand at 946.682 kb on + strand at 946.682 kb on + strand at 946.683 kb on - strand at 946.784 kb on + strand at 946.828 kb on - strand at 946.861 kb on - strand at 946.864 kb on - strand, within Echvi_0830 at 946.891 kb on - strand, within Echvi_0830 at 946.893 kb on - strand, within Echvi_0830 at 946.893 kb on - strand, within Echvi_0830 at 946.898 kb on + strand, within Echvi_0830 at 946.898 kb on + strand, within Echvi_0830 at 946.899 kb on - strand, within Echvi_0830 at 946.923 kb on - strand, within Echvi_0830 at 946.938 kb on - strand, within Echvi_0830 at 946.942 kb on + strand, within Echvi_0830 at 946.943 kb on - strand, within Echvi_0830 at 947.005 kb on - strand, within Echvi_0830 at 947.005 kb on - strand, within Echvi_0830 at 947.058 kb on + strand, within Echvi_0830 at 947.059 kb on - strand, within Echvi_0830 at 947.059 kb on - strand, within Echvi_0830 at 947.119 kb on + strand, within Echvi_0830 at 947.127 kb on + strand, within Echvi_0830 at 947.224 kb on + strand, within Echvi_0830 at 947.224 kb on + strand, within Echvi_0830 at 947.224 kb on + strand, within Echvi_0830 at 947.224 kb on + strand, within Echvi_0830 at 947.224 kb on + strand, within Echvi_0830 at 947.225 kb on - strand, within Echvi_0830 at 947.232 kb on - strand, within Echvi_0830 at 947.264 kb on - strand, within Echvi_0830 at 947.295 kb on + strand, within Echvi_0830 at 947.296 kb on - strand, within Echvi_0830 at 947.296 kb on - strand, within Echvi_0830 at 947.301 kb on + strand, within Echvi_0830 at 947.399 kb on - strand, within Echvi_0830 at 947.399 kb on - strand, within Echvi_0830 at 947.442 kb on + strand, within Echvi_0830 at 947.443 kb on - strand, within Echvi_0830 at 947.454 kb on + strand, within Echvi_0830 at 947.455 kb on - strand, within Echvi_0830 at 947.477 kb on + strand, within Echvi_0830 at 947.478 kb on - strand, within Echvi_0830 at 947.492 kb on + strand, within Echvi_0830 at 947.501 kb on + strand, within Echvi_0830 at 947.532 kb on + strand, within Echvi_0830 at 947.533 kb on - strand, within Echvi_0830 at 947.670 kb on + strand, within Echvi_0830 at 947.670 kb on + strand, within Echvi_0830 at 947.706 kb on + strand, within Echvi_0830 at 947.711 kb on + strand, within Echvi_0830 at 947.711 kb on + strand, within Echvi_0830 at 947.715 kb on + strand, within Echvi_0830 at 947.716 kb on - strand, within Echvi_0830 at 947.779 kb on + strand, within Echvi_0830 at 947.780 kb on - strand, within Echvi_0830 at 947.869 kb on + strand, within Echvi_0830 at 947.885 kb on - strand, within Echvi_0830 at 947.897 kb on + strand, within Echvi_0830 at 947.897 kb on + strand, within Echvi_0830 at 948.039 kb on + strand, within Echvi_0830 at 948.039 kb on + strand, within Echvi_0830 at 948.040 kb on - strand, within Echvi_0830 at 948.065 kb on + strand, within Echvi_0830 at 948.086 kb on - strand at 948.135 kb on + strand at 948.135 kb on + strand at 948.135 kb on + strand at 948.135 kb on + strand at 948.147 kb on - strand at 948.161 kb on + strand at 948.161 kb on + strand at 948.161 kb on + strand at 948.162 kb on - strand at 948.166 kb on + strand at 948.172 kb on + strand at 948.172 kb on + strand at 948.173 kb on - strand at 948.173 kb on - strand at 948.173 kb on - strand at 948.173 kb on - strand at 948.174 kb on + strand at 948.174 kb on + strand at 948.175 kb on - strand at 948.175 kb on - strand at 948.184 kb on + strand at 948.184 kb on + strand at 948.184 kb on + strand at 948.185 kb on - strand at 948.220 kb on - strand at 948.241 kb on + strand at 948.353 kb on + strand, within Echvi_0831 at 948.388 kb on + strand, within Echvi_0831 at 948.394 kb on + strand, within Echvi_0831 at 948.395 kb on - strand, within Echvi_0831 at 948.395 kb on - strand, within Echvi_0831 at 948.423 kb on - strand, within Echvi_0831 at 948.454 kb on + strand, within Echvi_0831 at 948.454 kb on + strand, within Echvi_0831 at 948.455 kb on - strand, within Echvi_0831 at 948.455 kb on - strand, within Echvi_0831 at 948.498 kb on + strand, within Echvi_0831 at 948.536 kb on + strand, within Echvi_0831 at 948.584 kb on + strand, within Echvi_0831 at 948.585 kb on - strand, within Echvi_0831 at 948.589 kb on + strand at 948.589 kb on + strand, within Echvi_0831 at 948.590 kb on - strand, within Echvi_0831 at 948.590 kb on - strand, within Echvi_0831 at 948.593 kb on + strand, within Echvi_0831 at 948.594 kb on - strand, within Echvi_0831 at 948.617 kb on + strand, within Echvi_0831 at 948.617 kb on + strand, within Echvi_0831 at 948.621 kb on + strand, within Echvi_0831 at 948.621 kb on + strand, within Echvi_0831 at 948.710 kb on + strand at 948.711 kb on - strand at 948.746 kb on + strand at 948.771 kb on + strand at 948.771 kb on + strand at 948.775 kb on + strand at 948.776 kb on - strand at 948.784 kb on + strand at 948.785 kb on - strand at 948.785 kb on - strand at 948.800 kb on + strand at 948.807 kb on + strand at 948.808 kb on - strand at 948.819 kb on - strand at 948.951 kb on - strand, within Echvi_0832 at 949.032 kb on + strand, within Echvi_0832 at 949.032 kb on + strand, within Echvi_0832 at 949.033 kb on - strand, within Echvi_0832 at 949.033 kb on - strand, within Echvi_0832 at 949.034 kb on + strand, within Echvi_0832 at 949.034 kb on + strand, within Echvi_0832 at 949.034 kb on + strand, within Echvi_0832 at 949.035 kb on - strand, within Echvi_0832 at 949.035 kb on - strand, within Echvi_0832 at 949.042 kb on - strand, within Echvi_0832 at 949.042 kb on - strand, within Echvi_0832 at 949.042 kb on - strand, within Echvi_0832 at 949.068 kb on - strand, within Echvi_0832 at 949.068 kb on - strand, within Echvi_0832 at 949.076 kb on + strand, within Echvi_0832 at 949.077 kb on - strand, within Echvi_0832 at 949.087 kb on - strand, within Echvi_0832 at 949.108 kb on - strand, within Echvi_0832 at 949.145 kb on - strand, within Echvi_0832 at 949.192 kb on - strand, within Echvi_0832
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 945,751 + +0.4 945,752 - -1.2 945,752 - +2.6 945,764 - +0.6 945,830 - -1.3 945,855 + -0.7 945,898 + Echvi_0829 0.13 +1.8 945,992 + Echvi_0829 0.26 -2.2 946,002 - Echvi_0829 0.28 -0.3 946,010 - Echvi_0829 0.29 +2.6 946,080 - Echvi_0829 0.39 -0.1 946,148 + Echvi_0829 0.48 -0.2 946,277 + Echvi_0829 0.66 +1.2 946,401 + Echvi_0829 0.84 -2.0 946,428 - Echvi_0829 0.87 -0.7 946,461 + -0.6 946,525 + +0.0 946,525 + +0.0 946,525 + +1.1 946,526 - -2.1 946,632 + -2.4 946,632 + +0.8 946,633 - +2.2 946,682 + +0.2 946,682 + -1.7 946,682 + +0.2 946,683 - +1.6 946,784 + +1.4 946,828 - +1.4 946,861 - +1.2 946,864 - Echvi_0830 0.10 +1.6 946,891 - Echvi_0830 0.12 +1.4 946,893 - Echvi_0830 0.12 +0.3 946,893 - Echvi_0830 0.12 +2.3 946,898 + Echvi_0830 0.12 +1.0 946,898 + Echvi_0830 0.12 +2.1 946,899 - Echvi_0830 0.12 -0.2 946,923 - Echvi_0830 0.14 +0.8 946,938 - Echvi_0830 0.15 +1.1 946,942 + Echvi_0830 0.15 +1.8 946,943 - Echvi_0830 0.15 -3.2 947,005 - Echvi_0830 0.20 +0.4 947,005 - Echvi_0830 0.20 +2.4 947,058 + Echvi_0830 0.23 +0.0 947,059 - Echvi_0830 0.23 +0.2 947,059 - Echvi_0830 0.23 +3.3 947,119 + Echvi_0830 0.27 +1.3 947,127 + Echvi_0830 0.28 +2.2 947,224 + Echvi_0830 0.34 +1.9 947,224 + Echvi_0830 0.34 +1.2 947,224 + Echvi_0830 0.34 +0.3 947,224 + Echvi_0830 0.34 +1.1 947,224 + Echvi_0830 0.34 +2.1 947,225 - Echvi_0830 0.34 +0.4 947,232 - Echvi_0830 0.35 +1.4 947,264 - Echvi_0830 0.37 -0.6 947,295 + Echvi_0830 0.39 +0.7 947,296 - Echvi_0830 0.39 +3.3 947,296 - Echvi_0830 0.39 +0.8 947,301 + Echvi_0830 0.39 +1.5 947,399 - Echvi_0830 0.46 +2.2 947,399 - Echvi_0830 0.46 +0.6 947,442 + Echvi_0830 0.48 +1.3 947,443 - Echvi_0830 0.48 -0.7 947,454 + Echvi_0830 0.49 +1.6 947,455 - Echvi_0830 0.49 +0.5 947,477 + Echvi_0830 0.51 +1.4 947,478 - Echvi_0830 0.51 +1.5 947,492 + Echvi_0830 0.52 +1.2 947,501 + Echvi_0830 0.52 +1.1 947,532 + Echvi_0830 0.54 +0.6 947,533 - Echvi_0830 0.54 +0.4 947,670 + Echvi_0830 0.63 +0.7 947,670 + Echvi_0830 0.63 +2.0 947,706 + Echvi_0830 0.66 +0.9 947,711 + Echvi_0830 0.66 +1.7 947,711 + Echvi_0830 0.66 +1.0 947,715 + Echvi_0830 0.66 +1.6 947,716 - Echvi_0830 0.67 +1.0 947,779 + Echvi_0830 0.71 +1.2 947,780 - Echvi_0830 0.71 +1.6 947,869 + Echvi_0830 0.77 +0.1 947,885 - Echvi_0830 0.78 +2.2 947,897 + Echvi_0830 0.79 +0.8 947,897 + Echvi_0830 0.79 +1.2 948,039 + Echvi_0830 0.88 +1.9 948,039 + Echvi_0830 0.88 +0.9 948,040 - Echvi_0830 0.88 -0.6 948,065 + Echvi_0830 0.90 +1.0 948,086 - +1.0 948,135 + +0.9 948,135 + +0.6 948,135 + +1.8 948,135 + -0.2 948,147 - -0.6 948,161 + +1.2 948,161 + +0.6 948,161 + +0.8 948,162 - +1.2 948,166 + +1.0 948,172 + -0.8 948,172 + +1.4 948,173 - +1.9 948,173 - +1.4 948,173 - +1.6 948,173 - +0.8 948,174 + -0.0 948,174 + +2.8 948,175 - +1.2 948,175 - +1.2 948,184 + +0.7 948,184 + -0.1 948,184 + +1.8 948,185 - +1.9 948,220 - -0.2 948,241 + +1.8 948,353 + Echvi_0831 0.22 +0.5 948,388 + Echvi_0831 0.29 -1.6 948,394 + Echvi_0831 0.30 -1.7 948,395 - Echvi_0831 0.31 +0.1 948,395 - Echvi_0831 0.31 +0.2 948,423 - Echvi_0831 0.36 -0.9 948,454 + Echvi_0831 0.42 -1.2 948,454 + Echvi_0831 0.42 -0.3 948,455 - Echvi_0831 0.42 -0.5 948,455 - Echvi_0831 0.42 +0.2 948,498 + Echvi_0831 0.51 +1.3 948,536 + Echvi_0831 0.58 -1.2 948,584 + Echvi_0831 0.68 +0.4 948,585 - Echvi_0831 0.68 -2.7 948,589 + +1.2 948,589 + Echvi_0831 0.69 -0.4 948,590 - Echvi_0831 0.69 +0.5 948,590 - Echvi_0831 0.69 -1.3 948,593 + Echvi_0831 0.70 -2.0 948,594 - Echvi_0831 0.70 -2.1 948,617 + Echvi_0831 0.74 +0.8 948,617 + Echvi_0831 0.74 +0.5 948,621 + Echvi_0831 0.75 +0.9 948,621 + Echvi_0831 0.75 -0.2 948,710 + +0.8 948,711 - +1.8 948,746 + +0.2 948,771 + -1.2 948,771 + +0.2 948,775 + +0.7 948,776 - +0.8 948,784 + -1.2 948,785 - -0.4 948,785 - -0.5 948,800 + +0.8 948,807 + +0.8 948,808 - +0.0 948,819 - +0.0 948,951 - Echvi_0832 0.29 +0.1 949,032 + Echvi_0832 0.41 -0.6 949,032 + Echvi_0832 0.41 -0.8 949,033 - Echvi_0832 0.41 +1.0 949,033 - Echvi_0832 0.41 -0.3 949,034 + Echvi_0832 0.41 -0.1 949,034 + Echvi_0832 0.41 -0.5 949,034 + Echvi_0832 0.41 +0.8 949,035 - Echvi_0832 0.42 -2.6 949,035 - Echvi_0832 0.42 +0.0 949,042 - Echvi_0832 0.43 +0.2 949,042 - Echvi_0832 0.43 +0.4 949,042 - Echvi_0832 0.43 +0.3 949,068 - Echvi_0832 0.46 -0.4 949,068 - Echvi_0832 0.46 -0.4 949,076 + Echvi_0832 0.48 -1.1 949,077 - Echvi_0832 0.48 +0.5 949,087 - Echvi_0832 0.49 -0.6 949,108 - Echvi_0832 0.52 +1.2 949,145 - Echvi_0832 0.58 +0.5 949,192 - Echvi_0832 0.65 +0.4
Or see this region's nucleotide sequence