Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0771

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0770 and Echvi_0771 overlap by 29 nucleotidesEchvi_0771 and Echvi_0772 are separated by 141 nucleotides Echvi_0770: Echvi_0770 - dihydrolipoamide dehydrogenase, at 866,750 to 868,234 _0770 Echvi_0771: Echvi_0771 - S23 ribosomal protein., at 868,206 to 868,559 _0771 Echvi_0772: Echvi_0772 - 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component), at 868,701 to 870,275 _0772 Position (kb) 868 869Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 868.180 kb on - strandat 868.180 kb on - strandat 868.187 kb on - strandat 868.187 kb on - strandat 868.194 kb on - strandat 868.294 kb on - strand, within Echvi_0771at 868.298 kb on - strand, within Echvi_0771at 868.298 kb on - strand, within Echvi_0771at 868.303 kb on - strand, within Echvi_0771at 868.303 kb on - strand, within Echvi_0771at 868.321 kb on - strand, within Echvi_0771at 868.363 kb on - strand, within Echvi_0771at 868.413 kb on - strand, within Echvi_0771at 868.453 kb on - strand, within Echvi_0771at 868.494 kb on - strand, within Echvi_0771at 868.494 kb on - strand, within Echvi_0771at 868.494 kb on - strand, within Echvi_0771at 868.497 kb on - strand, within Echvi_0771at 868.497 kb on - strand, within Echvi_0771at 868.497 kb on - strand, within Echvi_0771at 868.497 kb on - strand, within Echvi_0771at 868.499 kb on - strand, within Echvi_0771at 868.499 kb on - strand, within Echvi_0771at 868.513 kb on - strand, within Echvi_0771at 868.519 kb on - strand, within Echvi_0771at 868.563 kb on - strandat 868.609 kb on - strandat 868.645 kb on + strandat 868.662 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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868,180 - -1.1
868,180 - +0.6
868,187 - -0.1
868,187 - -1.5
868,194 - +0.8
868,294 - Echvi_0771 0.25 -1.1
868,298 - Echvi_0771 0.26 +1.7
868,298 - Echvi_0771 0.26 -1.3
868,303 - Echvi_0771 0.27 -0.6
868,303 - Echvi_0771 0.27 -0.7
868,321 - Echvi_0771 0.32 -3.2
868,363 - Echvi_0771 0.44 -0.8
868,413 - Echvi_0771 0.58 -0.9
868,453 - Echvi_0771 0.70 -0.8
868,494 - Echvi_0771 0.81 -1.1
868,494 - Echvi_0771 0.81 -2.1
868,494 - Echvi_0771 0.81 -0.8
868,497 - Echvi_0771 0.82 -1.1
868,497 - Echvi_0771 0.82 -0.6
868,497 - Echvi_0771 0.82 -1.4
868,497 - Echvi_0771 0.82 -2.7
868,499 - Echvi_0771 0.83 +2.2
868,499 - Echvi_0771 0.83 -0.4
868,513 - Echvi_0771 0.87 -0.3
868,519 - Echvi_0771 0.88 +0.7
868,563 - -0.9
868,609 - +1.1
868,645 + -1.6
868,662 - +2.1

Or see this region's nucleotide sequence