Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0744 and Echvi_0745 are separated by 360 nucleotides Echvi_0745 and Echvi_0746 are separated by 2 nucleotides Echvi_0746 and Echvi_0747 are separated by 352 nucleotides
Echvi_0744: Echvi_0744 - glycine dehydrogenase (decarboxylating), at 832,222 to 835,122
_0744
Echvi_0745: Echvi_0745 - Predicted aminopeptidases, at 835,483 to 836,979
_0745
Echvi_0746: Echvi_0746 - hypothetical protein, at 836,982 to 837,125
_0746
Echvi_0747: Echvi_0747 - Superfamily II DNA and RNA helicases, at 837,478 to 838,839
_0747
Position (kb) 835
836
837 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 834.679 kb on - strand, within Echvi_0744 at 834.789 kb on - strand, within Echvi_0744 at 834.795 kb on + strand, within Echvi_0744 at 834.807 kb on - strand, within Echvi_0744 at 834.807 kb on - strand, within Echvi_0744 at 834.840 kb on + strand at 834.840 kb on + strand at 834.841 kb on - strand at 834.863 kb on + strand at 834.880 kb on - strand at 834.880 kb on - strand at 835.139 kb on - strand at 835.142 kb on - strand at 835.143 kb on + strand at 835.143 kb on + strand at 835.144 kb on - strand at 835.144 kb on - strand at 835.154 kb on + strand at 835.155 kb on - strand at 835.155 kb on - strand at 835.293 kb on - strand at 835.294 kb on + strand at 835.295 kb on - strand at 835.295 kb on - strand at 835.378 kb on + strand at 835.429 kb on - strand at 835.439 kb on - strand at 835.439 kb on - strand at 835.442 kb on + strand at 835.443 kb on - strand at 835.443 kb on - strand at 835.448 kb on + strand at 835.448 kb on + strand at 835.465 kb on + strand at 835.466 kb on - strand at 835.476 kb on + strand at 835.476 kb on + strand at 835.476 kb on + strand at 835.477 kb on - strand at 835.478 kb on + strand at 835.495 kb on + strand at 835.496 kb on - strand at 835.521 kb on - strand at 835.607 kb on - strand at 835.607 kb on - strand at 835.616 kb on - strand at 835.725 kb on - strand, within Echvi_0745 at 835.735 kb on + strand, within Echvi_0745 at 835.735 kb on + strand, within Echvi_0745 at 835.736 kb on - strand, within Echvi_0745 at 835.855 kb on + strand, within Echvi_0745 at 836.057 kb on - strand, within Echvi_0745 at 836.176 kb on - strand, within Echvi_0745 at 836.176 kb on - strand, within Echvi_0745 at 836.255 kb on + strand, within Echvi_0745 at 836.255 kb on + strand, within Echvi_0745 at 836.279 kb on - strand, within Echvi_0745 at 836.282 kb on + strand, within Echvi_0745 at 836.310 kb on - strand, within Echvi_0745 at 836.329 kb on + strand, within Echvi_0745 at 836.329 kb on + strand, within Echvi_0745 at 836.329 kb on + strand, within Echvi_0745 at 836.349 kb on + strand, within Echvi_0745 at 836.349 kb on + strand, within Echvi_0745 at 836.349 kb on + strand, within Echvi_0745 at 836.468 kb on + strand, within Echvi_0745 at 836.507 kb on + strand, within Echvi_0745 at 836.508 kb on - strand, within Echvi_0745 at 836.508 kb on - strand, within Echvi_0745 at 836.508 kb on - strand, within Echvi_0745 at 836.508 kb on - strand, within Echvi_0745 at 836.518 kb on + strand, within Echvi_0745 at 836.518 kb on + strand, within Echvi_0745 at 836.518 kb on + strand, within Echvi_0745 at 836.518 kb on + strand, within Echvi_0745 at 836.519 kb on - strand, within Echvi_0745 at 836.521 kb on + strand, within Echvi_0745 at 836.521 kb on + strand, within Echvi_0745 at 836.522 kb on - strand, within Echvi_0745 at 836.522 kb on - strand, within Echvi_0745 at 836.568 kb on + strand, within Echvi_0745 at 836.568 kb on + strand, within Echvi_0745 at 836.596 kb on + strand, within Echvi_0745 at 836.596 kb on + strand, within Echvi_0745 at 836.602 kb on + strand, within Echvi_0745 at 836.626 kb on + strand, within Echvi_0745 at 836.626 kb on + strand, within Echvi_0745 at 836.626 kb on + strand, within Echvi_0745 at 836.626 kb on + strand, within Echvi_0745 at 836.627 kb on - strand, within Echvi_0745 at 836.627 kb on - strand, within Echvi_0745 at 836.627 kb on - strand, within Echvi_0745 at 836.627 kb on - strand, within Echvi_0745 at 836.630 kb on + strand, within Echvi_0745 at 836.631 kb on - strand, within Echvi_0745 at 836.631 kb on - strand, within Echvi_0745 at 836.631 kb on - strand, within Echvi_0745 at 836.632 kb on + strand, within Echvi_0745 at 836.632 kb on + strand, within Echvi_0745 at 836.632 kb on + strand, within Echvi_0745 at 836.633 kb on - strand, within Echvi_0745 at 836.633 kb on - strand, within Echvi_0745 at 836.684 kb on - strand, within Echvi_0745 at 836.689 kb on - strand, within Echvi_0745 at 836.689 kb on - strand, within Echvi_0745 at 836.689 kb on - strand, within Echvi_0745 at 836.689 kb on - strand, within Echvi_0745 at 836.691 kb on + strand, within Echvi_0745 at 836.692 kb on - strand, within Echvi_0745 at 836.692 kb on - strand, within Echvi_0745 at 836.725 kb on + strand, within Echvi_0745 at 836.726 kb on - strand, within Echvi_0745 at 836.755 kb on + strand, within Echvi_0745 at 836.759 kb on - strand, within Echvi_0745 at 836.773 kb on + strand, within Echvi_0745 at 836.773 kb on + strand, within Echvi_0745 at 836.774 kb on - strand, within Echvi_0745 at 836.774 kb on - strand, within Echvi_0745 at 836.801 kb on + strand, within Echvi_0745 at 836.834 kb on - strand at 836.905 kb on + strand at 836.907 kb on + strand at 836.907 kb on + strand at 836.929 kb on - strand at 836.977 kb on + strand at 836.984 kb on - strand at 836.991 kb on + strand at 836.992 kb on - strand at 836.992 kb on - strand at 837.125 kb on + strand at 837.125 kb on + strand at 837.126 kb on - strand at 837.126 kb on - strand at 837.126 kb on - strand at 837.126 kb on - strand at 837.129 kb on + strand at 837.129 kb on + strand at 837.168 kb on - strand at 837.168 kb on - strand at 837.313 kb on + strand at 837.343 kb on + strand at 837.343 kb on + strand at 837.398 kb on - strand at 837.447 kb on + strand at 837.450 kb on + strand at 837.450 kb on + strand at 837.451 kb on - strand at 837.451 kb on - strand at 837.467 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 834,679 - Echvi_0744 0.85 -0.1 834,789 - Echvi_0744 0.88 -1.9 834,795 + Echvi_0744 0.89 +0.2 834,807 - Echvi_0744 0.89 +0.1 834,807 - Echvi_0744 0.89 +0.7 834,840 + +0.7 834,840 + +1.3 834,841 - +0.3 834,863 + -1.7 834,880 - +0.5 834,880 - +1.7 835,139 - -0.3 835,142 - +0.7 835,143 + +2.1 835,143 + +1.5 835,144 - -0.4 835,144 - -1.6 835,154 + +0.4 835,155 - +1.3 835,155 - -1.0 835,293 - +0.3 835,294 + -0.9 835,295 - +1.2 835,295 - +1.5 835,378 + +0.7 835,429 - -0.2 835,439 - -0.9 835,439 - -0.3 835,442 + +0.3 835,443 - -0.4 835,443 - -1.2 835,448 + -0.3 835,448 + +1.8 835,465 + -0.6 835,466 - -0.3 835,476 + +1.5 835,476 + -2.5 835,476 + -0.7 835,477 - -0.1 835,478 + -1.4 835,495 + -0.3 835,496 - -2.1 835,521 - +0.7 835,607 - -0.4 835,607 - -0.7 835,616 - -0.6 835,725 - Echvi_0745 0.16 +0.6 835,735 + Echvi_0745 0.17 -1.7 835,735 + Echvi_0745 0.17 -2.0 835,736 - Echvi_0745 0.17 -0.8 835,855 + Echvi_0745 0.25 -1.6 836,057 - Echvi_0745 0.38 -1.2 836,176 - Echvi_0745 0.46 -1.5 836,176 - Echvi_0745 0.46 +0.3 836,255 + Echvi_0745 0.52 +0.5 836,255 + Echvi_0745 0.52 -0.1 836,279 - Echvi_0745 0.53 -1.0 836,282 + Echvi_0745 0.53 +0.6 836,310 - Echvi_0745 0.55 -0.5 836,329 + Echvi_0745 0.57 -1.1 836,329 + Echvi_0745 0.57 -2.5 836,329 + Echvi_0745 0.57 -2.4 836,349 + Echvi_0745 0.58 -1.1 836,349 + Echvi_0745 0.58 +1.7 836,349 + Echvi_0745 0.58 -3.6 836,468 + Echvi_0745 0.66 +0.5 836,507 + Echvi_0745 0.68 -0.3 836,508 - Echvi_0745 0.68 -1.5 836,508 - Echvi_0745 0.68 -0.6 836,508 - Echvi_0745 0.68 -0.5 836,508 - Echvi_0745 0.68 -2.2 836,518 + Echvi_0745 0.69 -1.0 836,518 + Echvi_0745 0.69 -1.1 836,518 + Echvi_0745 0.69 -1.7 836,518 + Echvi_0745 0.69 -1.9 836,519 - Echvi_0745 0.69 -1.9 836,521 + Echvi_0745 0.69 -0.9 836,521 + Echvi_0745 0.69 -1.4 836,522 - Echvi_0745 0.69 -3.0 836,522 - Echvi_0745 0.69 +0.1 836,568 + Echvi_0745 0.72 -0.9 836,568 + Echvi_0745 0.72 -1.7 836,596 + Echvi_0745 0.74 -0.6 836,596 + Echvi_0745 0.74 -0.4 836,602 + Echvi_0745 0.75 -2.5 836,626 + Echvi_0745 0.76 -1.5 836,626 + Echvi_0745 0.76 -3.1 836,626 + Echvi_0745 0.76 -3.8 836,626 + Echvi_0745 0.76 -1.4 836,627 - Echvi_0745 0.76 -2.4 836,627 - Echvi_0745 0.76 -1.5 836,627 - Echvi_0745 0.76 -0.6 836,627 - Echvi_0745 0.76 -0.7 836,630 + Echvi_0745 0.77 -2.3 836,631 - Echvi_0745 0.77 -0.9 836,631 - Echvi_0745 0.77 -1.7 836,631 - Echvi_0745 0.77 +0.6 836,632 + Echvi_0745 0.77 -1.3 836,632 + Echvi_0745 0.77 -0.6 836,632 + Echvi_0745 0.77 +0.4 836,633 - Echvi_0745 0.77 -1.1 836,633 - Echvi_0745 0.77 +2.0 836,684 - Echvi_0745 0.80 -0.2 836,689 - Echvi_0745 0.81 -0.0 836,689 - Echvi_0745 0.81 -1.6 836,689 - Echvi_0745 0.81 -0.3 836,689 - Echvi_0745 0.81 -0.9 836,691 + Echvi_0745 0.81 -0.9 836,692 - Echvi_0745 0.81 -1.3 836,692 - Echvi_0745 0.81 +0.7 836,725 + Echvi_0745 0.83 -0.1 836,726 - Echvi_0745 0.83 -1.6 836,755 + Echvi_0745 0.85 -0.7 836,759 - Echvi_0745 0.85 +1.7 836,773 + Echvi_0745 0.86 -0.3 836,773 + Echvi_0745 0.86 -3.2 836,774 - Echvi_0745 0.86 -0.7 836,774 - Echvi_0745 0.86 -2.5 836,801 + Echvi_0745 0.88 -2.4 836,834 - +0.0 836,905 + -0.5 836,907 + +0.6 836,907 + -1.2 836,929 - +0.8 836,977 + +0.1 836,984 - +2.1 836,991 + -1.1 836,992 - -0.3 836,992 - -1.9 837,125 + +1.3 837,125 + +0.7 837,126 - -0.1 837,126 - +0.1 837,126 - -0.6 837,126 - -0.9 837,129 + -0.0 837,129 + -0.2 837,168 - +0.7 837,168 - -0.6 837,313 + -0.1 837,343 + +0.1 837,343 + -1.2 837,398 - -0.7 837,447 + +0.8 837,450 + -1.6 837,450 + -0.6 837,451 - +0.1 837,451 - -1.3 837,467 + +1.0
Or see this region's nucleotide sequence