Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0679 and Echvi_0680 are separated by 355 nucleotides Echvi_0680 and Echvi_0681 are separated by 1 nucleotides
Echvi_0679: Echvi_0679 - hypothetical protein, at 763,257 to 764,255
_0679
Echvi_0680: Echvi_0680 - RND family efflux transporter, MFP subunit, at 764,611 to 765,693
_0680
Echvi_0681: Echvi_0681 - Cation/multidrug efflux pump, at 765,695 to 768,757
_0681
Position (kb) 764
765
766 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 763.659 kb on + strand, within Echvi_0679 at 763.660 kb on - strand, within Echvi_0679 at 763.660 kb on - strand, within Echvi_0679 at 763.662 kb on + strand, within Echvi_0679 at 763.662 kb on + strand, within Echvi_0679 at 763.663 kb on - strand, within Echvi_0679 at 763.663 kb on - strand, within Echvi_0679 at 763.663 kb on - strand, within Echvi_0679 at 763.678 kb on + strand, within Echvi_0679 at 763.679 kb on - strand, within Echvi_0679 at 763.694 kb on - strand, within Echvi_0679 at 763.694 kb on - strand, within Echvi_0679 at 763.718 kb on + strand, within Echvi_0679 at 763.738 kb on - strand, within Echvi_0679 at 763.739 kb on + strand, within Echvi_0679 at 763.861 kb on + strand, within Echvi_0679 at 763.861 kb on + strand, within Echvi_0679 at 763.861 kb on + strand, within Echvi_0679 at 763.861 kb on + strand, within Echvi_0679 at 763.861 kb on + strand, within Echvi_0679 at 763.861 kb on + strand, within Echvi_0679 at 763.861 kb on + strand, within Echvi_0679 at 763.862 kb on - strand, within Echvi_0679 at 763.862 kb on - strand, within Echvi_0679 at 763.862 kb on - strand, within Echvi_0679 at 763.862 kb on - strand, within Echvi_0679 at 763.926 kb on + strand, within Echvi_0679 at 763.926 kb on + strand, within Echvi_0679 at 763.926 kb on + strand, within Echvi_0679 at 763.926 kb on + strand, within Echvi_0679 at 763.927 kb on - strand, within Echvi_0679 at 763.950 kb on + strand, within Echvi_0679 at 763.950 kb on + strand, within Echvi_0679 at 763.950 kb on + strand, within Echvi_0679 at 763.951 kb on - strand, within Echvi_0679 at 763.994 kb on + strand, within Echvi_0679 at 764.046 kb on + strand, within Echvi_0679 at 764.047 kb on - strand, within Echvi_0679 at 764.103 kb on + strand, within Echvi_0679 at 764.103 kb on + strand, within Echvi_0679 at 764.231 kb on + strand at 764.231 kb on + strand at 764.305 kb on + strand at 764.329 kb on - strand at 764.352 kb on - strand at 764.388 kb on - strand at 764.392 kb on + strand at 764.416 kb on + strand at 764.568 kb on - strand at 764.590 kb on + strand at 764.591 kb on - strand at 764.630 kb on + strand at 764.640 kb on - strand at 764.676 kb on - strand at 764.687 kb on + strand at 764.688 kb on - strand at 764.931 kb on + strand, within Echvi_0680 at 764.986 kb on + strand, within Echvi_0680 at 764.987 kb on - strand, within Echvi_0680 at 765.049 kb on + strand, within Echvi_0680 at 765.049 kb on + strand, within Echvi_0680 at 765.050 kb on - strand, within Echvi_0680 at 765.050 kb on - strand, within Echvi_0680 at 765.070 kb on + strand, within Echvi_0680 at 765.071 kb on - strand, within Echvi_0680 at 765.071 kb on - strand, within Echvi_0680 at 765.071 kb on - strand, within Echvi_0680 at 765.075 kb on + strand, within Echvi_0680 at 765.076 kb on - strand, within Echvi_0680 at 765.150 kb on - strand, within Echvi_0680 at 765.150 kb on - strand, within Echvi_0680 at 765.210 kb on + strand, within Echvi_0680 at 765.210 kb on + strand, within Echvi_0680 at 765.211 kb on - strand, within Echvi_0680 at 765.211 kb on - strand, within Echvi_0680 at 765.338 kb on - strand, within Echvi_0680 at 765.459 kb on - strand, within Echvi_0680 at 765.459 kb on - strand, within Echvi_0680 at 765.644 kb on + strand at 765.644 kb on + strand at 765.644 kb on + strand at 765.705 kb on + strand at 765.706 kb on - strand at 765.714 kb on + strand at 765.714 kb on + strand at 765.714 kb on + strand at 765.715 kb on - strand at 765.715 kb on - strand at 765.721 kb on + strand at 765.722 kb on - strand at 765.848 kb on + strand at 765.848 kb on + strand at 765.849 kb on - strand at 765.849 kb on - strand at 765.849 kb on - strand at 765.849 kb on - strand at 765.849 kb on - strand at 765.852 kb on + strand at 765.852 kb on + strand at 765.853 kb on - strand at 765.917 kb on - strand at 765.968 kb on - strand at 765.997 kb on + strand at 765.997 kb on + strand at 766.109 kb on - strand, within Echvi_0681 at 766.114 kb on - strand, within Echvi_0681 at 766.171 kb on + strand, within Echvi_0681 at 766.172 kb on - strand, within Echvi_0681 at 766.306 kb on - strand, within Echvi_0681 at 766.312 kb on + strand, within Echvi_0681 at 766.375 kb on - strand, within Echvi_0681 at 766.448 kb on - strand, within Echvi_0681 at 766.573 kb on + strand, within Echvi_0681 at 766.574 kb on - strand, within Echvi_0681 at 766.574 kb on - strand, within Echvi_0681 at 766.579 kb on + strand, within Echvi_0681 at 766.579 kb on + strand, within Echvi_0681 at 766.584 kb on + strand, within Echvi_0681 at 766.584 kb on + strand, within Echvi_0681 at 766.605 kb on + strand, within Echvi_0681 at 766.638 kb on + strand, within Echvi_0681 at 766.639 kb on - strand, within Echvi_0681 at 766.639 kb on - strand, within Echvi_0681 at 766.639 kb on - strand, within Echvi_0681 at 766.664 kb on - strand, within Echvi_0681 at 766.670 kb on + strand, within Echvi_0681 at 766.670 kb on + strand, within Echvi_0681 at 766.671 kb on - strand, within Echvi_0681 at 766.673 kb on - strand, within Echvi_0681
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 763,659 + Echvi_0679 0.40 +0.7 763,660 - Echvi_0679 0.40 -0.4 763,660 - Echvi_0679 0.40 -0.1 763,662 + Echvi_0679 0.41 +0.6 763,662 + Echvi_0679 0.41 +0.4 763,663 - Echvi_0679 0.41 +0.7 763,663 - Echvi_0679 0.41 +0.2 763,663 - Echvi_0679 0.41 -0.0 763,678 + Echvi_0679 0.42 -1.2 763,679 - Echvi_0679 0.42 +0.6 763,694 - Echvi_0679 0.44 -2.8 763,694 - Echvi_0679 0.44 -1.2 763,718 + Echvi_0679 0.46 +0.4 763,738 - Echvi_0679 0.48 -1.1 763,739 + Echvi_0679 0.48 +1.3 763,861 + Echvi_0679 0.60 -1.4 763,861 + Echvi_0679 0.60 +0.7 763,861 + Echvi_0679 0.60 +1.9 763,861 + Echvi_0679 0.60 +0.1 763,861 + Echvi_0679 0.60 +0.2 763,861 + Echvi_0679 0.60 +0.4 763,861 + Echvi_0679 0.60 +1.1 763,862 - Echvi_0679 0.61 -1.2 763,862 - Echvi_0679 0.61 -1.4 763,862 - Echvi_0679 0.61 +2.2 763,862 - Echvi_0679 0.61 +3.9 763,926 + Echvi_0679 0.67 +0.1 763,926 + Echvi_0679 0.67 +1.4 763,926 + Echvi_0679 0.67 +1.7 763,926 + Echvi_0679 0.67 -0.1 763,927 - Echvi_0679 0.67 +1.0 763,950 + Echvi_0679 0.69 -0.6 763,950 + Echvi_0679 0.69 +0.7 763,950 + Echvi_0679 0.69 +2.5 763,951 - Echvi_0679 0.69 -1.1 763,994 + Echvi_0679 0.74 +0.7 764,046 + Echvi_0679 0.79 +1.0 764,047 - Echvi_0679 0.79 -1.4 764,103 + Echvi_0679 0.85 +1.7 764,103 + Echvi_0679 0.85 +2.7 764,231 + +1.9 764,231 + +0.9 764,305 + +2.9 764,329 - +0.3 764,352 - -0.3 764,388 - -1.4 764,392 + +2.8 764,416 + +2.3 764,568 - -1.7 764,590 + +1.5 764,591 - -1.7 764,630 + -1.2 764,640 - +1.4 764,676 - -2.7 764,687 + -0.5 764,688 - +0.1 764,931 + Echvi_0680 0.30 -2.0 764,986 + Echvi_0680 0.35 -2.5 764,987 - Echvi_0680 0.35 -0.8 765,049 + Echvi_0680 0.40 -1.4 765,049 + Echvi_0680 0.40 +0.1 765,050 - Echvi_0680 0.41 -0.5 765,050 - Echvi_0680 0.41 -1.2 765,070 + Echvi_0680 0.42 -0.1 765,071 - Echvi_0680 0.42 -0.1 765,071 - Echvi_0680 0.42 +0.7 765,071 - Echvi_0680 0.42 -0.1 765,075 + Echvi_0680 0.43 +0.7 765,076 - Echvi_0680 0.43 -1.1 765,150 - Echvi_0680 0.50 -1.4 765,150 - Echvi_0680 0.50 -1.1 765,210 + Echvi_0680 0.55 -1.1 765,210 + Echvi_0680 0.55 -0.8 765,211 - Echvi_0680 0.55 -0.6 765,211 - Echvi_0680 0.55 -2.6 765,338 - Echvi_0680 0.67 -1.1 765,459 - Echvi_0680 0.78 -2.7 765,459 - Echvi_0680 0.78 +2.9 765,644 + -3.1 765,644 + -0.3 765,644 + -2.0 765,705 + -1.1 765,706 - -0.2 765,714 + -1.9 765,714 + -1.3 765,714 + -1.3 765,715 - -1.9 765,715 - -0.5 765,721 + +1.2 765,722 - +1.6 765,848 + -1.1 765,848 + +0.2 765,849 - +2.1 765,849 - -1.9 765,849 - -2.9 765,849 - -2.1 765,849 - +0.1 765,852 + +0.4 765,852 + -1.6 765,853 - -2.0 765,917 - -1.0 765,968 - -2.1 765,997 + -1.3 765,997 + +0.1 766,109 - Echvi_0681 0.14 +0.5 766,114 - Echvi_0681 0.14 -0.8 766,171 + Echvi_0681 0.16 -0.6 766,172 - Echvi_0681 0.16 -2.2 766,306 - Echvi_0681 0.20 -0.9 766,312 + Echvi_0681 0.20 -1.7 766,375 - Echvi_0681 0.22 -0.7 766,448 - Echvi_0681 0.25 -2.0 766,573 + Echvi_0681 0.29 -1.3 766,574 - Echvi_0681 0.29 -3.6 766,574 - Echvi_0681 0.29 -0.7 766,579 + Echvi_0681 0.29 -0.4 766,579 + Echvi_0681 0.29 -0.1 766,584 + Echvi_0681 0.29 -0.6 766,584 + Echvi_0681 0.29 -1.2 766,605 + Echvi_0681 0.30 -1.2 766,638 + Echvi_0681 0.31 -2.1 766,639 - Echvi_0681 0.31 -0.1 766,639 - Echvi_0681 0.31 -0.9 766,639 - Echvi_0681 0.31 -0.7 766,664 - Echvi_0681 0.32 -0.3 766,670 + Echvi_0681 0.32 -2.6 766,670 + Echvi_0681 0.32 -1.1 766,671 - Echvi_0681 0.32 -0.4 766,673 - Echvi_0681 0.32 -1.8
Or see this region's nucleotide sequence