Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0675

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0674 and Echvi_0675 are separated by 206 nucleotidesEchvi_0675 and Echvi_0676 are separated by 165 nucleotidesEchvi_0676 and Echvi_0677 overlap by 4 nucleotides Echvi_0674: Echvi_0674 - hypothetical protein, at 756,000 to 756,863 _0674 Echvi_0675: Echvi_0675 - Aspartate/tyrosine/aromatic aminotransferase, at 757,070 to 758,272 _0675 Echvi_0676: Echvi_0676 - Predicted glycosyltransferases, at 758,438 to 759,148 _0676 Echvi_0677: Echvi_0677 - Glycosyltransferases involved in cell wall biogenesis, at 759,145 to 759,939 _0677 Position (kb) 757 758 759Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 756.111 kb on + strand, within Echvi_0674at 756.131 kb on + strand, within Echvi_0674at 756.176 kb on - strand, within Echvi_0674at 756.218 kb on - strand, within Echvi_0674at 756.233 kb on + strand, within Echvi_0674at 756.241 kb on + strand, within Echvi_0674at 756.241 kb on + strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.262 kb on + strand, within Echvi_0674at 756.281 kb on + strand, within Echvi_0674at 756.282 kb on - strand, within Echvi_0674at 756.286 kb on + strand, within Echvi_0674at 756.286 kb on + strand, within Echvi_0674at 756.286 kb on + strand, within Echvi_0674at 756.287 kb on - strand, within Echvi_0674at 756.287 kb on - strand, within Echvi_0674at 756.287 kb on - strand, within Echvi_0674at 756.287 kb on - strand, within Echvi_0674at 756.289 kb on + strand, within Echvi_0674at 756.289 kb on + strand, within Echvi_0674at 756.289 kb on + strand, within Echvi_0674at 756.289 kb on + strand, within Echvi_0674at 756.289 kb on + strand, within Echvi_0674at 756.290 kb on - strand, within Echvi_0674at 756.322 kb on + strand, within Echvi_0674at 756.322 kb on + strand, within Echvi_0674at 756.325 kb on + strand, within Echvi_0674at 756.325 kb on + strand, within Echvi_0674at 756.325 kb on + strand, within Echvi_0674at 756.326 kb on - strand, within Echvi_0674at 756.326 kb on - strand, within Echvi_0674at 756.326 kb on - strand, within Echvi_0674at 756.326 kb on - strand, within Echvi_0674at 756.339 kb on + strand, within Echvi_0674at 756.340 kb on - strand, within Echvi_0674at 756.394 kb on + strand, within Echvi_0674at 756.395 kb on - strand, within Echvi_0674at 756.395 kb on - strand, within Echvi_0674at 756.428 kb on + strand, within Echvi_0674at 756.429 kb on - strand, within Echvi_0674at 756.429 kb on - strand, within Echvi_0674at 756.439 kb on + strand, within Echvi_0674at 756.439 kb on + strand, within Echvi_0674at 756.440 kb on - strand, within Echvi_0674at 756.440 kb on - strand, within Echvi_0674at 756.440 kb on - strand, within Echvi_0674at 756.458 kb on - strand, within Echvi_0674at 756.517 kb on + strand, within Echvi_0674at 756.532 kb on + strand, within Echvi_0674at 756.532 kb on + strand, within Echvi_0674at 756.532 kb on + strand, within Echvi_0674at 756.532 kb on + strand, within Echvi_0674at 756.533 kb on - strand, within Echvi_0674at 756.533 kb on - strand, within Echvi_0674at 756.533 kb on - strand, within Echvi_0674at 756.551 kb on + strand, within Echvi_0674at 756.560 kb on + strand, within Echvi_0674at 756.561 kb on - strand, within Echvi_0674at 756.637 kb on + strand, within Echvi_0674at 756.637 kb on + strand, within Echvi_0674at 756.637 kb on + strand, within Echvi_0674at 756.637 kb on + strand, within Echvi_0674at 756.637 kb on + strand, within Echvi_0674at 756.638 kb on - strand, within Echvi_0674at 756.638 kb on - strand, within Echvi_0674at 756.638 kb on - strand, within Echvi_0674at 756.638 kb on - strand, within Echvi_0674at 756.641 kb on + strand, within Echvi_0674at 756.641 kb on + strand, within Echvi_0674at 756.641 kb on + strand, within Echvi_0674at 756.642 kb on - strand, within Echvi_0674at 756.642 kb on - strand, within Echvi_0674at 756.722 kb on + strand, within Echvi_0674at 756.723 kb on - strand, within Echvi_0674at 756.826 kb on - strandat 756.834 kb on + strandat 756.835 kb on - strandat 756.844 kb on + strandat 756.864 kb on - strandat 756.871 kb on - strandat 756.901 kb on - strandat 756.914 kb on + strandat 756.922 kb on - strandat 756.925 kb on + strandat 756.926 kb on - strandat 756.953 kb on + strandat 756.953 kb on + strandat 756.954 kb on - strandat 756.954 kb on - strandat 756.954 kb on - strandat 756.995 kb on - strandat 757.032 kb on - strandat 757.050 kb on + strandat 757.051 kb on - strandat 757.062 kb on + strandat 758.266 kb on + strandat 758.266 kb on + strandat 758.267 kb on - strandat 758.267 kb on - strandat 758.267 kb on - strandat 758.267 kb on - strandat 758.299 kb on + strandat 758.304 kb on - strandat 758.376 kb on + strandat 758.454 kb on + strandat 758.455 kb on - strandat 758.455 kb on - strandat 758.458 kb on + strandat 758.459 kb on - strandat 758.459 kb on - strandat 758.459 kb on - strandat 758.518 kb on + strand, within Echvi_0676at 758.607 kb on - strand, within Echvi_0676at 758.719 kb on - strand, within Echvi_0676at 758.730 kb on + strand, within Echvi_0676at 758.730 kb on + strand, within Echvi_0676at 758.800 kb on - strand, within Echvi_0676at 758.800 kb on - strand, within Echvi_0676at 758.814 kb on + strand, within Echvi_0676at 758.819 kb on + strand, within Echvi_0676at 758.819 kb on + strand, within Echvi_0676at 758.848 kb on + strand, within Echvi_0676at 758.939 kb on + strand, within Echvi_0676at 758.939 kb on + strand, within Echvi_0676at 758.947 kb on + strand, within Echvi_0676at 758.947 kb on + strand, within Echvi_0676at 758.947 kb on + strand, within Echvi_0676at 758.948 kb on - strand, within Echvi_0676at 758.975 kb on + strand, within Echvi_0676at 758.986 kb on + strand, within Echvi_0676at 758.986 kb on + strand, within Echvi_0676at 759.090 kb on - strandat 759.107 kb on + strandat 759.110 kb on + strandat 759.151 kb on + strandat 759.151 kb on + strandat 759.152 kb on - strandat 759.166 kb on + strandat 759.166 kb on + strandat 759.178 kb on - strandat 759.178 kb on - strandat 759.179 kb on + strandat 759.180 kb on - strandat 759.208 kb on + strandat 759.259 kb on - strand, within Echvi_0677

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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756,111 + Echvi_0674 0.13 +2.3
756,131 + Echvi_0674 0.15 +1.9
756,176 - Echvi_0674 0.20 +2.4
756,218 - Echvi_0674 0.25 +2.2
756,233 + Echvi_0674 0.27 +2.4
756,241 + Echvi_0674 0.28 +2.2
756,241 + Echvi_0674 0.28 +2.0
756,242 - Echvi_0674 0.28 +1.6
756,242 - Echvi_0674 0.28 +1.7
756,242 - Echvi_0674 0.28 +2.2
756,242 - Echvi_0674 0.28 +2.0
756,242 - Echvi_0674 0.28 +1.3
756,242 - Echvi_0674 0.28 +1.7
756,262 + Echvi_0674 0.30 +2.3
756,281 + Echvi_0674 0.33 +2.6
756,282 - Echvi_0674 0.33 +2.4
756,286 + Echvi_0674 0.33 +1.9
756,286 + Echvi_0674 0.33 +1.9
756,286 + Echvi_0674 0.33 +2.3
756,287 - Echvi_0674 0.33 +2.0
756,287 - Echvi_0674 0.33 +2.7
756,287 - Echvi_0674 0.33 +2.1
756,287 - Echvi_0674 0.33 +1.7
756,289 + Echvi_0674 0.33 +2.1
756,289 + Echvi_0674 0.33 +1.9
756,289 + Echvi_0674 0.33 +2.4
756,289 + Echvi_0674 0.33 +3.1
756,289 + Echvi_0674 0.33 +2.2
756,290 - Echvi_0674 0.34 +2.1
756,322 + Echvi_0674 0.37 +2.4
756,322 + Echvi_0674 0.37 -0.8
756,325 + Echvi_0674 0.38 +2.3
756,325 + Echvi_0674 0.38 +2.2
756,325 + Echvi_0674 0.38 +3.0
756,326 - Echvi_0674 0.38 +1.7
756,326 - Echvi_0674 0.38 +2.1
756,326 - Echvi_0674 0.38 +0.8
756,326 - Echvi_0674 0.38 +2.7
756,339 + Echvi_0674 0.39 -1.6
756,340 - Echvi_0674 0.39 +2.3
756,394 + Echvi_0674 0.46 +0.6
756,395 - Echvi_0674 0.46 +2.1
756,395 - Echvi_0674 0.46 +2.2
756,428 + Echvi_0674 0.50 +2.3
756,429 - Echvi_0674 0.50 +1.9
756,429 - Echvi_0674 0.50 +0.6
756,439 + Echvi_0674 0.51 +2.3
756,439 + Echvi_0674 0.51 +2.3
756,440 - Echvi_0674 0.51 +1.5
756,440 - Echvi_0674 0.51 +1.9
756,440 - Echvi_0674 0.51 +2.1
756,458 - Echvi_0674 0.53 +2.5
756,517 + Echvi_0674 0.60 +3.1
756,532 + Echvi_0674 0.62 +2.0
756,532 + Echvi_0674 0.62 +1.9
756,532 + Echvi_0674 0.62 +2.2
756,532 + Echvi_0674 0.62 +2.6
756,533 - Echvi_0674 0.62 +2.6
756,533 - Echvi_0674 0.62 +2.4
756,533 - Echvi_0674 0.62 +2.0
756,551 + Echvi_0674 0.64 +1.4
756,560 + Echvi_0674 0.65 +2.6
756,561 - Echvi_0674 0.65 +3.6
756,637 + Echvi_0674 0.74 +2.2
756,637 + Echvi_0674 0.74 +2.4
756,637 + Echvi_0674 0.74 +2.3
756,637 + Echvi_0674 0.74 +2.5
756,637 + Echvi_0674 0.74 +3.4
756,638 - Echvi_0674 0.74 +0.3
756,638 - Echvi_0674 0.74 +2.5
756,638 - Echvi_0674 0.74 +2.6
756,638 - Echvi_0674 0.74 +2.3
756,641 + Echvi_0674 0.74 +1.5
756,641 + Echvi_0674 0.74 +2.7
756,641 + Echvi_0674 0.74 +2.2
756,642 - Echvi_0674 0.74 +2.0
756,642 - Echvi_0674 0.74 +1.3
756,722 + Echvi_0674 0.84 +2.2
756,723 - Echvi_0674 0.84 +2.0
756,826 - +2.3
756,834 + -0.0
756,835 - +0.4
756,844 + +2.4
756,864 - +0.1
756,871 - -0.3
756,901 - -1.1
756,914 + -1.4
756,922 - +2.1
756,925 + -2.0
756,926 - -0.2
756,953 + -1.0
756,953 + -2.4
756,954 - -1.7
756,954 - -1.7
756,954 - -4.1
756,995 - -0.8
757,032 - -2.7
757,050 + -1.3
757,051 - -1.1
757,062 + -1.3
758,266 + -0.2
758,266 + -1.7
758,267 - -1.0
758,267 - -2.9
758,267 - +0.1
758,267 - -2.1
758,299 + +0.2
758,304 - -1.9
758,376 + +0.4
758,454 + -1.3
758,455 - -2.9
758,455 - -3.7
758,458 + -2.9
758,459 - -1.9
758,459 - -1.9
758,459 - -1.3
758,518 + Echvi_0676 0.11 -0.9
758,607 - Echvi_0676 0.24 -1.8
758,719 - Echvi_0676 0.40 -2.2
758,730 + Echvi_0676 0.41 -5.5
758,730 + Echvi_0676 0.41 -1.4
758,800 - Echvi_0676 0.51 -3.1
758,800 - Echvi_0676 0.51 -4.2
758,814 + Echvi_0676 0.53 -0.6
758,819 + Echvi_0676 0.54 -2.9
758,819 + Echvi_0676 0.54 -3.8
758,848 + Echvi_0676 0.58 -2.4
758,939 + Echvi_0676 0.70 -3.3
758,939 + Echvi_0676 0.70 -2.2
758,947 + Echvi_0676 0.72 -2.9
758,947 + Echvi_0676 0.72 -0.8
758,947 + Echvi_0676 0.72 -2.8
758,948 - Echvi_0676 0.72 -1.8
758,975 + Echvi_0676 0.76 -3.4
758,986 + Echvi_0676 0.77 -3.6
758,986 + Echvi_0676 0.77 -0.6
759,090 - -1.5
759,107 + -0.7
759,110 + -3.8
759,151 + -0.9
759,151 + +0.2
759,152 - +1.5
759,166 + -0.4
759,166 + -0.9
759,178 - +0.0
759,178 - +0.2
759,179 + -0.3
759,180 - +1.7
759,208 + +0.4
759,259 - Echvi_0677 0.14 +0.7

Or see this region's nucleotide sequence