Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0673

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0671 and Echvi_0672 are separated by 50 nucleotidesEchvi_0672 and Echvi_0673 are separated by 90 nucleotidesEchvi_0673 and Echvi_0674 are separated by 110 nucleotides Echvi_0671: Echvi_0671 - hypothetical protein, at 754,232 to 754,633 _0671 Echvi_0672: Echvi_0672 - lipoate-protein ligase B, at 754,684 to 755,442 _0672 Echvi_0673: Echvi_0673 - Predicted endonuclease distantly related to archaeal Holliday junction resolvase, at 755,533 to 755,889 _0673 Echvi_0674: Echvi_0674 - hypothetical protein, at 756,000 to 756,863 _0674 Position (kb) 755 756Strain fitness (log2 ratio) -2 -1 0 1 2 3at 754.540 kb on + strand, within Echvi_0671at 754.540 kb on + strand, within Echvi_0671at 754.542 kb on + strand, within Echvi_0671at 754.542 kb on + strand, within Echvi_0671at 754.542 kb on + strand, within Echvi_0671at 754.543 kb on - strand, within Echvi_0671at 754.543 kb on - strand, within Echvi_0671at 754.543 kb on - strand, within Echvi_0671at 754.561 kb on + strand, within Echvi_0671at 754.562 kb on - strand, within Echvi_0671at 754.562 kb on - strand, within Echvi_0671at 754.562 kb on - strand, within Echvi_0671at 754.562 kb on - strand, within Echvi_0671at 754.619 kb on + strandat 754.636 kb on + strandat 754.636 kb on + strandat 754.637 kb on - strandat 754.637 kb on - strandat 754.640 kb on - strandat 754.650 kb on + strandat 754.651 kb on - strandat 754.667 kb on - strandat 755.409 kb on - strandat 755.425 kb on + strandat 755.529 kb on + strandat 755.547 kb on + strandat 755.547 kb on + strandat 755.547 kb on + strandat 755.548 kb on - strandat 755.604 kb on + strand, within Echvi_0673at 755.604 kb on + strand, within Echvi_0673at 755.605 kb on - strand, within Echvi_0673at 755.624 kb on - strand, within Echvi_0673at 755.624 kb on - strand, within Echvi_0673at 755.624 kb on - strand, within Echvi_0673at 755.631 kb on + strand, within Echvi_0673at 755.631 kb on + strand, within Echvi_0673at 755.719 kb on + strand, within Echvi_0673at 755.720 kb on - strand, within Echvi_0673at 755.740 kb on + strand, within Echvi_0673at 755.742 kb on + strand, within Echvi_0673at 755.779 kb on + strand, within Echvi_0673at 755.779 kb on + strand, within Echvi_0673at 755.779 kb on + strand, within Echvi_0673at 755.780 kb on - strand, within Echvi_0673at 755.780 kb on - strand, within Echvi_0673at 755.780 kb on - strand, within Echvi_0673at 755.780 kb on - strand, within Echvi_0673at 755.781 kb on + strand, within Echvi_0673at 755.782 kb on - strand, within Echvi_0673at 755.802 kb on + strand, within Echvi_0673at 755.803 kb on - strand, within Echvi_0673at 755.834 kb on - strand, within Echvi_0673at 755.862 kb on + strandat 755.863 kb on - strandat 755.920 kb on + strandat 756.053 kb on + strandat 756.053 kb on + strandat 756.053 kb on + strandat 756.053 kb on + strandat 756.053 kb on + strandat 756.054 kb on - strandat 756.054 kb on - strandat 756.054 kb on - strandat 756.055 kb on + strandat 756.055 kb on + strandat 756.055 kb on + strandat 756.055 kb on + strandat 756.055 kb on + strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.111 kb on + strand, within Echvi_0674at 756.131 kb on + strand, within Echvi_0674at 756.176 kb on - strand, within Echvi_0674at 756.218 kb on - strand, within Echvi_0674at 756.233 kb on + strand, within Echvi_0674at 756.241 kb on + strand, within Echvi_0674at 756.241 kb on + strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.262 kb on + strand, within Echvi_0674at 756.281 kb on + strand, within Echvi_0674at 756.282 kb on - strand, within Echvi_0674at 756.286 kb on + strand, within Echvi_0674at 756.286 kb on + strand, within Echvi_0674at 756.286 kb on + strand, within Echvi_0674at 756.287 kb on - strand, within Echvi_0674at 756.287 kb on - strand, within Echvi_0674at 756.287 kb on - strand, within Echvi_0674at 756.287 kb on - strand, within Echvi_0674at 756.289 kb on + strand, within Echvi_0674at 756.289 kb on + strand, within Echvi_0674at 756.289 kb on + strand, within Echvi_0674at 756.289 kb on + strand, within Echvi_0674at 756.289 kb on + strand, within Echvi_0674at 756.290 kb on - strand, within Echvi_0674at 756.322 kb on + strand, within Echvi_0674at 756.322 kb on + strand, within Echvi_0674at 756.325 kb on + strand, within Echvi_0674at 756.325 kb on + strand, within Echvi_0674at 756.325 kb on + strand, within Echvi_0674at 756.326 kb on - strand, within Echvi_0674at 756.326 kb on - strand, within Echvi_0674at 756.326 kb on - strand, within Echvi_0674at 756.326 kb on - strand, within Echvi_0674at 756.339 kb on + strand, within Echvi_0674at 756.340 kb on - strand, within Echvi_0674at 756.394 kb on + strand, within Echvi_0674at 756.395 kb on - strand, within Echvi_0674at 756.395 kb on - strand, within Echvi_0674at 756.428 kb on + strand, within Echvi_0674at 756.429 kb on - strand, within Echvi_0674at 756.429 kb on - strand, within Echvi_0674at 756.439 kb on + strand, within Echvi_0674at 756.439 kb on + strand, within Echvi_0674at 756.440 kb on - strand, within Echvi_0674at 756.440 kb on - strand, within Echvi_0674at 756.440 kb on - strand, within Echvi_0674at 756.458 kb on - strand, within Echvi_0674at 756.517 kb on + strand, within Echvi_0674at 756.532 kb on + strand, within Echvi_0674at 756.532 kb on + strand, within Echvi_0674at 756.532 kb on + strand, within Echvi_0674at 756.532 kb on + strand, within Echvi_0674at 756.533 kb on - strand, within Echvi_0674at 756.533 kb on - strand, within Echvi_0674at 756.533 kb on - strand, within Echvi_0674at 756.551 kb on + strand, within Echvi_0674at 756.560 kb on + strand, within Echvi_0674at 756.561 kb on - strand, within Echvi_0674at 756.637 kb on + strand, within Echvi_0674at 756.637 kb on + strand, within Echvi_0674at 756.637 kb on + strand, within Echvi_0674at 756.637 kb on + strand, within Echvi_0674at 756.637 kb on + strand, within Echvi_0674at 756.638 kb on - strand, within Echvi_0674at 756.638 kb on - strand, within Echvi_0674at 756.638 kb on - strand, within Echvi_0674at 756.638 kb on - strand, within Echvi_0674at 756.641 kb on + strand, within Echvi_0674at 756.641 kb on + strand, within Echvi_0674at 756.641 kb on + strand, within Echvi_0674at 756.642 kb on - strand, within Echvi_0674at 756.642 kb on - strand, within Echvi_0674at 756.722 kb on + strand, within Echvi_0674at 756.723 kb on - strand, within Echvi_0674at 756.826 kb on - strandat 756.834 kb on + strandat 756.835 kb on - strandat 756.844 kb on + strandat 756.864 kb on - strandat 756.871 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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754,540 + Echvi_0671 0.77 +0.4
754,540 + Echvi_0671 0.77 +1.5
754,542 + Echvi_0671 0.77 -1.7
754,542 + Echvi_0671 0.77 -1.4
754,542 + Echvi_0671 0.77 +0.1
754,543 - Echvi_0671 0.77 +0.1
754,543 - Echvi_0671 0.77 -0.3
754,543 - Echvi_0671 0.77 -0.8
754,561 + Echvi_0671 0.82 +0.6
754,562 - Echvi_0671 0.82 +1.1
754,562 - Echvi_0671 0.82 -0.7
754,562 - Echvi_0671 0.82 +0.3
754,562 - Echvi_0671 0.82 +3.7
754,619 + -0.8
754,636 + -0.0
754,636 + +0.7
754,637 - +0.9
754,637 - -0.4
754,640 - +0.1
754,650 + -0.7
754,651 - +0.5
754,667 - -1.4
755,409 - +0.6
755,425 + -1.7
755,529 + -0.6
755,547 + -0.1
755,547 + +0.5
755,547 + -0.3
755,548 - +0.5
755,604 + Echvi_0673 0.20 -1.4
755,604 + Echvi_0673 0.20 +2.2
755,605 - Echvi_0673 0.20 +1.0
755,624 - Echvi_0673 0.25 -2.6
755,624 - Echvi_0673 0.25 -2.7
755,624 - Echvi_0673 0.25 +0.0
755,631 + Echvi_0673 0.27 +0.4
755,631 + Echvi_0673 0.27 +0.1
755,719 + Echvi_0673 0.52 -0.4
755,720 - Echvi_0673 0.52 -1.3
755,740 + Echvi_0673 0.58 +0.6
755,742 + Echvi_0673 0.59 -0.5
755,779 + Echvi_0673 0.69 -0.1
755,779 + Echvi_0673 0.69 -0.2
755,779 + Echvi_0673 0.69 -2.0
755,780 - Echvi_0673 0.69 -1.3
755,780 - Echvi_0673 0.69 -0.5
755,780 - Echvi_0673 0.69 +0.5
755,780 - Echvi_0673 0.69 +0.1
755,781 + Echvi_0673 0.69 -0.9
755,782 - Echvi_0673 0.70 +0.1
755,802 + Echvi_0673 0.75 +0.7
755,803 - Echvi_0673 0.76 +1.3
755,834 - Echvi_0673 0.84 +1.9
755,862 + +0.5
755,863 - -0.1
755,920 + -0.1
756,053 + +2.8
756,053 + +1.8
756,053 + +2.0
756,053 + +2.2
756,053 + +2.2
756,054 - +2.0
756,054 - +2.6
756,054 - +2.5
756,055 + +3.0
756,055 + +1.9
756,055 + +2.6
756,055 + +2.0
756,055 + +2.1
756,056 - +2.0
756,056 - +1.2
756,056 - +2.4
756,056 - +0.2
756,056 - +2.5
756,056 - +2.2
756,056 - +2.0
756,056 - +1.8
756,056 - +2.1
756,056 - +2.5
756,111 + Echvi_0674 0.13 +2.3
756,131 + Echvi_0674 0.15 +1.9
756,176 - Echvi_0674 0.20 +2.4
756,218 - Echvi_0674 0.25 +2.2
756,233 + Echvi_0674 0.27 +2.4
756,241 + Echvi_0674 0.28 +2.2
756,241 + Echvi_0674 0.28 +2.0
756,242 - Echvi_0674 0.28 +1.6
756,242 - Echvi_0674 0.28 +1.7
756,242 - Echvi_0674 0.28 +2.2
756,242 - Echvi_0674 0.28 +2.0
756,242 - Echvi_0674 0.28 +1.3
756,242 - Echvi_0674 0.28 +1.7
756,262 + Echvi_0674 0.30 +2.3
756,281 + Echvi_0674 0.33 +2.6
756,282 - Echvi_0674 0.33 +2.4
756,286 + Echvi_0674 0.33 +1.9
756,286 + Echvi_0674 0.33 +1.9
756,286 + Echvi_0674 0.33 +2.3
756,287 - Echvi_0674 0.33 +2.0
756,287 - Echvi_0674 0.33 +2.7
756,287 - Echvi_0674 0.33 +2.1
756,287 - Echvi_0674 0.33 +1.7
756,289 + Echvi_0674 0.33 +2.1
756,289 + Echvi_0674 0.33 +1.9
756,289 + Echvi_0674 0.33 +2.4
756,289 + Echvi_0674 0.33 +3.1
756,289 + Echvi_0674 0.33 +2.2
756,290 - Echvi_0674 0.34 +2.1
756,322 + Echvi_0674 0.37 +2.4
756,322 + Echvi_0674 0.37 -0.8
756,325 + Echvi_0674 0.38 +2.3
756,325 + Echvi_0674 0.38 +2.2
756,325 + Echvi_0674 0.38 +3.0
756,326 - Echvi_0674 0.38 +1.7
756,326 - Echvi_0674 0.38 +2.1
756,326 - Echvi_0674 0.38 +0.8
756,326 - Echvi_0674 0.38 +2.7
756,339 + Echvi_0674 0.39 -1.6
756,340 - Echvi_0674 0.39 +2.3
756,394 + Echvi_0674 0.46 +0.6
756,395 - Echvi_0674 0.46 +2.1
756,395 - Echvi_0674 0.46 +2.2
756,428 + Echvi_0674 0.50 +2.3
756,429 - Echvi_0674 0.50 +1.9
756,429 - Echvi_0674 0.50 +0.6
756,439 + Echvi_0674 0.51 +2.3
756,439 + Echvi_0674 0.51 +2.3
756,440 - Echvi_0674 0.51 +1.5
756,440 - Echvi_0674 0.51 +1.9
756,440 - Echvi_0674 0.51 +2.1
756,458 - Echvi_0674 0.53 +2.5
756,517 + Echvi_0674 0.60 +3.1
756,532 + Echvi_0674 0.62 +2.0
756,532 + Echvi_0674 0.62 +1.9
756,532 + Echvi_0674 0.62 +2.2
756,532 + Echvi_0674 0.62 +2.6
756,533 - Echvi_0674 0.62 +2.6
756,533 - Echvi_0674 0.62 +2.4
756,533 - Echvi_0674 0.62 +2.0
756,551 + Echvi_0674 0.64 +1.4
756,560 + Echvi_0674 0.65 +2.6
756,561 - Echvi_0674 0.65 +3.6
756,637 + Echvi_0674 0.74 +2.2
756,637 + Echvi_0674 0.74 +2.4
756,637 + Echvi_0674 0.74 +2.3
756,637 + Echvi_0674 0.74 +2.5
756,637 + Echvi_0674 0.74 +3.4
756,638 - Echvi_0674 0.74 +0.3
756,638 - Echvi_0674 0.74 +2.5
756,638 - Echvi_0674 0.74 +2.6
756,638 - Echvi_0674 0.74 +2.3
756,641 + Echvi_0674 0.74 +1.5
756,641 + Echvi_0674 0.74 +2.7
756,641 + Echvi_0674 0.74 +2.2
756,642 - Echvi_0674 0.74 +2.0
756,642 - Echvi_0674 0.74 +1.3
756,722 + Echvi_0674 0.84 +2.2
756,723 - Echvi_0674 0.84 +2.0
756,826 - +2.3
756,834 + -0.0
756,835 - +0.4
756,844 + +2.4
756,864 - +0.1
756,871 - -0.3

Or see this region's nucleotide sequence