Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0670

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0669 and Echvi_0670 are separated by 206 nucleotidesEchvi_0670 and Echvi_0671 are separated by 8 nucleotidesEchvi_0671 and Echvi_0672 are separated by 50 nucleotides Echvi_0669: Echvi_0669 - ribonuclease R, at 751,117 to 753,291 _0669 Echvi_0670: Echvi_0670 - DNA polymerase elongation subunit (family B), at 753,498 to 754,223 _0670 Echvi_0671: Echvi_0671 - hypothetical protein, at 754,232 to 754,633 _0671 Echvi_0672: Echvi_0672 - lipoate-protein ligase B, at 754,684 to 755,442 _0672 Position (kb) 753 754 755Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 753.167 kb on - strandat 753.244 kb on - strandat 753.333 kb on - strandat 753.380 kb on - strandat 753.400 kb on - strandat 753.416 kb on + strandat 753.416 kb on + strandat 753.440 kb on + strandat 753.457 kb on + strandat 753.457 kb on + strandat 753.458 kb on - strandat 753.469 kb on + strandat 753.470 kb on - strandat 753.477 kb on + strandat 753.478 kb on - strandat 753.499 kb on + strandat 753.499 kb on + strandat 753.499 kb on + strandat 753.500 kb on - strandat 753.530 kb on + strandat 753.560 kb on - strandat 753.560 kb on - strandat 753.580 kb on - strand, within Echvi_0670at 753.587 kb on + strand, within Echvi_0670at 753.595 kb on + strand, within Echvi_0670at 753.596 kb on - strand, within Echvi_0670at 753.596 kb on - strand, within Echvi_0670at 753.596 kb on - strand, within Echvi_0670at 753.596 kb on - strand, within Echvi_0670at 753.599 kb on + strand, within Echvi_0670at 753.600 kb on - strand, within Echvi_0670at 753.657 kb on + strand, within Echvi_0670at 753.657 kb on + strand, within Echvi_0670at 753.657 kb on + strand, within Echvi_0670at 753.657 kb on + strand, within Echvi_0670at 753.657 kb on + strand, within Echvi_0670at 753.657 kb on + strand, within Echvi_0670at 753.658 kb on - strand, within Echvi_0670at 753.658 kb on - strand, within Echvi_0670at 753.658 kb on - strand, within Echvi_0670at 753.658 kb on - strand, within Echvi_0670at 753.658 kb on - strand, within Echvi_0670at 753.659 kb on + strand, within Echvi_0670at 753.659 kb on + strand, within Echvi_0670at 753.715 kb on + strand, within Echvi_0670at 753.722 kb on + strand, within Echvi_0670at 753.722 kb on + strand, within Echvi_0670at 753.722 kb on + strand, within Echvi_0670at 753.723 kb on - strand, within Echvi_0670at 753.723 kb on - strand, within Echvi_0670at 753.723 kb on - strand, within Echvi_0670at 753.723 kb on - strand, within Echvi_0670at 753.723 kb on - strand, within Echvi_0670at 753.724 kb on + strand, within Echvi_0670at 753.814 kb on - strand, within Echvi_0670at 753.818 kb on + strand, within Echvi_0670at 753.819 kb on - strand, within Echvi_0670at 753.900 kb on + strand, within Echvi_0670at 753.991 kb on + strand, within Echvi_0670at 754.039 kb on + strand, within Echvi_0670at 754.039 kb on + strand, within Echvi_0670at 754.039 kb on + strand, within Echvi_0670at 754.039 kb on + strand, within Echvi_0670at 754.040 kb on - strand, within Echvi_0670at 754.040 kb on - strand, within Echvi_0670at 754.040 kb on - strand, within Echvi_0670at 754.040 kb on - strand, within Echvi_0670at 754.040 kb on - strand, within Echvi_0670at 754.041 kb on + strand, within Echvi_0670at 754.042 kb on - strand, within Echvi_0670at 754.042 kb on - strand, within Echvi_0670at 754.043 kb on + strand, within Echvi_0670at 754.043 kb on + strand, within Echvi_0670at 754.060 kb on + strand, within Echvi_0670at 754.062 kb on + strand, within Echvi_0670at 754.128 kb on + strand, within Echvi_0670at 754.224 kb on - strandat 754.328 kb on + strand, within Echvi_0671at 754.328 kb on + strand, within Echvi_0671at 754.329 kb on - strand, within Echvi_0671at 754.341 kb on - strand, within Echvi_0671at 754.341 kb on - strand, within Echvi_0671at 754.342 kb on + strand, within Echvi_0671at 754.342 kb on + strand, within Echvi_0671at 754.342 kb on + strand, within Echvi_0671at 754.344 kb on + strand, within Echvi_0671at 754.344 kb on + strand, within Echvi_0671at 754.345 kb on - strand, within Echvi_0671at 754.345 kb on - strand, within Echvi_0671at 754.345 kb on - strand, within Echvi_0671at 754.347 kb on + strand, within Echvi_0671at 754.347 kb on + strand, within Echvi_0671at 754.348 kb on - strand, within Echvi_0671at 754.348 kb on - strand, within Echvi_0671at 754.438 kb on + strand, within Echvi_0671at 754.438 kb on + strand, within Echvi_0671at 754.439 kb on - strand, within Echvi_0671at 754.540 kb on + strand, within Echvi_0671at 754.540 kb on + strand, within Echvi_0671at 754.542 kb on + strand, within Echvi_0671at 754.542 kb on + strand, within Echvi_0671at 754.542 kb on + strand, within Echvi_0671at 754.543 kb on - strand, within Echvi_0671at 754.543 kb on - strand, within Echvi_0671at 754.543 kb on - strand, within Echvi_0671at 754.561 kb on + strand, within Echvi_0671at 754.562 kb on - strand, within Echvi_0671at 754.562 kb on - strand, within Echvi_0671at 754.562 kb on - strand, within Echvi_0671at 754.562 kb on - strand, within Echvi_0671at 754.619 kb on + strandat 754.636 kb on + strandat 754.636 kb on + strandat 754.637 kb on - strandat 754.637 kb on - strandat 754.640 kb on - strandat 754.650 kb on + strandat 754.651 kb on - strandat 754.667 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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753,167 - -1.3
753,244 - -3.2
753,333 - -1.1
753,380 - -2.4
753,400 - +0.7
753,416 + +0.5
753,416 + +0.2
753,440 + +0.7
753,457 + +0.4
753,457 + -0.6
753,458 - -1.3
753,469 + -1.1
753,470 - -2.7
753,477 + -1.6
753,478 - +0.6
753,499 + +0.6
753,499 + -0.0
753,499 + -0.1
753,500 - +0.1
753,530 + -0.4
753,560 - -0.2
753,560 - -2.2
753,580 - Echvi_0670 0.11 -1.7
753,587 + Echvi_0670 0.12 +0.4
753,595 + Echvi_0670 0.13 -0.3
753,596 - Echvi_0670 0.13 -0.6
753,596 - Echvi_0670 0.13 -0.7
753,596 - Echvi_0670 0.13 -2.1
753,596 - Echvi_0670 0.13 -0.1
753,599 + Echvi_0670 0.14 -0.8
753,600 - Echvi_0670 0.14 -0.6
753,657 + Echvi_0670 0.22 -0.4
753,657 + Echvi_0670 0.22 +1.7
753,657 + Echvi_0670 0.22 -0.9
753,657 + Echvi_0670 0.22 +0.6
753,657 + Echvi_0670 0.22 -0.4
753,657 + Echvi_0670 0.22 +0.3
753,658 - Echvi_0670 0.22 -0.6
753,658 - Echvi_0670 0.22 +1.1
753,658 - Echvi_0670 0.22 +0.5
753,658 - Echvi_0670 0.22 -1.7
753,658 - Echvi_0670 0.22 -0.6
753,659 + Echvi_0670 0.22 +0.6
753,659 + Echvi_0670 0.22 -1.2
753,715 + Echvi_0670 0.30 -1.7
753,722 + Echvi_0670 0.31 +0.9
753,722 + Echvi_0670 0.31 -0.5
753,722 + Echvi_0670 0.31 -0.5
753,723 - Echvi_0670 0.31 -1.6
753,723 - Echvi_0670 0.31 -0.3
753,723 - Echvi_0670 0.31 -1.9
753,723 - Echvi_0670 0.31 +0.2
753,723 - Echvi_0670 0.31 -1.1
753,724 + Echvi_0670 0.31 -2.0
753,814 - Echvi_0670 0.44 -0.9
753,818 + Echvi_0670 0.44 -2.4
753,819 - Echvi_0670 0.44 -2.1
753,900 + Echvi_0670 0.55 -0.9
753,991 + Echvi_0670 0.68 +2.1
754,039 + Echvi_0670 0.75 +1.1
754,039 + Echvi_0670 0.75 +0.4
754,039 + Echvi_0670 0.75 -0.2
754,039 + Echvi_0670 0.75 -1.4
754,040 - Echvi_0670 0.75 -0.3
754,040 - Echvi_0670 0.75 +0.1
754,040 - Echvi_0670 0.75 -0.0
754,040 - Echvi_0670 0.75 +0.6
754,040 - Echvi_0670 0.75 -0.9
754,041 + Echvi_0670 0.75 +0.1
754,042 - Echvi_0670 0.75 -2.7
754,042 - Echvi_0670 0.75 -0.8
754,043 + Echvi_0670 0.75 -1.6
754,043 + Echvi_0670 0.75 -0.2
754,060 + Echvi_0670 0.77 -2.1
754,062 + Echvi_0670 0.78 -0.9
754,128 + Echvi_0670 0.87 +0.1
754,224 - +0.7
754,328 + Echvi_0671 0.24 -0.9
754,328 + Echvi_0671 0.24 +0.4
754,329 - Echvi_0671 0.24 +1.1
754,341 - Echvi_0671 0.27 -2.0
754,341 - Echvi_0671 0.27 -0.9
754,342 + Echvi_0671 0.27 +0.4
754,342 + Echvi_0671 0.27 +0.7
754,342 + Echvi_0671 0.27 -0.2
754,344 + Echvi_0671 0.28 -0.1
754,344 + Echvi_0671 0.28 -2.4
754,345 - Echvi_0671 0.28 -1.3
754,345 - Echvi_0671 0.28 +0.1
754,345 - Echvi_0671 0.28 -1.0
754,347 + Echvi_0671 0.29 -0.4
754,347 + Echvi_0671 0.29 -2.9
754,348 - Echvi_0671 0.29 -1.4
754,348 - Echvi_0671 0.29 -0.4
754,438 + Echvi_0671 0.51 +0.1
754,438 + Echvi_0671 0.51 +0.5
754,439 - Echvi_0671 0.51 -1.2
754,540 + Echvi_0671 0.77 +0.4
754,540 + Echvi_0671 0.77 +1.5
754,542 + Echvi_0671 0.77 -1.7
754,542 + Echvi_0671 0.77 -1.4
754,542 + Echvi_0671 0.77 +0.1
754,543 - Echvi_0671 0.77 +0.1
754,543 - Echvi_0671 0.77 -0.3
754,543 - Echvi_0671 0.77 -0.8
754,561 + Echvi_0671 0.82 +0.6
754,562 - Echvi_0671 0.82 +1.1
754,562 - Echvi_0671 0.82 -0.7
754,562 - Echvi_0671 0.82 +0.3
754,562 - Echvi_0671 0.82 +3.7
754,619 + -0.8
754,636 + -0.0
754,636 + +0.7
754,637 - +0.9
754,637 - -0.4
754,640 - +0.1
754,650 + -0.7
754,651 - +0.5
754,667 - -1.4

Or see this region's nucleotide sequence