Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0639 and Echvi_0640 are separated by 106 nucleotides Echvi_0640 and Echvi_0641 are separated by 80 nucleotides Echvi_0641 and Echvi_0642 are separated by 653 nucleotides
Echvi_0639: Echvi_0639 - hypothetical protein, at 723,447 to 723,692
_0639
Echvi_0640: Echvi_0640 - hypothetical protein, at 723,799 to 724,092
_0640
Echvi_0641: Echvi_0641 - Transposase and inactivated derivatives, at 724,173 to 725,405
_0641
Echvi_0642: Echvi_0642 - pseudouridine synthase, RluA family, at 726,059 to 727,153
_0642
Position (kb) 724
725
726 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 723.265 kb on + strand at 723.265 kb on + strand at 723.266 kb on - strand at 723.266 kb on - strand at 723.298 kb on + strand at 723.298 kb on + strand at 723.298 kb on + strand at 723.298 kb on + strand at 723.299 kb on - strand at 723.382 kb on + strand at 723.382 kb on + strand at 723.382 kb on + strand at 723.407 kb on - strand at 723.453 kb on + strand at 723.453 kb on + strand at 723.498 kb on - strand, within Echvi_0639 at 723.498 kb on - strand, within Echvi_0639 at 723.503 kb on + strand, within Echvi_0639 at 723.503 kb on + strand, within Echvi_0639 at 723.503 kb on + strand, within Echvi_0639 at 723.503 kb on + strand, within Echvi_0639 at 723.503 kb on + strand, within Echvi_0639 at 723.503 kb on + strand, within Echvi_0639 at 723.504 kb on - strand, within Echvi_0639 at 723.504 kb on - strand, within Echvi_0639 at 723.504 kb on - strand, within Echvi_0639 at 723.504 kb on - strand, within Echvi_0639 at 723.506 kb on + strand, within Echvi_0639 at 723.506 kb on + strand, within Echvi_0639 at 723.507 kb on - strand, within Echvi_0639 at 723.507 kb on - strand, within Echvi_0639 at 723.507 kb on - strand, within Echvi_0639 at 723.507 kb on - strand, within Echvi_0639 at 723.507 kb on - strand, within Echvi_0639 at 723.507 kb on - strand, within Echvi_0639 at 723.507 kb on - strand, within Echvi_0639 at 723.568 kb on + strand, within Echvi_0639 at 723.740 kb on + strand at 723.824 kb on + strand at 723.824 kb on + strand at 723.825 kb on - strand at 723.825 kb on - strand at 723.899 kb on - strand, within Echvi_0640 at 723.926 kb on - strand, within Echvi_0640 at 723.983 kb on + strand, within Echvi_0640 at 723.984 kb on - strand, within Echvi_0640 at 724.003 kb on + strand, within Echvi_0640 at 724.010 kb on - strand, within Echvi_0640 at 724.010 kb on - strand, within Echvi_0640 at 724.016 kb on - strand, within Echvi_0640 at 724.102 kb on - strand at 725.176 kb on - strand, within Echvi_0641 at 725.658 kb on - strand at 725.658 kb on - strand at 725.667 kb on + strand at 725.667 kb on + strand at 725.668 kb on - strand at 725.682 kb on - strand at 725.688 kb on - strand at 725.698 kb on + strand at 725.699 kb on - strand at 725.708 kb on + strand at 725.773 kb on + strand at 725.773 kb on + strand at 725.773 kb on + strand at 725.774 kb on - strand at 725.774 kb on - strand at 725.776 kb on + strand at 725.777 kb on - strand at 725.808 kb on + strand at 725.992 kb on - strand at 725.999 kb on - strand at 726.078 kb on + strand at 726.208 kb on + strand, within Echvi_0642 at 726.209 kb on - strand, within Echvi_0642 at 726.235 kb on - strand, within Echvi_0642 at 726.309 kb on + strand, within Echvi_0642 at 726.375 kb on + strand at 726.376 kb on - strand at 726.376 kb on - strand, within Echvi_0642
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 723,265 + +2.3 723,265 + -1.0 723,266 - +1.2 723,266 - +0.1 723,298 + -1.4 723,298 + +0.2 723,298 + +0.5 723,298 + +0.1 723,299 - -1.4 723,382 + -1.1 723,382 + -1.7 723,382 + -0.3 723,407 - -0.0 723,453 + -0.7 723,453 + -1.4 723,498 - Echvi_0639 0.21 -1.6 723,498 - Echvi_0639 0.21 +0.6 723,503 + Echvi_0639 0.23 -3.1 723,503 + Echvi_0639 0.23 -0.9 723,503 + Echvi_0639 0.23 -0.9 723,503 + Echvi_0639 0.23 -1.6 723,503 + Echvi_0639 0.23 -0.5 723,503 + Echvi_0639 0.23 +2.0 723,504 - Echvi_0639 0.23 -1.3 723,504 - Echvi_0639 0.23 +0.9 723,504 - Echvi_0639 0.23 -0.6 723,504 - Echvi_0639 0.23 -2.0 723,506 + Echvi_0639 0.24 -1.0 723,506 + Echvi_0639 0.24 -0.6 723,507 - Echvi_0639 0.24 -0.6 723,507 - Echvi_0639 0.24 +1.4 723,507 - Echvi_0639 0.24 -1.3 723,507 - Echvi_0639 0.24 -2.5 723,507 - Echvi_0639 0.24 -0.1 723,507 - Echvi_0639 0.24 -0.2 723,507 - Echvi_0639 0.24 -2.3 723,568 + Echvi_0639 0.49 +1.0 723,740 + +0.7 723,824 + -0.9 723,824 + +0.2 723,825 - +1.3 723,825 - +1.7 723,899 - Echvi_0640 0.34 -0.1 723,926 - Echvi_0640 0.43 -1.3 723,983 + Echvi_0640 0.63 -1.2 723,984 - Echvi_0640 0.63 -0.0 724,003 + Echvi_0640 0.69 +1.1 724,010 - Echvi_0640 0.72 -0.6 724,010 - Echvi_0640 0.72 -1.1 724,016 - Echvi_0640 0.74 +0.3 724,102 - +0.8 725,176 - Echvi_0641 0.81 -1.6 725,658 - -1.1 725,658 - -0.6 725,667 + -2.6 725,667 + -1.3 725,668 - -4.1 725,682 - -0.5 725,688 - -2.1 725,698 + -2.3 725,699 - -0.4 725,708 + -0.8 725,773 + -1.3 725,773 + -1.7 725,773 + +0.9 725,774 - +0.0 725,774 - -2.9 725,776 + -0.6 725,777 - +0.2 725,808 + -1.8 725,992 - +2.1 725,999 - +2.0 726,078 + -0.1 726,208 + Echvi_0642 0.14 +0.1 726,209 - Echvi_0642 0.14 -0.9 726,235 - Echvi_0642 0.16 -3.2 726,309 + Echvi_0642 0.23 -1.7 726,375 + +0.7 726,376 - -0.3 726,376 - Echvi_0642 0.29 -1.0
Or see this region's nucleotide sequence