Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0563

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0562 and Echvi_0563 are separated by 184 nucleotidesEchvi_0563 and Echvi_0564 are separated by 207 nucleotides Echvi_0562: Echvi_0562 - hypothetical protein, at 635,894 to 637,057 _0562 Echvi_0563: Echvi_0563 - hypothetical protein, at 637,242 to 637,490 _0563 Echvi_0564: Echvi_0564 - ribosomal protein S12 methylthiotransferase RimO, at 637,698 to 639,011 _0564 Position (kb) 637 638Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 637.049 kb on + strandat 637.108 kb on + strandat 637.109 kb on - strandat 637.128 kb on + strandat 637.129 kb on - strandat 637.129 kb on - strandat 637.129 kb on - strandat 637.188 kb on + strandat 637.188 kb on + strandat 637.189 kb on - strandat 637.211 kb on + strandat 637.211 kb on + strandat 637.258 kb on - strandat 637.317 kb on + strand, within Echvi_0563at 637.353 kb on - strand, within Echvi_0563at 637.364 kb on - strand, within Echvi_0563at 637.376 kb on - strand, within Echvi_0563at 637.388 kb on + strand, within Echvi_0563at 637.401 kb on - strand, within Echvi_0563at 637.401 kb on - strand, within Echvi_0563at 637.402 kb on + strand, within Echvi_0563at 637.402 kb on + strand, within Echvi_0563at 637.412 kb on + strand, within Echvi_0563at 637.412 kb on + strand, within Echvi_0563at 637.412 kb on + strand, within Echvi_0563at 637.412 kb on + strand, within Echvi_0563at 637.413 kb on - strand, within Echvi_0563at 637.414 kb on + strand, within Echvi_0563at 637.425 kb on - strand, within Echvi_0563at 637.425 kb on - strand, within Echvi_0563at 637.440 kb on - strand, within Echvi_0563at 637.457 kb on + strand, within Echvi_0563at 637.458 kb on - strand, within Echvi_0563at 637.508 kb on + strandat 637.513 kb on + strandat 637.513 kb on + strandat 637.525 kb on + strandat 637.560 kb on - strandat 637.593 kb on - strandat 637.593 kb on - strandat 637.602 kb on - strandat 637.819 kb on - strandat 637.849 kb on + strand, within Echvi_0564at 637.850 kb on - strand, within Echvi_0564at 637.850 kb on - strand, within Echvi_0564at 637.850 kb on - strand, within Echvi_0564at 637.907 kb on + strand, within Echvi_0564at 637.995 kb on - strand, within Echvi_0564at 637.995 kb on - strand, within Echvi_0564at 637.995 kb on - strand, within Echvi_0564at 638.006 kb on + strand, within Echvi_0564at 638.006 kb on + strand, within Echvi_0564at 638.006 kb on + strand, within Echvi_0564at 638.006 kb on + strand, within Echvi_0564at 638.006 kb on + strand, within Echvi_0564at 638.007 kb on - strand, within Echvi_0564at 638.007 kb on - strand, within Echvi_0564at 638.007 kb on - strand, within Echvi_0564at 638.007 kb on - strand, within Echvi_0564at 638.007 kb on - strand, within Echvi_0564at 638.023 kb on + strand, within Echvi_0564at 638.027 kb on + strand, within Echvi_0564at 638.027 kb on + strand, within Echvi_0564at 638.028 kb on - strand, within Echvi_0564at 638.028 kb on - strand, within Echvi_0564at 638.123 kb on + strand, within Echvi_0564at 638.124 kb on - strand, within Echvi_0564at 638.129 kb on + strand, within Echvi_0564at 638.139 kb on - strand, within Echvi_0564at 638.168 kb on + strand, within Echvi_0564at 638.169 kb on - strand, within Echvi_0564at 638.169 kb on - strand, within Echvi_0564at 638.246 kb on + strand, within Echvi_0564at 638.247 kb on - strand, within Echvi_0564at 638.259 kb on - strand, within Echvi_0564at 638.312 kb on + strand, within Echvi_0564at 638.324 kb on - strand, within Echvi_0564at 638.324 kb on - strand, within Echvi_0564at 638.416 kb on + strand, within Echvi_0564at 638.416 kb on + strand, within Echvi_0564at 638.416 kb on + strand, within Echvi_0564

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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637,049 + -1.6
637,108 + -2.2
637,109 - +0.0
637,128 + -0.4
637,129 - +0.3
637,129 - +0.1
637,129 - +0.1
637,188 + +0.9
637,188 + -1.1
637,189 - +1.4
637,211 + -1.3
637,211 + -0.6
637,258 - -1.1
637,317 + Echvi_0563 0.30 +1.4
637,353 - Echvi_0563 0.45 -0.6
637,364 - Echvi_0563 0.49 +0.0
637,376 - Echvi_0563 0.54 +1.7
637,388 + Echvi_0563 0.59 -1.0
637,401 - Echvi_0563 0.64 -0.4
637,401 - Echvi_0563 0.64 +0.1
637,402 + Echvi_0563 0.64 +0.7
637,402 + Echvi_0563 0.64 +0.7
637,412 + Echvi_0563 0.68 -0.3
637,412 + Echvi_0563 0.68 -0.4
637,412 + Echvi_0563 0.68 +0.5
637,412 + Echvi_0563 0.68 +0.9
637,413 - Echvi_0563 0.69 +1.1
637,414 + Echvi_0563 0.69 -3.1
637,425 - Echvi_0563 0.73 -0.6
637,425 - Echvi_0563 0.73 +1.1
637,440 - Echvi_0563 0.80 +1.1
637,457 + Echvi_0563 0.86 -1.2
637,458 - Echvi_0563 0.87 -0.8
637,508 + +0.7
637,513 + -0.1
637,513 + +0.3
637,525 + -0.2
637,560 - +0.8
637,593 - +2.7
637,593 - +0.1
637,602 - -2.2
637,819 - +0.1
637,849 + Echvi_0564 0.11 -1.8
637,850 - Echvi_0564 0.12 -0.7
637,850 - Echvi_0564 0.12 +0.2
637,850 - Echvi_0564 0.12 -0.0
637,907 + Echvi_0564 0.16 +0.5
637,995 - Echvi_0564 0.23 -2.4
637,995 - Echvi_0564 0.23 +0.2
637,995 - Echvi_0564 0.23 +0.2
638,006 + Echvi_0564 0.23 +0.4
638,006 + Echvi_0564 0.23 +2.1
638,006 + Echvi_0564 0.23 -0.1
638,006 + Echvi_0564 0.23 -0.3
638,006 + Echvi_0564 0.23 -1.1
638,007 - Echvi_0564 0.24 -0.3
638,007 - Echvi_0564 0.24 -1.9
638,007 - Echvi_0564 0.24 -0.6
638,007 - Echvi_0564 0.24 -0.8
638,007 - Echvi_0564 0.24 -1.4
638,023 + Echvi_0564 0.25 -0.3
638,027 + Echvi_0564 0.25 -0.8
638,027 + Echvi_0564 0.25 -2.4
638,028 - Echvi_0564 0.25 -0.9
638,028 - Echvi_0564 0.25 +0.2
638,123 + Echvi_0564 0.32 +0.0
638,124 - Echvi_0564 0.32 -2.4
638,129 + Echvi_0564 0.33 +0.7
638,139 - Echvi_0564 0.34 +0.1
638,168 + Echvi_0564 0.36 -2.0
638,169 - Echvi_0564 0.36 -0.0
638,169 - Echvi_0564 0.36 -2.3
638,246 + Echvi_0564 0.42 -2.1
638,247 - Echvi_0564 0.42 -1.6
638,259 - Echvi_0564 0.43 +0.7
638,312 + Echvi_0564 0.47 -0.3
638,324 - Echvi_0564 0.48 -2.1
638,324 - Echvi_0564 0.48 -0.6
638,416 + Echvi_0564 0.55 -1.4
638,416 + Echvi_0564 0.55 -1.2
638,416 + Echvi_0564 0.55 +0.1

Or see this region's nucleotide sequence