Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0519 and Echvi_0520 are separated by 0 nucleotides Echvi_0520 and Echvi_0521 are separated by 83 nucleotides Echvi_0521 and Echvi_0522 are separated by 12 nucleotides
Echvi_0519: Echvi_0519 - Beta-xylosidase, at 583,499 to 584,986
_0519
Echvi_0520: Echvi_0520 - Beta-xylosidase, at 584,987 to 585,970
_0520
Echvi_0521: Echvi_0521 - hypothetical protein, at 586,054 to 586,737
_0521
Echvi_0522: Echvi_0522 - SusD family., at 586,750 to 588,612
_0522
Position (kb) 584
585
586 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 583.991 kb on - strand, within Echvi_0519 at 584.138 kb on - strand, within Echvi_0519 at 584.140 kb on - strand, within Echvi_0519 at 584.160 kb on + strand, within Echvi_0519 at 584.160 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.179 kb on - strand, within Echvi_0519 at 584.179 kb on - strand, within Echvi_0519 at 584.325 kb on + strand, within Echvi_0519 at 584.326 kb on - strand, within Echvi_0519 at 584.326 kb on - strand, within Echvi_0519 at 584.326 kb on - strand, within Echvi_0519 at 584.326 kb on - strand at 584.326 kb on - strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.328 kb on - strand, within Echvi_0519 at 584.329 kb on + strand, within Echvi_0519 at 584.329 kb on + strand, within Echvi_0519 at 584.329 kb on + strand, within Echvi_0519 at 584.330 kb on - strand, within Echvi_0519 at 584.337 kb on + strand, within Echvi_0519 at 584.349 kb on + strand, within Echvi_0519 at 584.352 kb on + strand, within Echvi_0519 at 584.352 kb on + strand, within Echvi_0519 at 584.352 kb on + strand, within Echvi_0519 at 584.353 kb on - strand, within Echvi_0519 at 584.353 kb on - strand, within Echvi_0519 at 584.353 kb on - strand, within Echvi_0519 at 584.378 kb on + strand, within Echvi_0519 at 584.422 kb on + strand, within Echvi_0519 at 584.422 kb on + strand, within Echvi_0519 at 584.483 kb on + strand, within Echvi_0519 at 584.484 kb on - strand, within Echvi_0519 at 584.526 kb on + strand, within Echvi_0519 at 584.526 kb on + strand, within Echvi_0519 at 584.526 kb on + strand, within Echvi_0519 at 584.526 kb on + strand, within Echvi_0519 at 584.526 kb on + strand, within Echvi_0519 at 584.527 kb on - strand, within Echvi_0519 at 584.527 kb on - strand, within Echvi_0519 at 584.527 kb on - strand, within Echvi_0519 at 584.529 kb on + strand, within Echvi_0519 at 584.529 kb on + strand, within Echvi_0519 at 584.529 kb on + strand, within Echvi_0519 at 584.530 kb on - strand, within Echvi_0519 at 584.530 kb on - strand, within Echvi_0519 at 584.536 kb on + strand, within Echvi_0519 at 584.537 kb on - strand, within Echvi_0519 at 584.537 kb on - strand, within Echvi_0519 at 584.562 kb on + strand, within Echvi_0519 at 584.608 kb on + strand, within Echvi_0519 at 584.609 kb on - strand, within Echvi_0519 at 584.640 kb on + strand, within Echvi_0519 at 584.640 kb on + strand, within Echvi_0519 at 584.704 kb on + strand, within Echvi_0519 at 584.704 kb on + strand, within Echvi_0519 at 584.721 kb on + strand, within Echvi_0519 at 584.722 kb on - strand, within Echvi_0519 at 584.722 kb on - strand, within Echvi_0519 at 584.737 kb on + strand, within Echvi_0519 at 584.739 kb on + strand, within Echvi_0519 at 584.740 kb on - strand, within Echvi_0519 at 584.745 kb on + strand, within Echvi_0519 at 584.746 kb on - strand, within Echvi_0519 at 584.765 kb on + strand, within Echvi_0519 at 584.768 kb on + strand, within Echvi_0519 at 584.788 kb on + strand, within Echvi_0519 at 584.788 kb on + strand, within Echvi_0519 at 584.789 kb on - strand, within Echvi_0519 at 584.790 kb on + strand, within Echvi_0519 at 584.790 kb on + strand, within Echvi_0519 at 584.791 kb on - strand, within Echvi_0519 at 584.791 kb on - strand, within Echvi_0519 at 584.828 kb on - strand, within Echvi_0519 at 584.835 kb on + strand, within Echvi_0519 at 584.835 kb on + strand, within Echvi_0519 at 584.836 kb on - strand, within Echvi_0519 at 584.836 kb on - strand, within Echvi_0519 at 584.836 kb on - strand, within Echvi_0519 at 584.839 kb on + strand at 584.840 kb on - strand at 584.893 kb on + strand at 584.893 kb on + strand at 584.948 kb on + strand at 584.948 kb on + strand at 584.949 kb on - strand at 584.988 kb on + strand at 584.988 kb on + strand at 584.996 kb on + strand at 584.996 kb on + strand at 584.996 kb on + strand at 584.996 kb on + strand at 584.997 kb on - strand at 585.022 kb on + strand at 585.043 kb on + strand at 585.043 kb on + strand at 585.044 kb on - strand at 585.078 kb on + strand at 585.078 kb on + strand at 585.117 kb on + strand, within Echvi_0520 at 585.127 kb on + strand, within Echvi_0520 at 585.127 kb on + strand, within Echvi_0520 at 585.172 kb on + strand, within Echvi_0520 at 585.173 kb on - strand, within Echvi_0520 at 585.186 kb on + strand, within Echvi_0520 at 585.186 kb on + strand, within Echvi_0520 at 585.187 kb on - strand, within Echvi_0520 at 585.187 kb on - strand, within Echvi_0520 at 585.190 kb on + strand, within Echvi_0520 at 585.190 kb on + strand, within Echvi_0520 at 585.190 kb on + strand, within Echvi_0520 at 585.190 kb on + strand, within Echvi_0520 at 585.191 kb on - strand, within Echvi_0520 at 585.209 kb on + strand, within Echvi_0520 at 585.233 kb on - strand, within Echvi_0520 at 585.253 kb on + strand, within Echvi_0520 at 585.254 kb on - strand, within Echvi_0520 at 585.256 kb on - strand, within Echvi_0520 at 585.306 kb on + strand, within Echvi_0520 at 585.306 kb on + strand, within Echvi_0520 at 585.306 kb on + strand, within Echvi_0520 at 585.306 kb on + strand, within Echvi_0520 at 585.307 kb on - strand, within Echvi_0520 at 585.403 kb on + strand, within Echvi_0520 at 585.403 kb on + strand, within Echvi_0520 at 585.404 kb on - strand, within Echvi_0520 at 585.405 kb on + strand, within Echvi_0520 at 585.439 kb on + strand, within Echvi_0520 at 585.524 kb on - strand, within Echvi_0520 at 585.610 kb on + strand, within Echvi_0520 at 585.678 kb on + strand, within Echvi_0520 at 585.679 kb on - strand, within Echvi_0520 at 585.679 kb on - strand, within Echvi_0520 at 585.679 kb on - strand, within Echvi_0520 at 585.687 kb on + strand, within Echvi_0520 at 585.691 kb on - strand, within Echvi_0520 at 585.858 kb on + strand, within Echvi_0520 at 585.858 kb on + strand, within Echvi_0520 at 585.861 kb on + strand, within Echvi_0520 at 585.861 kb on + strand, within Echvi_0520 at 585.861 kb on + strand, within Echvi_0520 at 585.862 kb on - strand, within Echvi_0520 at 585.862 kb on - strand, within Echvi_0520 at 585.952 kb on + strand at 586.024 kb on + strand at 586.024 kb on + strand at 586.025 kb on - strand at 586.045 kb on - strand at 586.055 kb on + strand at 586.086 kb on - strand at 586.120 kb on + strand at 586.120 kb on + strand at 586.132 kb on + strand, within Echvi_0521 at 586.133 kb on - strand, within Echvi_0521 at 586.150 kb on + strand, within Echvi_0521 at 586.150 kb on + strand, within Echvi_0521 at 586.150 kb on + strand, within Echvi_0521 at 586.268 kb on + strand, within Echvi_0521 at 586.268 kb on + strand, within Echvi_0521 at 586.269 kb on - strand, within Echvi_0521 at 586.335 kb on + strand, within Echvi_0521 at 586.336 kb on - strand, within Echvi_0521 at 586.336 kb on - strand, within Echvi_0521 at 586.338 kb on + strand, within Echvi_0521 at 586.338 kb on + strand, within Echvi_0521 at 586.338 kb on + strand, within Echvi_0521 at 586.338 kb on + strand, within Echvi_0521 at 586.339 kb on - strand, within Echvi_0521 at 586.339 kb on - strand, within Echvi_0521 at 586.355 kb on + strand, within Echvi_0521 at 586.360 kb on - strand, within Echvi_0521 at 586.379 kb on + strand, within Echvi_0521 at 586.484 kb on + strand, within Echvi_0521 at 586.623 kb on - strand, within Echvi_0521 at 586.665 kb on + strand, within Echvi_0521 at 586.670 kb on + strand at 586.690 kb on - strand at 586.725 kb on + strand at 586.730 kb on - strand at 586.730 kb on - strand at 586.737 kb on + strand at 586.795 kb on - strand at 586.814 kb on + strand at 586.814 kb on + strand at 586.817 kb on + strand at 586.817 kb on + strand at 586.818 kb on - strand at 586.818 kb on - strand at 586.818 kb on - strand at 586.818 kb on - strand at 586.880 kb on + strand at 586.881 kb on - strand at 586.881 kb on - strand at 586.881 kb on - strand at 586.884 kb on + strand at 586.884 kb on + strand at 586.884 kb on + strand at 586.884 kb on + strand at 586.885 kb on - strand at 586.885 kb on - strand at 586.919 kb on + strand at 586.920 kb on - strand at 586.933 kb on - strand at 586.934 kb on + strand at 586.941 kb on + strand, within Echvi_0522 at 586.941 kb on + strand, within Echvi_0522 at 586.962 kb on + strand, within Echvi_0522 at 586.962 kb on + strand, within Echvi_0522 at 586.962 kb on + strand, within Echvi_0522 at 586.963 kb on - strand, within Echvi_0522
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 583,991 - Echvi_0519 0.33 +1.6 584,138 - Echvi_0519 0.43 +3.7 584,140 - Echvi_0519 0.43 +3.6 584,160 + Echvi_0519 0.44 +0.0 584,160 + Echvi_0519 0.44 -0.3 584,178 + Echvi_0519 0.46 -0.6 584,178 + Echvi_0519 0.46 -0.4 584,178 + Echvi_0519 0.46 +0.3 584,178 + Echvi_0519 0.46 +0.0 584,178 + Echvi_0519 0.46 +0.4 584,179 - Echvi_0519 0.46 +1.7 584,179 - Echvi_0519 0.46 +2.7 584,325 + Echvi_0519 0.56 +1.2 584,326 - Echvi_0519 0.56 +3.8 584,326 - Echvi_0519 0.56 +2.1 584,326 - Echvi_0519 0.56 +3.0 584,326 - +4.5 584,326 - Echvi_0519 0.56 +4.7 584,327 + Echvi_0519 0.56 +0.2 584,327 + Echvi_0519 0.56 +0.2 584,327 + Echvi_0519 0.56 +0.9 584,327 + Echvi_0519 0.56 +1.7 584,327 + Echvi_0519 0.56 -0.6 584,328 - Echvi_0519 0.56 +2.6 584,329 + Echvi_0519 0.56 +0.7 584,329 + Echvi_0519 0.56 +0.8 584,329 + Echvi_0519 0.56 +0.3 584,330 - Echvi_0519 0.56 +3.7 584,337 + Echvi_0519 0.56 +1.3 584,349 + Echvi_0519 0.57 -0.3 584,352 + Echvi_0519 0.57 -0.7 584,352 + Echvi_0519 0.57 -0.4 584,352 + Echvi_0519 0.57 +0.6 584,353 - Echvi_0519 0.57 +2.0 584,353 - Echvi_0519 0.57 +2.1 584,353 - Echvi_0519 0.57 +2.4 584,378 + Echvi_0519 0.59 -0.6 584,422 + Echvi_0519 0.62 -0.2 584,422 + Echvi_0519 0.62 +0.8 584,483 + Echvi_0519 0.66 +0.1 584,484 - Echvi_0519 0.66 +2.9 584,526 + Echvi_0519 0.69 +0.2 584,526 + Echvi_0519 0.69 +3.2 584,526 + Echvi_0519 0.69 -0.1 584,526 + Echvi_0519 0.69 +0.3 584,526 + Echvi_0519 0.69 +0.9 584,527 - Echvi_0519 0.69 +4.5 584,527 - Echvi_0519 0.69 +3.0 584,527 - Echvi_0519 0.69 +3.1 584,529 + Echvi_0519 0.69 -0.6 584,529 + Echvi_0519 0.69 -0.2 584,529 + Echvi_0519 0.69 +0.6 584,530 - Echvi_0519 0.69 +2.8 584,530 - Echvi_0519 0.69 +1.4 584,536 + Echvi_0519 0.70 +0.4 584,537 - Echvi_0519 0.70 +2.8 584,537 - Echvi_0519 0.70 +0.3 584,562 + Echvi_0519 0.71 +2.4 584,608 + Echvi_0519 0.75 +0.3 584,609 - Echvi_0519 0.75 +0.8 584,640 + Echvi_0519 0.77 -1.3 584,640 + Echvi_0519 0.77 -0.5 584,704 + Echvi_0519 0.81 +0.4 584,704 + Echvi_0519 0.81 -0.9 584,721 + Echvi_0519 0.82 -0.7 584,722 - Echvi_0519 0.82 +2.5 584,722 - Echvi_0519 0.82 +2.2 584,737 + Echvi_0519 0.83 -0.1 584,739 + Echvi_0519 0.83 +0.8 584,740 - Echvi_0519 0.83 +3.0 584,745 + Echvi_0519 0.84 +0.1 584,746 - Echvi_0519 0.84 +4.3 584,765 + Echvi_0519 0.85 -1.4 584,768 + Echvi_0519 0.85 -1.4 584,788 + Echvi_0519 0.87 +0.3 584,788 + Echvi_0519 0.87 -0.8 584,789 - Echvi_0519 0.87 +2.5 584,790 + Echvi_0519 0.87 +0.4 584,790 + Echvi_0519 0.87 -0.4 584,791 - Echvi_0519 0.87 +1.5 584,791 - Echvi_0519 0.87 +2.9 584,828 - Echvi_0519 0.89 +2.5 584,835 + Echvi_0519 0.90 +0.2 584,835 + Echvi_0519 0.90 +1.7 584,836 - Echvi_0519 0.90 +2.9 584,836 - Echvi_0519 0.90 +3.0 584,836 - Echvi_0519 0.90 +0.8 584,839 + -0.0 584,840 - +2.6 584,893 + -0.9 584,893 + +0.1 584,948 + +0.4 584,948 + -0.3 584,949 - +4.1 584,988 + -1.7 584,988 + +0.5 584,996 + -0.6 584,996 + -1.9 584,996 + +2.6 584,996 + +3.3 584,997 - +3.0 585,022 + -0.3 585,043 + +1.4 585,043 + -1.3 585,044 - +2.8 585,078 + +1.4 585,078 + -0.0 585,117 + Echvi_0520 0.13 -1.0 585,127 + Echvi_0520 0.14 +0.5 585,127 + Echvi_0520 0.14 +0.9 585,172 + Echvi_0520 0.19 +0.7 585,173 - Echvi_0520 0.19 +2.5 585,186 + Echvi_0520 0.20 +1.7 585,186 + Echvi_0520 0.20 -0.5 585,187 - Echvi_0520 0.20 +2.3 585,187 - Echvi_0520 0.20 +2.4 585,190 + Echvi_0520 0.21 +0.3 585,190 + Echvi_0520 0.21 -0.7 585,190 + Echvi_0520 0.21 -2.4 585,190 + Echvi_0520 0.21 +0.7 585,191 - Echvi_0520 0.21 +3.1 585,209 + Echvi_0520 0.23 +0.1 585,233 - Echvi_0520 0.25 +1.7 585,253 + Echvi_0520 0.27 -0.6 585,254 - Echvi_0520 0.27 +3.5 585,256 - Echvi_0520 0.27 +2.3 585,306 + Echvi_0520 0.32 -0.8 585,306 + Echvi_0520 0.32 +0.9 585,306 + Echvi_0520 0.32 -1.4 585,306 + Echvi_0520 0.32 -0.1 585,307 - Echvi_0520 0.33 +2.3 585,403 + Echvi_0520 0.42 -1.0 585,403 + Echvi_0520 0.42 +1.2 585,404 - Echvi_0520 0.42 +2.4 585,405 + Echvi_0520 0.42 -1.1 585,439 + Echvi_0520 0.46 +0.4 585,524 - Echvi_0520 0.55 +2.7 585,610 + Echvi_0520 0.63 -0.6 585,678 + Echvi_0520 0.70 -2.3 585,679 - Echvi_0520 0.70 +2.7 585,679 - Echvi_0520 0.70 +3.0 585,679 - Echvi_0520 0.70 +1.8 585,687 + Echvi_0520 0.71 -1.3 585,691 - Echvi_0520 0.72 +2.0 585,858 + Echvi_0520 0.89 +0.4 585,858 + Echvi_0520 0.89 -0.3 585,861 + Echvi_0520 0.89 +2.3 585,861 + Echvi_0520 0.89 +0.5 585,861 + Echvi_0520 0.89 -0.6 585,862 - Echvi_0520 0.89 +2.2 585,862 - Echvi_0520 0.89 +2.7 585,952 + +1.9 586,024 + -0.7 586,024 + +0.1 586,025 - -0.2 586,045 - +2.4 586,055 + +0.4 586,086 - +1.3 586,120 + -0.5 586,120 + -1.1 586,132 + Echvi_0521 0.11 -2.3 586,133 - Echvi_0521 0.12 +0.7 586,150 + Echvi_0521 0.14 -0.4 586,150 + Echvi_0521 0.14 -1.1 586,150 + Echvi_0521 0.14 -2.0 586,268 + Echvi_0521 0.31 +0.8 586,268 + Echvi_0521 0.31 +0.9 586,269 - Echvi_0521 0.31 +2.0 586,335 + Echvi_0521 0.41 +0.4 586,336 - Echvi_0521 0.41 +1.9 586,336 - Echvi_0521 0.41 +1.9 586,338 + Echvi_0521 0.42 -1.7 586,338 + Echvi_0521 0.42 +1.0 586,338 + Echvi_0521 0.42 +1.7 586,338 + Echvi_0521 0.42 -0.8 586,339 - Echvi_0521 0.42 +0.7 586,339 - Echvi_0521 0.42 +2.7 586,355 + Echvi_0521 0.44 +0.2 586,360 - Echvi_0521 0.45 +1.5 586,379 + Echvi_0521 0.48 -1.5 586,484 + Echvi_0521 0.63 +0.4 586,623 - Echvi_0521 0.83 +1.1 586,665 + Echvi_0521 0.89 +1.5 586,670 + -0.7 586,690 - +0.4 586,725 + -1.1 586,730 - +1.7 586,730 - +2.2 586,737 + +0.4 586,795 - +3.1 586,814 + -0.6 586,814 + -0.3 586,817 + +0.2 586,817 + -1.3 586,818 - +1.7 586,818 - +1.9 586,818 - +1.0 586,818 - +1.9 586,880 + -2.2 586,881 - +2.8 586,881 - +1.7 586,881 - +2.7 586,884 + +0.1 586,884 + +0.6 586,884 + -0.1 586,884 + +1.3 586,885 - +0.9 586,885 - +2.5 586,919 + -0.7 586,920 - +1.1 586,933 - +1.5 586,934 + +0.7 586,941 + Echvi_0522 0.10 -0.6 586,941 + Echvi_0522 0.10 +0.1 586,962 + Echvi_0522 0.11 -2.0 586,962 + Echvi_0522 0.11 -0.9 586,962 + Echvi_0522 0.11 +1.4 586,963 - Echvi_0522 0.11 -1.1
Or see this region's nucleotide sequence