Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0518 and Echvi_0519 are separated by 3 nucleotides Echvi_0519 and Echvi_0520 are separated by 0 nucleotides
Echvi_0518: Echvi_0518 - Uncharacterized protein conserved in bacteria, at 581,141 to 583,495
_0518
Echvi_0519: Echvi_0519 - Beta-xylosidase, at 583,499 to 584,986
_0519
Echvi_0520: Echvi_0520 - Beta-xylosidase, at 584,987 to 585,970
_0520
Position (kb) 583
584
585 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 582.561 kb on - strand, within Echvi_0518 at 582.642 kb on - strand, within Echvi_0518 at 582.718 kb on + strand, within Echvi_0518 at 582.788 kb on - strand, within Echvi_0518 at 582.788 kb on - strand, within Echvi_0518 at 582.878 kb on - strand, within Echvi_0518 at 582.897 kb on + strand, within Echvi_0518 at 582.923 kb on + strand, within Echvi_0518 at 582.923 kb on + strand, within Echvi_0518 at 582.924 kb on - strand, within Echvi_0518 at 582.924 kb on - strand, within Echvi_0518 at 582.957 kb on + strand, within Echvi_0518 at 582.957 kb on + strand, within Echvi_0518 at 582.958 kb on - strand, within Echvi_0518 at 582.994 kb on + strand, within Echvi_0518 at 582.995 kb on - strand, within Echvi_0518 at 582.995 kb on - strand, within Echvi_0518 at 582.995 kb on - strand, within Echvi_0518 at 583.098 kb on + strand, within Echvi_0518 at 583.099 kb on - strand, within Echvi_0518 at 583.144 kb on + strand, within Echvi_0518 at 583.145 kb on - strand, within Echvi_0518 at 583.145 kb on - strand, within Echvi_0518 at 583.145 kb on - strand, within Echvi_0518 at 583.145 kb on - strand, within Echvi_0518 at 583.146 kb on + strand, within Echvi_0518 at 583.146 kb on + strand, within Echvi_0518 at 583.146 kb on + strand, within Echvi_0518 at 583.147 kb on - strand, within Echvi_0518 at 583.147 kb on - strand, within Echvi_0518 at 583.188 kb on + strand, within Echvi_0518 at 583.188 kb on + strand, within Echvi_0518 at 583.189 kb on - strand, within Echvi_0518 at 583.212 kb on + strand, within Echvi_0518 at 583.212 kb on + strand, within Echvi_0518 at 583.213 kb on - strand, within Echvi_0518 at 583.281 kb on - strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.300 kb on - strand at 583.300 kb on - strand at 583.300 kb on - strand at 583.300 kb on - strand at 583.300 kb on - strand at 583.300 kb on - strand at 583.337 kb on - strand at 583.338 kb on + strand at 583.339 kb on - strand at 583.388 kb on + strand at 583.412 kb on + strand at 583.501 kb on - strand at 583.618 kb on + strand at 583.618 kb on + strand at 583.618 kb on + strand at 583.622 kb on + strand at 583.622 kb on + strand at 583.640 kb on + strand at 583.640 kb on + strand at 583.640 kb on + strand at 583.640 kb on + strand at 583.640 kb on + strand at 583.641 kb on - strand at 583.641 kb on - strand at 583.727 kb on + strand, within Echvi_0519 at 583.738 kb on + strand, within Echvi_0519 at 583.738 kb on + strand, within Echvi_0519 at 583.790 kb on + strand, within Echvi_0519 at 583.791 kb on - strand, within Echvi_0519 at 583.791 kb on - strand, within Echvi_0519 at 583.791 kb on - strand, within Echvi_0519 at 583.920 kb on + strand, within Echvi_0519 at 583.991 kb on - strand, within Echvi_0519 at 584.138 kb on - strand, within Echvi_0519 at 584.140 kb on - strand, within Echvi_0519 at 584.160 kb on + strand, within Echvi_0519 at 584.160 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.179 kb on - strand, within Echvi_0519 at 584.179 kb on - strand, within Echvi_0519 at 584.325 kb on + strand, within Echvi_0519 at 584.326 kb on - strand, within Echvi_0519 at 584.326 kb on - strand, within Echvi_0519 at 584.326 kb on - strand, within Echvi_0519 at 584.326 kb on - strand at 584.326 kb on - strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.328 kb on - strand, within Echvi_0519 at 584.329 kb on + strand, within Echvi_0519 at 584.329 kb on + strand, within Echvi_0519 at 584.329 kb on + strand, within Echvi_0519 at 584.330 kb on - strand, within Echvi_0519 at 584.337 kb on + strand, within Echvi_0519 at 584.349 kb on + strand, within Echvi_0519 at 584.352 kb on + strand, within Echvi_0519 at 584.352 kb on + strand, within Echvi_0519 at 584.352 kb on + strand, within Echvi_0519 at 584.353 kb on - strand, within Echvi_0519 at 584.353 kb on - strand, within Echvi_0519 at 584.353 kb on - strand, within Echvi_0519 at 584.378 kb on + strand, within Echvi_0519 at 584.422 kb on + strand, within Echvi_0519 at 584.422 kb on + strand, within Echvi_0519 at 584.483 kb on + strand, within Echvi_0519 at 584.484 kb on - strand, within Echvi_0519 at 584.526 kb on + strand, within Echvi_0519 at 584.526 kb on + strand, within Echvi_0519 at 584.526 kb on + strand, within Echvi_0519 at 584.526 kb on + strand, within Echvi_0519 at 584.526 kb on + strand, within Echvi_0519 at 584.527 kb on - strand, within Echvi_0519 at 584.527 kb on - strand, within Echvi_0519 at 584.527 kb on - strand, within Echvi_0519 at 584.529 kb on + strand, within Echvi_0519 at 584.529 kb on + strand, within Echvi_0519 at 584.529 kb on + strand, within Echvi_0519 at 584.530 kb on - strand, within Echvi_0519 at 584.530 kb on - strand, within Echvi_0519 at 584.536 kb on + strand, within Echvi_0519 at 584.537 kb on - strand, within Echvi_0519 at 584.537 kb on - strand, within Echvi_0519 at 584.562 kb on + strand, within Echvi_0519 at 584.608 kb on + strand, within Echvi_0519 at 584.609 kb on - strand, within Echvi_0519 at 584.640 kb on + strand, within Echvi_0519 at 584.640 kb on + strand, within Echvi_0519 at 584.704 kb on + strand, within Echvi_0519 at 584.704 kb on + strand, within Echvi_0519 at 584.721 kb on + strand, within Echvi_0519 at 584.722 kb on - strand, within Echvi_0519 at 584.722 kb on - strand, within Echvi_0519 at 584.737 kb on + strand, within Echvi_0519 at 584.739 kb on + strand, within Echvi_0519 at 584.740 kb on - strand, within Echvi_0519 at 584.745 kb on + strand, within Echvi_0519 at 584.746 kb on - strand, within Echvi_0519 at 584.765 kb on + strand, within Echvi_0519 at 584.768 kb on + strand, within Echvi_0519 at 584.788 kb on + strand, within Echvi_0519 at 584.788 kb on + strand, within Echvi_0519 at 584.789 kb on - strand, within Echvi_0519 at 584.790 kb on + strand, within Echvi_0519 at 584.790 kb on + strand, within Echvi_0519 at 584.791 kb on - strand, within Echvi_0519 at 584.791 kb on - strand, within Echvi_0519 at 584.828 kb on - strand, within Echvi_0519 at 584.835 kb on + strand, within Echvi_0519 at 584.835 kb on + strand, within Echvi_0519 at 584.836 kb on - strand, within Echvi_0519 at 584.836 kb on - strand, within Echvi_0519 at 584.836 kb on - strand, within Echvi_0519 at 584.839 kb on + strand at 584.840 kb on - strand at 584.893 kb on + strand at 584.893 kb on + strand at 584.948 kb on + strand at 584.948 kb on + strand at 584.949 kb on - strand at 584.988 kb on + strand at 584.988 kb on + strand at 584.996 kb on + strand at 584.996 kb on + strand at 584.996 kb on + strand at 584.996 kb on + strand at 584.997 kb on - strand at 585.022 kb on + strand at 585.043 kb on + strand at 585.043 kb on + strand at 585.044 kb on - strand at 585.078 kb on + strand at 585.078 kb on + strand at 585.117 kb on + strand, within Echvi_0520 at 585.127 kb on + strand, within Echvi_0520 at 585.127 kb on + strand, within Echvi_0520 at 585.172 kb on + strand, within Echvi_0520 at 585.173 kb on - strand, within Echvi_0520 at 585.186 kb on + strand, within Echvi_0520 at 585.186 kb on + strand, within Echvi_0520 at 585.187 kb on - strand, within Echvi_0520 at 585.187 kb on - strand, within Echvi_0520 at 585.190 kb on + strand, within Echvi_0520 at 585.190 kb on + strand, within Echvi_0520 at 585.190 kb on + strand, within Echvi_0520 at 585.190 kb on + strand, within Echvi_0520 at 585.191 kb on - strand, within Echvi_0520 at 585.209 kb on + strand, within Echvi_0520 at 585.233 kb on - strand, within Echvi_0520 at 585.253 kb on + strand, within Echvi_0520 at 585.254 kb on - strand, within Echvi_0520 at 585.256 kb on - strand, within Echvi_0520 at 585.306 kb on + strand, within Echvi_0520 at 585.306 kb on + strand, within Echvi_0520 at 585.306 kb on + strand, within Echvi_0520 at 585.306 kb on + strand, within Echvi_0520 at 585.307 kb on - strand, within Echvi_0520 at 585.403 kb on + strand, within Echvi_0520 at 585.403 kb on + strand, within Echvi_0520 at 585.404 kb on - strand, within Echvi_0520 at 585.405 kb on + strand, within Echvi_0520 at 585.439 kb on + strand, within Echvi_0520 at 585.524 kb on - strand, within Echvi_0520 at 585.610 kb on + strand, within Echvi_0520 at 585.678 kb on + strand, within Echvi_0520 at 585.679 kb on - strand, within Echvi_0520 at 585.679 kb on - strand, within Echvi_0520 at 585.679 kb on - strand, within Echvi_0520 at 585.687 kb on + strand, within Echvi_0520 at 585.691 kb on - strand, within Echvi_0520 at 585.858 kb on + strand, within Echvi_0520 at 585.858 kb on + strand, within Echvi_0520 at 585.861 kb on + strand, within Echvi_0520 at 585.861 kb on + strand, within Echvi_0520 at 585.861 kb on + strand, within Echvi_0520 at 585.862 kb on - strand, within Echvi_0520 at 585.862 kb on - strand, within Echvi_0520 at 585.952 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 582,561 - Echvi_0518 0.60 +2.3 582,642 - Echvi_0518 0.64 +2.9 582,718 + Echvi_0518 0.67 -0.0 582,788 - Echvi_0518 0.70 +4.2 582,788 - Echvi_0518 0.70 +3.0 582,878 - Echvi_0518 0.74 -0.1 582,897 + Echvi_0518 0.75 -1.4 582,923 + Echvi_0518 0.76 -0.8 582,923 + Echvi_0518 0.76 -1.1 582,924 - Echvi_0518 0.76 +5.1 582,924 - Echvi_0518 0.76 -2.0 582,957 + Echvi_0518 0.77 +0.1 582,957 + Echvi_0518 0.77 +0.3 582,958 - Echvi_0518 0.77 -0.3 582,994 + Echvi_0518 0.79 -0.1 582,995 - Echvi_0518 0.79 +0.2 582,995 - Echvi_0518 0.79 +1.6 582,995 - Echvi_0518 0.79 +1.2 583,098 + Echvi_0518 0.83 +0.4 583,099 - Echvi_0518 0.83 +3.2 583,144 + Echvi_0518 0.85 -1.6 583,145 - Echvi_0518 0.85 +0.1 583,145 - Echvi_0518 0.85 +3.1 583,145 - Echvi_0518 0.85 +1.8 583,145 - Echvi_0518 0.85 +1.7 583,146 + Echvi_0518 0.85 +0.2 583,146 + Echvi_0518 0.85 +1.4 583,146 + Echvi_0518 0.85 -0.1 583,147 - Echvi_0518 0.85 +1.2 583,147 - Echvi_0518 0.85 +2.0 583,188 + Echvi_0518 0.87 +0.3 583,188 + Echvi_0518 0.87 +1.2 583,189 - Echvi_0518 0.87 +1.5 583,212 + Echvi_0518 0.88 -0.1 583,212 + Echvi_0518 0.88 +0.7 583,213 - Echvi_0518 0.88 +1.2 583,281 - +1.9 583,299 + +1.2 583,299 + -1.0 583,299 + +1.9 583,299 + +0.5 583,299 + +0.5 583,299 + -0.1 583,299 + -0.2 583,299 + -0.1 583,299 + +1.2 583,299 + -1.6 583,299 + +0.0 583,299 + -1.5 583,299 + +0.5 583,299 + -1.8 583,300 - +0.3 583,300 - +0.2 583,300 - +1.2 583,300 - +1.3 583,300 - +1.6 583,300 - +2.4 583,337 - -0.1 583,338 + +0.5 583,339 - +2.6 583,388 + +1.7 583,412 + +1.5 583,501 - +3.6 583,618 + +0.2 583,618 + -0.5 583,618 + +0.4 583,622 + +0.6 583,622 + -2.4 583,640 + +1.3 583,640 + +0.2 583,640 + -0.1 583,640 + -0.2 583,640 + +1.3 583,641 - +3.3 583,641 - +3.7 583,727 + Echvi_0519 0.15 +1.0 583,738 + Echvi_0519 0.16 -1.1 583,738 + Echvi_0519 0.16 +0.2 583,790 + Echvi_0519 0.20 +0.7 583,791 - Echvi_0519 0.20 +2.9 583,791 - Echvi_0519 0.20 +3.9 583,791 - Echvi_0519 0.20 +1.4 583,920 + Echvi_0519 0.28 +1.7 583,991 - Echvi_0519 0.33 +1.6 584,138 - Echvi_0519 0.43 +3.7 584,140 - Echvi_0519 0.43 +3.6 584,160 + Echvi_0519 0.44 +0.0 584,160 + Echvi_0519 0.44 -0.3 584,178 + Echvi_0519 0.46 -0.6 584,178 + Echvi_0519 0.46 -0.4 584,178 + Echvi_0519 0.46 +0.3 584,178 + Echvi_0519 0.46 +0.0 584,178 + Echvi_0519 0.46 +0.4 584,179 - Echvi_0519 0.46 +1.7 584,179 - Echvi_0519 0.46 +2.7 584,325 + Echvi_0519 0.56 +1.2 584,326 - Echvi_0519 0.56 +3.8 584,326 - Echvi_0519 0.56 +2.1 584,326 - Echvi_0519 0.56 +3.0 584,326 - +4.5 584,326 - Echvi_0519 0.56 +4.7 584,327 + Echvi_0519 0.56 +0.2 584,327 + Echvi_0519 0.56 +0.2 584,327 + Echvi_0519 0.56 +0.9 584,327 + Echvi_0519 0.56 +1.7 584,327 + Echvi_0519 0.56 -0.6 584,328 - Echvi_0519 0.56 +2.6 584,329 + Echvi_0519 0.56 +0.7 584,329 + Echvi_0519 0.56 +0.8 584,329 + Echvi_0519 0.56 +0.3 584,330 - Echvi_0519 0.56 +3.7 584,337 + Echvi_0519 0.56 +1.3 584,349 + Echvi_0519 0.57 -0.3 584,352 + Echvi_0519 0.57 -0.7 584,352 + Echvi_0519 0.57 -0.4 584,352 + Echvi_0519 0.57 +0.6 584,353 - Echvi_0519 0.57 +2.0 584,353 - Echvi_0519 0.57 +2.1 584,353 - Echvi_0519 0.57 +2.4 584,378 + Echvi_0519 0.59 -0.6 584,422 + Echvi_0519 0.62 -0.2 584,422 + Echvi_0519 0.62 +0.8 584,483 + Echvi_0519 0.66 +0.1 584,484 - Echvi_0519 0.66 +2.9 584,526 + Echvi_0519 0.69 +0.2 584,526 + Echvi_0519 0.69 +3.2 584,526 + Echvi_0519 0.69 -0.1 584,526 + Echvi_0519 0.69 +0.3 584,526 + Echvi_0519 0.69 +0.9 584,527 - Echvi_0519 0.69 +4.5 584,527 - Echvi_0519 0.69 +3.0 584,527 - Echvi_0519 0.69 +3.1 584,529 + Echvi_0519 0.69 -0.6 584,529 + Echvi_0519 0.69 -0.2 584,529 + Echvi_0519 0.69 +0.6 584,530 - Echvi_0519 0.69 +2.8 584,530 - Echvi_0519 0.69 +1.4 584,536 + Echvi_0519 0.70 +0.4 584,537 - Echvi_0519 0.70 +2.8 584,537 - Echvi_0519 0.70 +0.3 584,562 + Echvi_0519 0.71 +2.4 584,608 + Echvi_0519 0.75 +0.3 584,609 - Echvi_0519 0.75 +0.8 584,640 + Echvi_0519 0.77 -1.3 584,640 + Echvi_0519 0.77 -0.5 584,704 + Echvi_0519 0.81 +0.4 584,704 + Echvi_0519 0.81 -0.9 584,721 + Echvi_0519 0.82 -0.7 584,722 - Echvi_0519 0.82 +2.5 584,722 - Echvi_0519 0.82 +2.2 584,737 + Echvi_0519 0.83 -0.1 584,739 + Echvi_0519 0.83 +0.8 584,740 - Echvi_0519 0.83 +3.0 584,745 + Echvi_0519 0.84 +0.1 584,746 - Echvi_0519 0.84 +4.3 584,765 + Echvi_0519 0.85 -1.4 584,768 + Echvi_0519 0.85 -1.4 584,788 + Echvi_0519 0.87 +0.3 584,788 + Echvi_0519 0.87 -0.8 584,789 - Echvi_0519 0.87 +2.5 584,790 + Echvi_0519 0.87 +0.4 584,790 + Echvi_0519 0.87 -0.4 584,791 - Echvi_0519 0.87 +1.5 584,791 - Echvi_0519 0.87 +2.9 584,828 - Echvi_0519 0.89 +2.5 584,835 + Echvi_0519 0.90 +0.2 584,835 + Echvi_0519 0.90 +1.7 584,836 - Echvi_0519 0.90 +2.9 584,836 - Echvi_0519 0.90 +3.0 584,836 - Echvi_0519 0.90 +0.8 584,839 + -0.0 584,840 - +2.6 584,893 + -0.9 584,893 + +0.1 584,948 + +0.4 584,948 + -0.3 584,949 - +4.1 584,988 + -1.7 584,988 + +0.5 584,996 + -0.6 584,996 + -1.9 584,996 + +2.6 584,996 + +3.3 584,997 - +3.0 585,022 + -0.3 585,043 + +1.4 585,043 + -1.3 585,044 - +2.8 585,078 + +1.4 585,078 + -0.0 585,117 + Echvi_0520 0.13 -1.0 585,127 + Echvi_0520 0.14 +0.5 585,127 + Echvi_0520 0.14 +0.9 585,172 + Echvi_0520 0.19 +0.7 585,173 - Echvi_0520 0.19 +2.5 585,186 + Echvi_0520 0.20 +1.7 585,186 + Echvi_0520 0.20 -0.5 585,187 - Echvi_0520 0.20 +2.3 585,187 - Echvi_0520 0.20 +2.4 585,190 + Echvi_0520 0.21 +0.3 585,190 + Echvi_0520 0.21 -0.7 585,190 + Echvi_0520 0.21 -2.4 585,190 + Echvi_0520 0.21 +0.7 585,191 - Echvi_0520 0.21 +3.1 585,209 + Echvi_0520 0.23 +0.1 585,233 - Echvi_0520 0.25 +1.7 585,253 + Echvi_0520 0.27 -0.6 585,254 - Echvi_0520 0.27 +3.5 585,256 - Echvi_0520 0.27 +2.3 585,306 + Echvi_0520 0.32 -0.8 585,306 + Echvi_0520 0.32 +0.9 585,306 + Echvi_0520 0.32 -1.4 585,306 + Echvi_0520 0.32 -0.1 585,307 - Echvi_0520 0.33 +2.3 585,403 + Echvi_0520 0.42 -1.0 585,403 + Echvi_0520 0.42 +1.2 585,404 - Echvi_0520 0.42 +2.4 585,405 + Echvi_0520 0.42 -1.1 585,439 + Echvi_0520 0.46 +0.4 585,524 - Echvi_0520 0.55 +2.7 585,610 + Echvi_0520 0.63 -0.6 585,678 + Echvi_0520 0.70 -2.3 585,679 - Echvi_0520 0.70 +2.7 585,679 - Echvi_0520 0.70 +3.0 585,679 - Echvi_0520 0.70 +1.8 585,687 + Echvi_0520 0.71 -1.3 585,691 - Echvi_0520 0.72 +2.0 585,858 + Echvi_0520 0.89 +0.4 585,858 + Echvi_0520 0.89 -0.3 585,861 + Echvi_0520 0.89 +2.3 585,861 + Echvi_0520 0.89 +0.5 585,861 + Echvi_0520 0.89 -0.6 585,862 - Echvi_0520 0.89 +2.2 585,862 - Echvi_0520 0.89 +2.7 585,952 + +1.9
Or see this region's nucleotide sequence