Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0517 and Echvi_0518 are separated by 99 nucleotides Echvi_0518 and Echvi_0519 are separated by 3 nucleotides
Echvi_0517: Echvi_0517 - Glycoside hydrolase 97., at 579,110 to 581,041
_0517
Echvi_0518: Echvi_0518 - Uncharacterized protein conserved in bacteria, at 581,141 to 583,495
_0518
Echvi_0519: Echvi_0519 - Beta-xylosidase, at 583,499 to 584,986
_0519
Position (kb) 581
582
583
584 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 580.219 kb on + strand, within Echvi_0517 at 580.534 kb on + strand, within Echvi_0517 at 580.538 kb on + strand, within Echvi_0517 at 580.612 kb on + strand, within Echvi_0517 at 580.612 kb on + strand, within Echvi_0517 at 580.613 kb on - strand, within Echvi_0517 at 580.613 kb on - strand, within Echvi_0517 at 580.616 kb on + strand, within Echvi_0517 at 580.616 kb on + strand, within Echvi_0517 at 580.616 kb on + strand, within Echvi_0517 at 580.617 kb on - strand, within Echvi_0517 at 580.617 kb on - strand, within Echvi_0517 at 580.617 kb on - strand, within Echvi_0517 at 580.740 kb on + strand, within Echvi_0517 at 580.740 kb on + strand, within Echvi_0517 at 580.776 kb on + strand, within Echvi_0517 at 580.777 kb on - strand, within Echvi_0517 at 580.777 kb on - strand, within Echvi_0517 at 580.833 kb on - strand, within Echvi_0517 at 580.874 kb on + strand at 580.874 kb on + strand at 580.874 kb on + strand at 580.875 kb on - strand at 580.875 kb on - strand at 580.898 kb on - strand at 581.009 kb on - strand at 581.009 kb on - strand at 581.031 kb on - strand at 581.107 kb on + strand at 581.142 kb on + strand at 581.142 kb on + strand at 581.400 kb on + strand, within Echvi_0518 at 581.458 kb on + strand, within Echvi_0518 at 581.637 kb on - strand, within Echvi_0518 at 581.643 kb on + strand, within Echvi_0518 at 581.643 kb on + strand, within Echvi_0518 at 581.644 kb on - strand, within Echvi_0518 at 581.681 kb on + strand, within Echvi_0518 at 581.681 kb on + strand, within Echvi_0518 at 581.974 kb on + strand, within Echvi_0518 at 582.045 kb on - strand, within Echvi_0518 at 582.045 kb on - strand, within Echvi_0518 at 582.095 kb on - strand, within Echvi_0518 at 582.118 kb on + strand, within Echvi_0518 at 582.123 kb on - strand, within Echvi_0518 at 582.123 kb on - strand, within Echvi_0518 at 582.161 kb on - strand, within Echvi_0518 at 582.212 kb on - strand, within Echvi_0518 at 582.241 kb on - strand, within Echvi_0518 at 582.241 kb on - strand at 582.244 kb on + strand, within Echvi_0518 at 582.255 kb on + strand, within Echvi_0518 at 582.255 kb on + strand, within Echvi_0518 at 582.284 kb on + strand, within Echvi_0518 at 582.284 kb on + strand, within Echvi_0518 at 582.318 kb on + strand, within Echvi_0518 at 582.319 kb on - strand, within Echvi_0518 at 582.320 kb on + strand, within Echvi_0518 at 582.320 kb on + strand, within Echvi_0518 at 582.395 kb on - strand, within Echvi_0518 at 582.400 kb on + strand, within Echvi_0518 at 582.402 kb on + strand, within Echvi_0518 at 582.402 kb on + strand, within Echvi_0518 at 582.402 kb on + strand, within Echvi_0518 at 582.403 kb on - strand, within Echvi_0518 at 582.403 kb on - strand, within Echvi_0518 at 582.403 kb on - strand, within Echvi_0518 at 582.446 kb on - strand, within Echvi_0518 at 582.451 kb on + strand, within Echvi_0518 at 582.452 kb on - strand, within Echvi_0518 at 582.483 kb on + strand, within Echvi_0518 at 582.483 kb on + strand, within Echvi_0518 at 582.483 kb on + strand, within Echvi_0518 at 582.484 kb on - strand, within Echvi_0518 at 582.484 kb on - strand, within Echvi_0518 at 582.487 kb on + strand, within Echvi_0518 at 582.561 kb on - strand, within Echvi_0518 at 582.642 kb on - strand, within Echvi_0518 at 582.718 kb on + strand, within Echvi_0518 at 582.788 kb on - strand, within Echvi_0518 at 582.788 kb on - strand, within Echvi_0518 at 582.878 kb on - strand, within Echvi_0518 at 582.897 kb on + strand, within Echvi_0518 at 582.923 kb on + strand, within Echvi_0518 at 582.923 kb on + strand, within Echvi_0518 at 582.924 kb on - strand, within Echvi_0518 at 582.924 kb on - strand, within Echvi_0518 at 582.957 kb on + strand, within Echvi_0518 at 582.957 kb on + strand, within Echvi_0518 at 582.958 kb on - strand, within Echvi_0518 at 582.994 kb on + strand, within Echvi_0518 at 582.995 kb on - strand, within Echvi_0518 at 582.995 kb on - strand, within Echvi_0518 at 582.995 kb on - strand, within Echvi_0518 at 583.098 kb on + strand, within Echvi_0518 at 583.099 kb on - strand, within Echvi_0518 at 583.144 kb on + strand, within Echvi_0518 at 583.145 kb on - strand, within Echvi_0518 at 583.145 kb on - strand, within Echvi_0518 at 583.145 kb on - strand, within Echvi_0518 at 583.145 kb on - strand, within Echvi_0518 at 583.146 kb on + strand, within Echvi_0518 at 583.146 kb on + strand, within Echvi_0518 at 583.146 kb on + strand, within Echvi_0518 at 583.147 kb on - strand, within Echvi_0518 at 583.147 kb on - strand, within Echvi_0518 at 583.188 kb on + strand, within Echvi_0518 at 583.188 kb on + strand, within Echvi_0518 at 583.189 kb on - strand, within Echvi_0518 at 583.212 kb on + strand, within Echvi_0518 at 583.212 kb on + strand, within Echvi_0518 at 583.213 kb on - strand, within Echvi_0518 at 583.281 kb on - strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.300 kb on - strand at 583.300 kb on - strand at 583.300 kb on - strand at 583.300 kb on - strand at 583.300 kb on - strand at 583.300 kb on - strand at 583.337 kb on - strand at 583.338 kb on + strand at 583.339 kb on - strand at 583.388 kb on + strand at 583.412 kb on + strand at 583.501 kb on - strand at 583.618 kb on + strand at 583.618 kb on + strand at 583.618 kb on + strand at 583.622 kb on + strand at 583.622 kb on + strand at 583.640 kb on + strand at 583.640 kb on + strand at 583.640 kb on + strand at 583.640 kb on + strand at 583.640 kb on + strand at 583.641 kb on - strand at 583.641 kb on - strand at 583.727 kb on + strand, within Echvi_0519 at 583.738 kb on + strand, within Echvi_0519 at 583.738 kb on + strand, within Echvi_0519 at 583.790 kb on + strand, within Echvi_0519 at 583.791 kb on - strand, within Echvi_0519 at 583.791 kb on - strand, within Echvi_0519 at 583.791 kb on - strand, within Echvi_0519 at 583.920 kb on + strand, within Echvi_0519 at 583.991 kb on - strand, within Echvi_0519 at 584.138 kb on - strand, within Echvi_0519 at 584.140 kb on - strand, within Echvi_0519 at 584.160 kb on + strand, within Echvi_0519 at 584.160 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.179 kb on - strand, within Echvi_0519 at 584.179 kb on - strand, within Echvi_0519 at 584.325 kb on + strand, within Echvi_0519 at 584.326 kb on - strand, within Echvi_0519 at 584.326 kb on - strand, within Echvi_0519 at 584.326 kb on - strand, within Echvi_0519 at 584.326 kb on - strand at 584.326 kb on - strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.328 kb on - strand, within Echvi_0519 at 584.329 kb on + strand, within Echvi_0519 at 584.329 kb on + strand, within Echvi_0519 at 584.329 kb on + strand, within Echvi_0519 at 584.330 kb on - strand, within Echvi_0519 at 584.337 kb on + strand, within Echvi_0519 at 584.349 kb on + strand, within Echvi_0519 at 584.352 kb on + strand, within Echvi_0519 at 584.352 kb on + strand, within Echvi_0519 at 584.352 kb on + strand, within Echvi_0519 at 584.353 kb on - strand, within Echvi_0519 at 584.353 kb on - strand, within Echvi_0519 at 584.353 kb on - strand, within Echvi_0519 at 584.378 kb on + strand, within Echvi_0519 at 584.422 kb on + strand, within Echvi_0519 at 584.422 kb on + strand, within Echvi_0519 at 584.483 kb on + strand, within Echvi_0519 at 584.484 kb on - strand, within Echvi_0519
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 580,219 + Echvi_0517 0.57 +0.0 580,534 + Echvi_0517 0.74 -0.3 580,538 + Echvi_0517 0.74 -0.3 580,612 + Echvi_0517 0.78 -2.1 580,612 + Echvi_0517 0.78 +0.7 580,613 - Echvi_0517 0.78 +1.5 580,613 - Echvi_0517 0.78 +2.3 580,616 + Echvi_0517 0.78 -1.7 580,616 + Echvi_0517 0.78 +2.2 580,616 + Echvi_0517 0.78 +0.8 580,617 - Echvi_0517 0.78 +2.7 580,617 - Echvi_0517 0.78 +3.1 580,617 - Echvi_0517 0.78 +1.5 580,740 + Echvi_0517 0.84 -1.4 580,740 + Echvi_0517 0.84 +0.7 580,776 + Echvi_0517 0.86 -1.7 580,777 - Echvi_0517 0.86 +1.7 580,777 - Echvi_0517 0.86 +2.2 580,833 - Echvi_0517 0.89 +2.5 580,874 + -0.6 580,874 + -0.6 580,874 + +0.8 580,875 - +1.5 580,875 - +2.6 580,898 - +2.6 581,009 - +1.9 581,009 - +2.6 581,031 - +2.5 581,107 + -1.6 581,142 + -1.2 581,142 + +0.2 581,400 + Echvi_0518 0.11 +0.4 581,458 + Echvi_0518 0.13 -0.4 581,637 - Echvi_0518 0.21 +6.3 581,643 + Echvi_0518 0.21 -0.0 581,643 + Echvi_0518 0.21 -0.6 581,644 - Echvi_0518 0.21 +2.9 581,681 + Echvi_0518 0.23 +0.2 581,681 + Echvi_0518 0.23 +0.5 581,974 + Echvi_0518 0.35 +0.4 582,045 - Echvi_0518 0.38 +0.2 582,045 - Echvi_0518 0.38 +3.2 582,095 - Echvi_0518 0.41 +1.9 582,118 + Echvi_0518 0.41 -3.2 582,123 - Echvi_0518 0.42 +1.5 582,123 - Echvi_0518 0.42 +3.7 582,161 - Echvi_0518 0.43 +3.1 582,212 - Echvi_0518 0.45 +2.7 582,241 - Echvi_0518 0.47 +2.3 582,241 - +4.3 582,244 + Echvi_0518 0.47 +1.0 582,255 + Echvi_0518 0.47 +1.2 582,255 + Echvi_0518 0.47 +0.4 582,284 + Echvi_0518 0.49 +0.7 582,284 + Echvi_0518 0.49 -2.2 582,318 + Echvi_0518 0.50 -0.4 582,319 - Echvi_0518 0.50 +2.7 582,320 + Echvi_0518 0.50 -0.2 582,320 + Echvi_0518 0.50 -1.2 582,395 - Echvi_0518 0.53 +3.2 582,400 + Echvi_0518 0.53 +0.4 582,402 + Echvi_0518 0.54 +0.4 582,402 + Echvi_0518 0.54 +1.7 582,402 + Echvi_0518 0.54 -0.7 582,403 - Echvi_0518 0.54 +1.8 582,403 - Echvi_0518 0.54 +3.5 582,403 - Echvi_0518 0.54 +1.5 582,446 - Echvi_0518 0.55 +1.6 582,451 + Echvi_0518 0.56 -0.7 582,452 - Echvi_0518 0.56 +2.1 582,483 + Echvi_0518 0.57 +0.2 582,483 + Echvi_0518 0.57 -0.8 582,483 + Echvi_0518 0.57 +1.9 582,484 - Echvi_0518 0.57 +1.2 582,484 - Echvi_0518 0.57 +1.7 582,487 + Echvi_0518 0.57 -0.9 582,561 - Echvi_0518 0.60 +2.3 582,642 - Echvi_0518 0.64 +2.9 582,718 + Echvi_0518 0.67 -0.0 582,788 - Echvi_0518 0.70 +4.2 582,788 - Echvi_0518 0.70 +3.0 582,878 - Echvi_0518 0.74 -0.1 582,897 + Echvi_0518 0.75 -1.4 582,923 + Echvi_0518 0.76 -0.8 582,923 + Echvi_0518 0.76 -1.1 582,924 - Echvi_0518 0.76 +5.1 582,924 - Echvi_0518 0.76 -2.0 582,957 + Echvi_0518 0.77 +0.1 582,957 + Echvi_0518 0.77 +0.3 582,958 - Echvi_0518 0.77 -0.3 582,994 + Echvi_0518 0.79 -0.1 582,995 - Echvi_0518 0.79 +0.2 582,995 - Echvi_0518 0.79 +1.6 582,995 - Echvi_0518 0.79 +1.2 583,098 + Echvi_0518 0.83 +0.4 583,099 - Echvi_0518 0.83 +3.2 583,144 + Echvi_0518 0.85 -1.6 583,145 - Echvi_0518 0.85 +0.1 583,145 - Echvi_0518 0.85 +3.1 583,145 - Echvi_0518 0.85 +1.8 583,145 - Echvi_0518 0.85 +1.7 583,146 + Echvi_0518 0.85 +0.2 583,146 + Echvi_0518 0.85 +1.4 583,146 + Echvi_0518 0.85 -0.1 583,147 - Echvi_0518 0.85 +1.2 583,147 - Echvi_0518 0.85 +2.0 583,188 + Echvi_0518 0.87 +0.3 583,188 + Echvi_0518 0.87 +1.2 583,189 - Echvi_0518 0.87 +1.5 583,212 + Echvi_0518 0.88 -0.1 583,212 + Echvi_0518 0.88 +0.7 583,213 - Echvi_0518 0.88 +1.2 583,281 - +1.9 583,299 + +1.2 583,299 + -1.0 583,299 + +1.9 583,299 + +0.5 583,299 + +0.5 583,299 + -0.1 583,299 + -0.2 583,299 + -0.1 583,299 + +1.2 583,299 + -1.6 583,299 + +0.0 583,299 + -1.5 583,299 + +0.5 583,299 + -1.8 583,300 - +0.3 583,300 - +0.2 583,300 - +1.2 583,300 - +1.3 583,300 - +1.6 583,300 - +2.4 583,337 - -0.1 583,338 + +0.5 583,339 - +2.6 583,388 + +1.7 583,412 + +1.5 583,501 - +3.6 583,618 + +0.2 583,618 + -0.5 583,618 + +0.4 583,622 + +0.6 583,622 + -2.4 583,640 + +1.3 583,640 + +0.2 583,640 + -0.1 583,640 + -0.2 583,640 + +1.3 583,641 - +3.3 583,641 - +3.7 583,727 + Echvi_0519 0.15 +1.0 583,738 + Echvi_0519 0.16 -1.1 583,738 + Echvi_0519 0.16 +0.2 583,790 + Echvi_0519 0.20 +0.7 583,791 - Echvi_0519 0.20 +2.9 583,791 - Echvi_0519 0.20 +3.9 583,791 - Echvi_0519 0.20 +1.4 583,920 + Echvi_0519 0.28 +1.7 583,991 - Echvi_0519 0.33 +1.6 584,138 - Echvi_0519 0.43 +3.7 584,140 - Echvi_0519 0.43 +3.6 584,160 + Echvi_0519 0.44 +0.0 584,160 + Echvi_0519 0.44 -0.3 584,178 + Echvi_0519 0.46 -0.6 584,178 + Echvi_0519 0.46 -0.4 584,178 + Echvi_0519 0.46 +0.3 584,178 + Echvi_0519 0.46 +0.0 584,178 + Echvi_0519 0.46 +0.4 584,179 - Echvi_0519 0.46 +1.7 584,179 - Echvi_0519 0.46 +2.7 584,325 + Echvi_0519 0.56 +1.2 584,326 - Echvi_0519 0.56 +3.8 584,326 - Echvi_0519 0.56 +2.1 584,326 - Echvi_0519 0.56 +3.0 584,326 - +4.5 584,326 - Echvi_0519 0.56 +4.7 584,327 + Echvi_0519 0.56 +0.2 584,327 + Echvi_0519 0.56 +0.2 584,327 + Echvi_0519 0.56 +0.9 584,327 + Echvi_0519 0.56 +1.7 584,327 + Echvi_0519 0.56 -0.6 584,328 - Echvi_0519 0.56 +2.6 584,329 + Echvi_0519 0.56 +0.7 584,329 + Echvi_0519 0.56 +0.8 584,329 + Echvi_0519 0.56 +0.3 584,330 - Echvi_0519 0.56 +3.7 584,337 + Echvi_0519 0.56 +1.3 584,349 + Echvi_0519 0.57 -0.3 584,352 + Echvi_0519 0.57 -0.7 584,352 + Echvi_0519 0.57 -0.4 584,352 + Echvi_0519 0.57 +0.6 584,353 - Echvi_0519 0.57 +2.0 584,353 - Echvi_0519 0.57 +2.1 584,353 - Echvi_0519 0.57 +2.4 584,378 + Echvi_0519 0.59 -0.6 584,422 + Echvi_0519 0.62 -0.2 584,422 + Echvi_0519 0.62 +0.8 584,483 + Echvi_0519 0.66 +0.1 584,484 - Echvi_0519 0.66 +2.9
Or see this region's nucleotide sequence