Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0477 and Echvi_0478 are separated by 101 nucleotides Echvi_0478 and Echvi_0479 are separated by 309 nucleotides
Echvi_0477: Echvi_0477 - Exopolyphosphatase, at 523,306 to 524,853
_0477
Echvi_0478: Echvi_0478 - 6-phosphogluconate dehydrogenase, decarboxylating, at 524,955 to 526,865
_0478
Echvi_0479: Echvi_0479 - Predicted dehydrogenases and related proteins, at 527,175 to 528,251
_0479
Position (kb) 524
525
526
527 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 523.981 kb on + strand, within Echvi_0477 at 523.981 kb on + strand, within Echvi_0477 at 523.981 kb on + strand, within Echvi_0477 at 523.981 kb on + strand, within Echvi_0477 at 523.981 kb on + strand, within Echvi_0477 at 523.981 kb on + strand, within Echvi_0477 at 523.982 kb on - strand, within Echvi_0477 at 523.982 kb on - strand, within Echvi_0477 at 523.982 kb on - strand, within Echvi_0477 at 524.059 kb on - strand, within Echvi_0477 at 524.123 kb on - strand, within Echvi_0477 at 524.162 kb on - strand, within Echvi_0477 at 524.317 kb on - strand, within Echvi_0477 at 524.333 kb on - strand, within Echvi_0477 at 524.571 kb on + strand, within Echvi_0477 at 524.656 kb on + strand, within Echvi_0477 at 524.662 kb on + strand, within Echvi_0477 at 524.662 kb on + strand, within Echvi_0477 at 524.662 kb on + strand, within Echvi_0477 at 524.667 kb on - strand, within Echvi_0477 at 524.683 kb on + strand, within Echvi_0477 at 524.683 kb on + strand, within Echvi_0477 at 524.696 kb on + strand, within Echvi_0477 at 524.696 kb on + strand, within Echvi_0477 at 524.697 kb on - strand, within Echvi_0477 at 524.697 kb on - strand, within Echvi_0477 at 524.766 kb on + strand at 524.766 kb on + strand at 524.766 kb on + strand at 524.770 kb on + strand at 524.770 kb on + strand at 524.770 kb on + strand at 524.771 kb on - strand at 524.771 kb on - strand at 524.771 kb on - strand at 524.771 kb on - strand at 524.771 kb on - strand at 524.833 kb on - strand at 524.837 kb on - strand at 524.837 kb on - strand at 524.837 kb on - strand at 524.880 kb on - strand at 524.899 kb on - strand at 524.903 kb on - strand at 524.918 kb on + strand at 524.918 kb on + strand at 524.922 kb on + strand at 524.922 kb on + strand at 524.922 kb on + strand at 525.060 kb on + strand at 525.060 kb on + strand at 525.162 kb on + strand, within Echvi_0478 at 525.162 kb on + strand, within Echvi_0478 at 525.243 kb on + strand, within Echvi_0478 at 525.244 kb on - strand, within Echvi_0478 at 525.400 kb on + strand, within Echvi_0478 at 525.400 kb on + strand, within Echvi_0478 at 525.400 kb on + strand, within Echvi_0478 at 525.400 kb on + strand, within Echvi_0478 at 525.498 kb on - strand, within Echvi_0478 at 525.563 kb on + strand, within Echvi_0478 at 525.676 kb on + strand, within Echvi_0478 at 525.677 kb on - strand, within Echvi_0478 at 525.783 kb on + strand, within Echvi_0478 at 525.783 kb on + strand, within Echvi_0478 at 525.784 kb on - strand, within Echvi_0478 at 525.784 kb on - strand, within Echvi_0478 at 525.784 kb on - strand, within Echvi_0478 at 525.793 kb on + strand, within Echvi_0478 at 525.793 kb on + strand, within Echvi_0478 at 525.794 kb on - strand, within Echvi_0478 at 525.850 kb on + strand, within Echvi_0478 at 525.850 kb on + strand, within Echvi_0478 at 525.850 kb on + strand, within Echvi_0478 at 525.850 kb on + strand, within Echvi_0478 at 525.858 kb on - strand, within Echvi_0478 at 525.858 kb on - strand, within Echvi_0478 at 525.858 kb on - strand, within Echvi_0478 at 525.875 kb on + strand, within Echvi_0478 at 525.960 kb on + strand, within Echvi_0478 at 526.024 kb on + strand, within Echvi_0478 at 526.025 kb on - strand, within Echvi_0478 at 526.071 kb on + strand, within Echvi_0478 at 526.071 kb on + strand, within Echvi_0478 at 526.213 kb on - strand, within Echvi_0478 at 526.267 kb on - strand, within Echvi_0478 at 526.267 kb on - strand, within Echvi_0478 at 526.296 kb on + strand, within Echvi_0478 at 526.302 kb on + strand, within Echvi_0478 at 526.374 kb on + strand, within Echvi_0478 at 526.403 kb on + strand, within Echvi_0478 at 526.413 kb on + strand, within Echvi_0478 at 526.413 kb on + strand, within Echvi_0478 at 526.414 kb on - strand, within Echvi_0478 at 526.419 kb on - strand, within Echvi_0478 at 526.443 kb on + strand, within Echvi_0478 at 526.443 kb on + strand, within Echvi_0478 at 526.491 kb on + strand, within Echvi_0478 at 526.508 kb on + strand, within Echvi_0478 at 526.508 kb on + strand, within Echvi_0478 at 526.509 kb on - strand, within Echvi_0478 at 526.509 kb on - strand, within Echvi_0478 at 526.510 kb on + strand, within Echvi_0478 at 526.510 kb on + strand, within Echvi_0478 at 526.511 kb on - strand, within Echvi_0478 at 526.511 kb on - strand, within Echvi_0478 at 526.511 kb on - strand, within Echvi_0478 at 526.511 kb on - strand, within Echvi_0478 at 526.511 kb on - strand, within Echvi_0478 at 526.511 kb on - strand, within Echvi_0478 at 526.511 kb on - strand, within Echvi_0478 at 526.511 kb on - strand, within Echvi_0478 at 526.532 kb on + strand, within Echvi_0478 at 526.532 kb on + strand, within Echvi_0478 at 526.854 kb on + strand at 526.914 kb on + strand at 526.914 kb on + strand at 526.914 kb on + strand at 526.954 kb on + strand at 526.997 kb on + strand at 527.055 kb on - strand at 527.055 kb on - strand at 527.055 kb on - strand at 527.072 kb on - strand at 527.140 kb on + strand at 527.141 kb on - strand at 527.217 kb on - strand at 527.217 kb on - strand at 527.348 kb on + strand, within Echvi_0479 at 527.348 kb on + strand, within Echvi_0479 at 527.349 kb on - strand, within Echvi_0479 at 527.349 kb on - strand, within Echvi_0479 at 527.393 kb on + strand, within Echvi_0479 at 527.393 kb on + strand, within Echvi_0479 at 527.394 kb on - strand, within Echvi_0479 at 527.394 kb on - strand, within Echvi_0479 at 527.419 kb on - strand, within Echvi_0479 at 527.477 kb on + strand, within Echvi_0479 at 527.478 kb on - strand, within Echvi_0479 at 527.482 kb on + strand, within Echvi_0479 at 527.545 kb on - strand, within Echvi_0479 at 527.545 kb on - strand, within Echvi_0479 at 527.545 kb on - strand, within Echvi_0479 at 527.547 kb on - strand, within Echvi_0479 at 527.715 kb on + strand, within Echvi_0479 at 527.715 kb on + strand, within Echvi_0479 at 527.715 kb on + strand, within Echvi_0479 at 527.716 kb on - strand, within Echvi_0479 at 527.793 kb on - strand, within Echvi_0479 at 527.808 kb on + strand, within Echvi_0479 at 527.809 kb on - strand, within Echvi_0479 at 527.809 kb on - strand, within Echvi_0479 at 527.810 kb on + strand, within Echvi_0479 at 527.810 kb on + strand, within Echvi_0479 at 527.815 kb on - strand, within Echvi_0479
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 523,981 + Echvi_0477 0.44 +0.2 523,981 + Echvi_0477 0.44 +0.1 523,981 + Echvi_0477 0.44 +0.1 523,981 + Echvi_0477 0.44 -1.0 523,981 + Echvi_0477 0.44 -0.4 523,981 + Echvi_0477 0.44 -1.1 523,982 - Echvi_0477 0.44 +0.3 523,982 - Echvi_0477 0.44 +0.7 523,982 - Echvi_0477 0.44 -1.6 524,059 - Echvi_0477 0.49 -1.1 524,123 - Echvi_0477 0.53 +1.1 524,162 - Echvi_0477 0.55 +0.1 524,317 - Echvi_0477 0.65 -2.5 524,333 - Echvi_0477 0.66 +1.3 524,571 + Echvi_0477 0.82 -0.7 524,656 + Echvi_0477 0.87 +0.7 524,662 + Echvi_0477 0.88 +0.3 524,662 + Echvi_0477 0.88 -1.9 524,662 + Echvi_0477 0.88 +0.6 524,667 - Echvi_0477 0.88 -0.3 524,683 + Echvi_0477 0.89 +0.3 524,683 + Echvi_0477 0.89 -2.7 524,696 + Echvi_0477 0.90 +0.2 524,696 + Echvi_0477 0.90 +0.8 524,697 - Echvi_0477 0.90 +0.2 524,697 - Echvi_0477 0.90 -0.1 524,766 + +0.2 524,766 + +1.0 524,766 + -0.3 524,770 + -1.9 524,770 + -1.7 524,770 + +1.7 524,771 - +0.7 524,771 - +0.9 524,771 - +0.5 524,771 - +0.7 524,771 - -1.4 524,833 - +1.1 524,837 - +1.7 524,837 - -0.3 524,837 - -0.6 524,880 - -3.0 524,899 - -0.7 524,903 - -0.9 524,918 + -1.3 524,918 + -0.1 524,922 + +0.1 524,922 + -0.2 524,922 + -1.2 525,060 + -0.7 525,060 + +1.0 525,162 + Echvi_0478 0.11 +1.1 525,162 + Echvi_0478 0.11 +0.6 525,243 + Echvi_0478 0.15 -1.8 525,244 - Echvi_0478 0.15 -1.2 525,400 + Echvi_0478 0.23 -0.0 525,400 + Echvi_0478 0.23 -1.3 525,400 + Echvi_0478 0.23 +0.5 525,400 + Echvi_0478 0.23 -0.5 525,498 - Echvi_0478 0.28 -0.6 525,563 + Echvi_0478 0.32 +1.1 525,676 + Echvi_0478 0.38 -1.2 525,677 - Echvi_0478 0.38 -1.0 525,783 + Echvi_0478 0.43 -0.0 525,783 + Echvi_0478 0.43 +2.7 525,784 - Echvi_0478 0.43 -0.3 525,784 - Echvi_0478 0.43 -1.1 525,784 - Echvi_0478 0.43 +0.3 525,793 + Echvi_0478 0.44 -2.0 525,793 + Echvi_0478 0.44 -0.8 525,794 - Echvi_0478 0.44 -2.1 525,850 + Echvi_0478 0.47 +0.7 525,850 + Echvi_0478 0.47 +0.3 525,850 + Echvi_0478 0.47 -0.5 525,850 + Echvi_0478 0.47 -1.6 525,858 - Echvi_0478 0.47 -1.2 525,858 - Echvi_0478 0.47 -2.6 525,858 - Echvi_0478 0.47 -0.2 525,875 + Echvi_0478 0.48 -1.6 525,960 + Echvi_0478 0.53 -0.8 526,024 + Echvi_0478 0.56 +0.7 526,025 - Echvi_0478 0.56 +0.1 526,071 + Echvi_0478 0.58 -1.6 526,071 + Echvi_0478 0.58 -0.4 526,213 - Echvi_0478 0.66 -1.0 526,267 - Echvi_0478 0.69 +0.1 526,267 - Echvi_0478 0.69 -1.0 526,296 + Echvi_0478 0.70 -0.4 526,302 + Echvi_0478 0.70 +1.0 526,374 + Echvi_0478 0.74 +1.1 526,403 + Echvi_0478 0.76 +1.0 526,413 + Echvi_0478 0.76 -2.6 526,413 + Echvi_0478 0.76 -2.1 526,414 - Echvi_0478 0.76 -2.1 526,419 - Echvi_0478 0.77 +0.5 526,443 + Echvi_0478 0.78 -0.8 526,443 + Echvi_0478 0.78 +0.6 526,491 + Echvi_0478 0.80 +1.7 526,508 + Echvi_0478 0.81 +1.3 526,508 + Echvi_0478 0.81 +0.4 526,509 - Echvi_0478 0.81 +0.0 526,509 - Echvi_0478 0.81 -0.6 526,510 + Echvi_0478 0.81 -1.4 526,510 + Echvi_0478 0.81 +0.8 526,511 - Echvi_0478 0.81 +0.7 526,511 - Echvi_0478 0.81 -0.9 526,511 - Echvi_0478 0.81 -0.9 526,511 - Echvi_0478 0.81 +0.8 526,511 - Echvi_0478 0.81 -1.2 526,511 - Echvi_0478 0.81 +2.1 526,511 - Echvi_0478 0.81 -1.0 526,511 - Echvi_0478 0.81 -2.2 526,532 + Echvi_0478 0.83 +1.2 526,532 + Echvi_0478 0.83 +0.4 526,854 + +0.2 526,914 + +0.3 526,914 + +0.1 526,914 + +0.1 526,954 + +3.3 526,997 + -0.5 527,055 - -0.1 527,055 - +0.0 527,055 - +0.9 527,072 - -0.6 527,140 + -0.3 527,141 - +1.0 527,217 - -0.1 527,217 - -0.8 527,348 + Echvi_0479 0.16 -2.4 527,348 + Echvi_0479 0.16 -1.9 527,349 - Echvi_0479 0.16 +0.5 527,349 - Echvi_0479 0.16 +0.1 527,393 + Echvi_0479 0.20 +2.0 527,393 + Echvi_0479 0.20 -0.1 527,394 - Echvi_0479 0.20 +1.1 527,394 - Echvi_0479 0.20 -0.5 527,419 - Echvi_0479 0.23 -0.7 527,477 + Echvi_0479 0.28 -0.7 527,478 - Echvi_0479 0.28 -2.0 527,482 + Echvi_0479 0.29 +0.8 527,545 - Echvi_0479 0.34 -1.8 527,545 - Echvi_0479 0.34 -1.6 527,545 - Echvi_0479 0.34 -0.9 527,547 - Echvi_0479 0.35 -0.6 527,715 + Echvi_0479 0.50 +1.9 527,715 + Echvi_0479 0.50 +0.1 527,715 + Echvi_0479 0.50 +0.7 527,716 - Echvi_0479 0.50 -0.4 527,793 - Echvi_0479 0.57 +0.5 527,808 + Echvi_0479 0.59 -1.7 527,809 - Echvi_0479 0.59 -3.1 527,809 - Echvi_0479 0.59 -0.6 527,810 + Echvi_0479 0.59 +1.5 527,810 + Echvi_0479 0.59 +0.7 527,815 - Echvi_0479 0.59 -0.0
Or see this region's nucleotide sequence