Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0469 and Echvi_0470 are separated by 451 nucleotides Echvi_0470 and Echvi_0471 overlap by 4 nucleotides Echvi_0471 and Echvi_0472 are separated by 331 nucleotides
Echvi_0469: Echvi_0469 - TonB-linked outer membrane protein, SusC/RagA family, at 514,799 to 517,885
_0469
Echvi_0470: Echvi_0470 - beta-ketoacyl-acyl-carrier-protein synthase II, at 518,337 to 519,581
_0470
Echvi_0471: Echvi_0471 - Bacterial regulatory proteins, tetR family., at 519,578 to 520,138
_0471
Echvi_0472: Echvi_0472 - hypothetical protein, at 520,470 to 520,688
_0472
Position (kb) 518
519
520 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 517.342 kb on + strand, within Echvi_0469 at 517.350 kb on - strand, within Echvi_0469 at 517.370 kb on + strand, within Echvi_0469 at 517.387 kb on + strand, within Echvi_0469 at 517.387 kb on + strand, within Echvi_0469 at 517.387 kb on + strand, within Echvi_0469 at 517.405 kb on + strand, within Echvi_0469 at 517.442 kb on - strand, within Echvi_0469 at 517.520 kb on - strand, within Echvi_0469 at 517.523 kb on + strand, within Echvi_0469 at 517.523 kb on + strand, within Echvi_0469 at 517.524 kb on - strand, within Echvi_0469 at 517.625 kb on + strand at 517.708 kb on + strand at 517.708 kb on + strand at 517.709 kb on - strand at 517.753 kb on + strand at 517.754 kb on - strand at 517.852 kb on - strand at 517.852 kb on - strand at 517.885 kb on + strand at 517.944 kb on + strand at 517.945 kb on - strand at 517.945 kb on - strand at 517.961 kb on - strand at 517.967 kb on + strand at 517.967 kb on + strand at 517.968 kb on - strand at 517.969 kb on + strand at 517.969 kb on + strand at 517.969 kb on + strand at 517.969 kb on + strand at 517.969 kb on + strand at 517.969 kb on + strand at 517.970 kb on - strand at 517.985 kb on + strand at 517.986 kb on - strand at 517.991 kb on + strand at 517.991 kb on + strand at 517.992 kb on - strand at 517.992 kb on - strand at 517.996 kb on + strand at 518.004 kb on + strand at 518.004 kb on + strand at 518.005 kb on - strand at 518.011 kb on + strand at 518.012 kb on - strand at 518.041 kb on + strand at 518.059 kb on + strand at 518.101 kb on - strand at 518.162 kb on + strand at 518.192 kb on + strand at 518.193 kb on - strand at 518.215 kb on + strand at 518.215 kb on + strand at 518.215 kb on + strand at 518.216 kb on - strand at 518.281 kb on - strand at 518.326 kb on - strand at 518.326 kb on - strand at 518.326 kb on - strand at 518.339 kb on - strand at 518.348 kb on - strand at 518.372 kb on + strand at 518.373 kb on - strand at 518.373 kb on - strand at 518.412 kb on + strand at 518.459 kb on + strand at 518.460 kb on - strand at 518.480 kb on + strand, within Echvi_0470 at 518.486 kb on + strand, within Echvi_0470 at 518.487 kb on - strand, within Echvi_0470 at 518.522 kb on + strand, within Echvi_0470 at 518.525 kb on + strand, within Echvi_0470 at 518.525 kb on + strand, within Echvi_0470 at 518.604 kb on - strand, within Echvi_0470 at 518.622 kb on - strand, within Echvi_0470 at 518.669 kb on + strand, within Echvi_0470 at 518.670 kb on - strand, within Echvi_0470 at 518.678 kb on + strand, within Echvi_0470 at 518.678 kb on + strand, within Echvi_0470 at 518.685 kb on - strand, within Echvi_0470 at 518.686 kb on + strand, within Echvi_0470 at 518.686 kb on + strand, within Echvi_0470 at 518.686 kb on + strand, within Echvi_0470 at 518.686 kb on + strand, within Echvi_0470 at 518.686 kb on + strand, within Echvi_0470 at 518.687 kb on - strand, within Echvi_0470 at 518.743 kb on + strand, within Echvi_0470 at 518.743 kb on + strand, within Echvi_0470 at 518.744 kb on - strand, within Echvi_0470 at 518.744 kb on - strand, within Echvi_0470 at 518.744 kb on - strand, within Echvi_0470 at 518.782 kb on + strand, within Echvi_0470 at 518.811 kb on + strand, within Echvi_0470 at 519.024 kb on - strand, within Echvi_0470 at 519.054 kb on - strand, within Echvi_0470 at 519.134 kb on - strand, within Echvi_0470 at 519.206 kb on + strand, within Echvi_0470 at 519.206 kb on + strand, within Echvi_0470 at 519.207 kb on - strand, within Echvi_0470 at 519.223 kb on + strand, within Echvi_0470 at 519.224 kb on - strand, within Echvi_0470 at 519.359 kb on - strand, within Echvi_0470 at 519.359 kb on - strand, within Echvi_0470 at 519.359 kb on - strand, within Echvi_0470 at 519.426 kb on + strand, within Echvi_0470 at 519.504 kb on + strand at 519.525 kb on + strand at 519.525 kb on + strand at 519.525 kb on + strand at 519.525 kb on + strand at 519.570 kb on + strand at 519.581 kb on + strand at 519.582 kb on - strand at 519.589 kb on + strand at 519.596 kb on + strand at 519.608 kb on - strand at 519.725 kb on - strand, within Echvi_0471 at 519.887 kb on - strand, within Echvi_0471 at 519.888 kb on + strand, within Echvi_0471 at 519.888 kb on + strand, within Echvi_0471 at 519.888 kb on + strand, within Echvi_0471 at 519.889 kb on - strand, within Echvi_0471 at 519.889 kb on - strand, within Echvi_0471 at 519.889 kb on - strand, within Echvi_0471 at 519.889 kb on - strand, within Echvi_0471 at 519.903 kb on - strand, within Echvi_0471 at 519.909 kb on - strand, within Echvi_0471 at 519.909 kb on - strand, within Echvi_0471 at 520.017 kb on + strand, within Echvi_0471 at 520.022 kb on + strand, within Echvi_0471 at 520.022 kb on + strand, within Echvi_0471 at 520.022 kb on + strand, within Echvi_0471 at 520.023 kb on - strand, within Echvi_0471 at 520.023 kb on - strand, within Echvi_0471 at 520.078 kb on + strand, within Echvi_0471 at 520.078 kb on + strand, within Echvi_0471 at 520.124 kb on - strand at 520.124 kb on - strand at 520.132 kb on + strand at 520.132 kb on + strand at 520.133 kb on - strand at 520.133 kb on - strand at 520.143 kb on + strand at 520.144 kb on - strand at 520.144 kb on - strand at 520.144 kb on - strand at 520.186 kb on + strand at 520.187 kb on - strand at 520.190 kb on + strand at 520.191 kb on - strand at 520.193 kb on - strand at 520.193 kb on - strand at 520.193 kb on - strand at 520.243 kb on + strand at 520.340 kb on + strand at 520.340 kb on + strand at 520.445 kb on + strand at 520.445 kb on + strand at 520.445 kb on + strand at 520.446 kb on - strand at 520.446 kb on - strand at 520.480 kb on + strand at 520.488 kb on + strand at 520.497 kb on + strand, within Echvi_0472 at 520.499 kb on + strand, within Echvi_0472
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 517,342 + Echvi_0469 0.82 +0.6 517,350 - Echvi_0469 0.83 -0.5 517,370 + Echvi_0469 0.83 -0.5 517,387 + Echvi_0469 0.84 -0.3 517,387 + Echvi_0469 0.84 -0.8 517,387 + Echvi_0469 0.84 -0.3 517,405 + Echvi_0469 0.84 -1.4 517,442 - Echvi_0469 0.86 -1.0 517,520 - Echvi_0469 0.88 -0.1 517,523 + Echvi_0469 0.88 -2.1 517,523 + Echvi_0469 0.88 +1.2 517,524 - Echvi_0469 0.88 +0.4 517,625 + +0.2 517,708 + +1.7 517,708 + +0.8 517,709 - -0.7 517,753 + -0.8 517,754 - -1.2 517,852 - -0.4 517,852 - +0.2 517,885 + -0.8 517,944 + +0.4 517,945 - -1.7 517,945 - -1.3 517,961 - -1.7 517,967 + +1.5 517,967 + +0.4 517,968 - -0.6 517,969 + +0.8 517,969 + +1.0 517,969 + -0.7 517,969 + +1.5 517,969 + +1.2 517,969 + +1.5 517,970 - +1.0 517,985 + +1.0 517,986 - -1.7 517,991 + +0.0 517,991 + -0.9 517,992 - -1.8 517,992 - -2.0 517,996 + +1.5 518,004 + -1.3 518,004 + -0.2 518,005 - +1.0 518,011 + +0.4 518,012 - +1.0 518,041 + -1.1 518,059 + -1.7 518,101 - -1.5 518,162 + -1.4 518,192 + +0.5 518,193 - -1.4 518,215 + -0.2 518,215 + +0.9 518,215 + -0.7 518,216 - +0.7 518,281 - +1.2 518,326 - -1.8 518,326 - -1.5 518,326 - +0.2 518,339 - -2.7 518,348 - -0.3 518,372 + +1.5 518,373 - -0.7 518,373 - +1.5 518,412 + -0.9 518,459 + +0.3 518,460 - +2.3 518,480 + Echvi_0470 0.11 +1.6 518,486 + Echvi_0470 0.12 +0.5 518,487 - Echvi_0470 0.12 -0.8 518,522 + Echvi_0470 0.15 +1.7 518,525 + Echvi_0470 0.15 -0.8 518,525 + Echvi_0470 0.15 -1.8 518,604 - Echvi_0470 0.21 -0.2 518,622 - Echvi_0470 0.23 -1.6 518,669 + Echvi_0470 0.27 -0.5 518,670 - Echvi_0470 0.27 -1.3 518,678 + Echvi_0470 0.27 -0.7 518,678 + Echvi_0470 0.27 -1.5 518,685 - Echvi_0470 0.28 -0.3 518,686 + Echvi_0470 0.28 +2.0 518,686 + Echvi_0470 0.28 -1.1 518,686 + Echvi_0470 0.28 -0.8 518,686 + Echvi_0470 0.28 -2.1 518,686 + Echvi_0470 0.28 +0.8 518,687 - Echvi_0470 0.28 -1.3 518,743 + Echvi_0470 0.33 +0.2 518,743 + Echvi_0470 0.33 +0.3 518,744 - Echvi_0470 0.33 +1.0 518,744 - Echvi_0470 0.33 -1.3 518,744 - Echvi_0470 0.33 -0.7 518,782 + Echvi_0470 0.36 -1.8 518,811 + Echvi_0470 0.38 -1.1 519,024 - Echvi_0470 0.55 +0.1 519,054 - Echvi_0470 0.58 -2.8 519,134 - Echvi_0470 0.64 -0.3 519,206 + Echvi_0470 0.70 -1.3 519,206 + Echvi_0470 0.70 +0.1 519,207 - Echvi_0470 0.70 -0.4 519,223 + Echvi_0470 0.71 -0.9 519,224 - Echvi_0470 0.71 -0.8 519,359 - Echvi_0470 0.82 +1.3 519,359 - Echvi_0470 0.82 -1.9 519,359 - Echvi_0470 0.82 -0.3 519,426 + Echvi_0470 0.87 +0.9 519,504 + +0.6 519,525 + +0.1 519,525 + -0.3 519,525 + +0.3 519,525 + -0.1 519,570 + +0.2 519,581 + +0.2 519,582 - -0.0 519,589 + -2.4 519,596 + +0.5 519,608 - -0.1 519,725 - Echvi_0471 0.26 +0.4 519,887 - Echvi_0471 0.55 -1.6 519,888 + Echvi_0471 0.55 +0.6 519,888 + Echvi_0471 0.55 -0.3 519,888 + Echvi_0471 0.55 -0.9 519,889 - Echvi_0471 0.55 -0.5 519,889 - Echvi_0471 0.55 -0.9 519,889 - Echvi_0471 0.55 +0.5 519,889 - Echvi_0471 0.55 -1.5 519,903 - Echvi_0471 0.58 -1.6 519,909 - Echvi_0471 0.59 -1.3 519,909 - Echvi_0471 0.59 -2.3 520,017 + Echvi_0471 0.78 -0.6 520,022 + Echvi_0471 0.79 -1.4 520,022 + Echvi_0471 0.79 -0.3 520,022 + Echvi_0471 0.79 +0.5 520,023 - Echvi_0471 0.79 +0.7 520,023 - Echvi_0471 0.79 +0.2 520,078 + Echvi_0471 0.89 -0.6 520,078 + Echvi_0471 0.89 +0.3 520,124 - -1.1 520,124 - +0.7 520,132 + +1.3 520,132 + -1.0 520,133 - -0.1 520,133 - -2.3 520,143 + -1.0 520,144 - -2.7 520,144 - +0.2 520,144 - +0.8 520,186 + -0.2 520,187 - -0.6 520,190 + +1.9 520,191 - +0.5 520,193 - -0.0 520,193 - -1.1 520,193 - -2.8 520,243 + +2.7 520,340 + -0.4 520,340 + +1.2 520,445 + +0.2 520,445 + -1.8 520,445 + -0.6 520,446 - +1.2 520,446 - -0.9 520,480 + +0.4 520,488 + -2.1 520,497 + Echvi_0472 0.12 +0.0 520,499 + Echvi_0472 0.13 -1.6
Or see this region's nucleotide sequence