Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0347

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0345 and Echvi_0346 are separated by 81 nucleotidesEchvi_0346 and Echvi_0347 overlap by 35 nucleotidesEchvi_0347 and Echvi_0348 are separated by 104 nucleotides Echvi_0345: Echvi_0345 - hypothetical protein, at 368,043 to 368,585 _0345 Echvi_0346: Echvi_0346 - Predicted acyltransferase, at 368,667 to 369,107 _0346 Echvi_0347: Echvi_0347 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 369,073 to 370,065 _0347 Echvi_0348: Echvi_0348 - Uncharacterized conserved protein, at 370,170 to 370,949 _0348 Position (kb) 369 370 371Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 368.077 kb on - strandat 368.133 kb on + strand, within Echvi_0345at 368.133 kb on + strand, within Echvi_0345at 368.134 kb on - strand, within Echvi_0345at 368.177 kb on - strand, within Echvi_0345at 368.270 kb on + strand, within Echvi_0345at 368.270 kb on + strand, within Echvi_0345at 368.271 kb on - strand, within Echvi_0345at 368.271 kb on - strand, within Echvi_0345at 368.287 kb on + strand, within Echvi_0345at 368.287 kb on + strand, within Echvi_0345at 368.287 kb on + strand, within Echvi_0345at 368.287 kb on + strand, within Echvi_0345at 368.288 kb on - strand, within Echvi_0345at 368.288 kb on - strand, within Echvi_0345at 368.288 kb on - strand, within Echvi_0345at 368.288 kb on - strand, within Echvi_0345at 368.291 kb on + strand, within Echvi_0345at 368.291 kb on + strand, within Echvi_0345at 368.291 kb on + strand, within Echvi_0345at 368.291 kb on + strand, within Echvi_0345at 368.291 kb on + strand, within Echvi_0345at 368.292 kb on - strand, within Echvi_0345at 368.384 kb on + strand, within Echvi_0345at 368.483 kb on + strand, within Echvi_0345at 368.484 kb on - strand, within Echvi_0345at 368.484 kb on - strand, within Echvi_0345at 368.533 kb on + strandat 368.534 kb on - strandat 368.567 kb on + strandat 368.568 kb on - strandat 368.568 kb on - strandat 368.568 kb on - strandat 368.571 kb on + strandat 368.571 kb on + strandat 368.572 kb on - strandat 368.572 kb on - strandat 368.575 kb on - strandat 368.590 kb on + strandat 368.594 kb on + strandat 368.594 kb on + strandat 368.653 kb on + strandat 368.674 kb on + strandat 368.749 kb on + strand, within Echvi_0346at 368.750 kb on - strand, within Echvi_0346at 368.782 kb on + strand, within Echvi_0346at 368.782 kb on + strand, within Echvi_0346at 368.782 kb on + strand, within Echvi_0346at 368.782 kb on + strand, within Echvi_0346at 368.782 kb on + strand, within Echvi_0346at 368.831 kb on + strand, within Echvi_0346at 368.995 kb on + strand, within Echvi_0346at 368.996 kb on - strand, within Echvi_0346at 369.074 kb on + strandat 369.123 kb on + strandat 369.124 kb on - strandat 369.143 kb on + strandat 369.144 kb on - strandat 369.144 kb on - strandat 369.144 kb on - strandat 369.144 kb on - strandat 369.220 kb on + strand, within Echvi_0347at 369.221 kb on - strand, within Echvi_0347at 369.419 kb on + strand, within Echvi_0347at 369.420 kb on - strand, within Echvi_0347at 369.486 kb on + strand, within Echvi_0347at 369.486 kb on + strand, within Echvi_0347at 369.653 kb on + strand, within Echvi_0347at 369.653 kb on + strand, within Echvi_0347at 369.654 kb on - strand, within Echvi_0347at 369.702 kb on + strand, within Echvi_0347at 369.733 kb on - strand, within Echvi_0347at 369.827 kb on + strand, within Echvi_0347at 369.827 kb on + strand, within Echvi_0347at 369.828 kb on - strand, within Echvi_0347at 370.048 kb on - strandat 370.048 kb on - strandat 370.051 kb on + strandat 370.079 kb on - strandat 370.079 kb on - strandat 370.079 kb on - strandat 370.083 kb on - strandat 370.131 kb on + strandat 370.136 kb on + strandat 371.041 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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368,077 - +1.0
368,133 + Echvi_0345 0.17 +0.7
368,133 + Echvi_0345 0.17 +0.6
368,134 - Echvi_0345 0.17 -2.4
368,177 - Echvi_0345 0.25 -0.5
368,270 + Echvi_0345 0.42 +0.2
368,270 + Echvi_0345 0.42 +2.0
368,271 - Echvi_0345 0.42 +0.6
368,271 - Echvi_0345 0.42 -1.0
368,287 + Echvi_0345 0.45 -1.2
368,287 + Echvi_0345 0.45 +0.5
368,287 + Echvi_0345 0.45 +0.3
368,287 + Echvi_0345 0.45 +1.0
368,288 - Echvi_0345 0.45 -1.2
368,288 - Echvi_0345 0.45 -0.1
368,288 - Echvi_0345 0.45 +1.6
368,288 - Echvi_0345 0.45 -0.6
368,291 + Echvi_0345 0.46 +0.0
368,291 + Echvi_0345 0.46 +0.3
368,291 + Echvi_0345 0.46 -0.8
368,291 + Echvi_0345 0.46 -0.7
368,291 + Echvi_0345 0.46 +1.5
368,292 - Echvi_0345 0.46 +0.8
368,384 + Echvi_0345 0.63 +0.8
368,483 + Echvi_0345 0.81 -0.0
368,484 - Echvi_0345 0.81 -0.8
368,484 - Echvi_0345 0.81 -0.8
368,533 + -0.9
368,534 - -1.0
368,567 + -1.3
368,568 - -0.8
368,568 - +1.0
368,568 - +0.2
368,571 + +0.4
368,571 + -0.6
368,572 - -2.6
368,572 - +1.0
368,575 - +0.5
368,590 + +1.1
368,594 + -0.5
368,594 + +0.4
368,653 + +2.2
368,674 + +2.3
368,749 + Echvi_0346 0.19 -1.4
368,750 - Echvi_0346 0.19 -1.1
368,782 + Echvi_0346 0.26 +1.8
368,782 + Echvi_0346 0.26 +0.2
368,782 + Echvi_0346 0.26 +2.3
368,782 + Echvi_0346 0.26 +0.8
368,782 + Echvi_0346 0.26 +1.2
368,831 + Echvi_0346 0.37 -2.3
368,995 + Echvi_0346 0.74 +0.2
368,996 - Echvi_0346 0.75 +0.0
369,074 + +0.9
369,123 + -1.0
369,124 - +0.8
369,143 + +0.4
369,144 - -0.3
369,144 - +0.2
369,144 - +1.2
369,144 - +0.5
369,220 + Echvi_0347 0.15 -2.9
369,221 - Echvi_0347 0.15 -2.0
369,419 + Echvi_0347 0.35 -0.7
369,420 - Echvi_0347 0.35 -0.6
369,486 + Echvi_0347 0.42 -1.3
369,486 + Echvi_0347 0.42 +0.3
369,653 + Echvi_0347 0.58 -2.1
369,653 + Echvi_0347 0.58 -2.6
369,654 - Echvi_0347 0.59 +0.2
369,702 + Echvi_0347 0.63 -3.8
369,733 - Echvi_0347 0.66 +0.4
369,827 + Echvi_0347 0.76 -0.6
369,827 + Echvi_0347 0.76 -2.5
369,828 - Echvi_0347 0.76 -0.2
370,048 - -2.6
370,048 - -1.1
370,051 + -1.8
370,079 - -0.1
370,079 - +0.8
370,079 - -1.0
370,083 - -1.1
370,131 + -0.7
370,136 + -2.4
371,041 + +0.5

Or see this region's nucleotide sequence