Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0301

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0299 and Echvi_0300 overlap by 4 nucleotidesEchvi_0300 and Echvi_0301 are separated by 1 nucleotidesEchvi_0301 and Echvi_0302 are separated by 86 nucleotides Echvi_0299: Echvi_0299 - gliding motility-associated ABC transporter permease protein GldF, at 310,365 to 311,087 _0299 Echvi_0300: Echvi_0300 - gliding motility-associated ABC transporter ATP-binding subunit GldA, at 311,084 to 312,001 _0300 Echvi_0301: Echvi_0301 - Short-chain dehydrogenases of various substrate specificities, at 312,003 to 312,776 _0301 Echvi_0302: Echvi_0302 - amidohydrolase, at 312,863 to 314,161 _0302 Position (kb) 312 313Strain fitness (log2 ratio) -2 -1 0 1 2 3at 311.033 kb on - strandat 311.071 kb on + strandat 311.076 kb on + strandat 311.077 kb on - strandat 311.077 kb on - strandat 311.102 kb on + strandat 311.103 kb on - strandat 311.114 kb on + strandat 311.233 kb on - strand, within Echvi_0300at 311.233 kb on - strand, within Echvi_0300at 311.246 kb on + strand, within Echvi_0300at 311.246 kb on + strand, within Echvi_0300at 311.247 kb on - strand, within Echvi_0300at 311.247 kb on - strand, within Echvi_0300at 311.316 kb on + strand, within Echvi_0300at 311.317 kb on - strand, within Echvi_0300at 311.345 kb on + strand, within Echvi_0300at 311.345 kb on + strand, within Echvi_0300at 311.346 kb on - strand, within Echvi_0300at 311.437 kb on + strand, within Echvi_0300at 311.522 kb on - strand, within Echvi_0300at 311.536 kb on + strand, within Echvi_0300at 311.649 kb on - strand, within Echvi_0300at 311.651 kb on + strand, within Echvi_0300at 311.651 kb on + strand, within Echvi_0300at 311.694 kb on + strand, within Echvi_0300at 311.742 kb on + strand, within Echvi_0300at 311.752 kb on + strand, within Echvi_0300at 311.819 kb on + strand, within Echvi_0300at 311.819 kb on + strand, within Echvi_0300at 311.819 kb on + strand, within Echvi_0300at 311.881 kb on + strand, within Echvi_0300at 311.882 kb on - strand, within Echvi_0300at 311.882 kb on - strand, within Echvi_0300at 311.932 kb on + strandat 311.967 kb on + strandat 311.970 kb on + strandat 311.971 kb on - strandat 311.971 kb on - strandat 311.971 kb on - strandat 311.971 kb on - strandat 311.978 kb on + strandat 311.987 kb on + strandat 311.987 kb on + strandat 312.048 kb on + strandat 312.055 kb on + strandat 312.116 kb on + strand, within Echvi_0301at 312.117 kb on - strand, within Echvi_0301at 312.117 kb on - strand, within Echvi_0301at 312.194 kb on + strand, within Echvi_0301at 312.220 kb on + strand, within Echvi_0301at 312.221 kb on - strand, within Echvi_0301at 312.221 kb on - strand, within Echvi_0301at 312.243 kb on + strand, within Echvi_0301at 312.243 kb on + strand, within Echvi_0301at 312.244 kb on - strand, within Echvi_0301at 312.511 kb on + strand, within Echvi_0301at 312.511 kb on + strand, within Echvi_0301at 312.620 kb on + strand, within Echvi_0301at 312.651 kb on + strand, within Echvi_0301at 312.663 kb on + strand, within Echvi_0301at 312.664 kb on - strand, within Echvi_0301at 312.664 kb on - strand, within Echvi_0301at 312.675 kb on + strand, within Echvi_0301at 312.675 kb on + strand, within Echvi_0301at 312.675 kb on + strand, within Echvi_0301at 312.676 kb on - strand, within Echvi_0301at 312.676 kb on - strand, within Echvi_0301at 312.676 kb on - strand, within Echvi_0301at 312.676 kb on - strand, within Echvi_0301at 312.696 kb on + strand, within Echvi_0301at 312.696 kb on + strand, within Echvi_0301at 312.696 kb on + strand, within Echvi_0301at 312.697 kb on - strand, within Echvi_0301at 312.709 kb on - strandat 312.722 kb on + strandat 312.723 kb on - strandat 312.762 kb on + strandat 312.764 kb on + strandat 312.765 kb on - strandat 312.780 kb on - strandat 312.879 kb on + strandat 312.879 kb on + strandat 312.879 kb on + strandat 312.880 kb on - strandat 312.880 kb on - strandat 312.892 kb on + strandat 313.060 kb on - strand, within Echvi_0302at 313.119 kb on + strand, within Echvi_0302at 313.493 kb on - strand, within Echvi_0302at 313.493 kb on - strand, within Echvi_0302at 313.493 kb on - strand, within Echvi_0302at 313.493 kb on - strand, within Echvi_0302at 313.642 kb on + strand, within Echvi_0302at 313.704 kb on + strand, within Echvi_0302at 313.705 kb on - strand, within Echvi_0302at 313.757 kb on + strand, within Echvi_0302

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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311,033 - +2.3
311,071 + +1.7
311,076 + +1.7
311,077 - -0.6
311,077 - +0.9
311,102 + +1.7
311,103 - +0.7
311,114 + +1.5
311,233 - Echvi_0300 0.16 +2.1
311,233 - Echvi_0300 0.16 +2.5
311,246 + Echvi_0300 0.18 +1.7
311,246 + Echvi_0300 0.18 +1.8
311,247 - Echvi_0300 0.18 +1.4
311,247 - Echvi_0300 0.18 +1.4
311,316 + Echvi_0300 0.25 +1.2
311,317 - Echvi_0300 0.25 +1.8
311,345 + Echvi_0300 0.28 +1.6
311,345 + Echvi_0300 0.28 +1.3
311,346 - Echvi_0300 0.29 +2.2
311,437 + Echvi_0300 0.38 +1.7
311,522 - Echvi_0300 0.48 +2.0
311,536 + Echvi_0300 0.49 +2.0
311,649 - Echvi_0300 0.62 +1.3
311,651 + Echvi_0300 0.62 +2.0
311,651 + Echvi_0300 0.62 +2.0
311,694 + Echvi_0300 0.66 +1.7
311,742 + Echvi_0300 0.72 +1.3
311,752 + Echvi_0300 0.73 +1.0
311,819 + Echvi_0300 0.80 +1.8
311,819 + Echvi_0300 0.80 +3.2
311,819 + Echvi_0300 0.80 +2.4
311,881 + Echvi_0300 0.87 +2.1
311,882 - Echvi_0300 0.87 +2.3
311,882 - Echvi_0300 0.87 +2.1
311,932 + +1.9
311,967 + +2.0
311,970 + +1.8
311,971 - +1.8
311,971 - +0.4
311,971 - +1.2
311,971 - +2.0
311,978 + +1.9
311,987 + +1.8
311,987 + +1.5
312,048 + +0.8
312,055 + -0.7
312,116 + Echvi_0301 0.15 -0.8
312,117 - Echvi_0301 0.15 -0.0
312,117 - Echvi_0301 0.15 +1.4
312,194 + Echvi_0301 0.25 +0.4
312,220 + Echvi_0301 0.28 +0.8
312,221 - Echvi_0301 0.28 -1.4
312,221 - Echvi_0301 0.28 -1.5
312,243 + Echvi_0301 0.31 +1.6
312,243 + Echvi_0301 0.31 -0.0
312,244 - Echvi_0301 0.31 -0.4
312,511 + Echvi_0301 0.66 +1.2
312,511 + Echvi_0301 0.66 +0.3
312,620 + Echvi_0301 0.80 +1.0
312,651 + Echvi_0301 0.84 +0.0
312,663 + Echvi_0301 0.85 +0.1
312,664 - Echvi_0301 0.85 +0.5
312,664 - Echvi_0301 0.85 +0.0
312,675 + Echvi_0301 0.87 +1.5
312,675 + Echvi_0301 0.87 -0.4
312,675 + Echvi_0301 0.87 +1.0
312,676 - Echvi_0301 0.87 -0.8
312,676 - Echvi_0301 0.87 +0.6
312,676 - Echvi_0301 0.87 +0.4
312,676 - Echvi_0301 0.87 +0.7
312,696 + Echvi_0301 0.90 +0.4
312,696 + Echvi_0301 0.90 +0.2
312,696 + Echvi_0301 0.90 +1.2
312,697 - Echvi_0301 0.90 -0.7
312,709 - +0.7
312,722 + +0.6
312,723 - -2.2
312,762 + +1.3
312,764 + -0.5
312,765 - +0.5
312,780 - -0.0
312,879 + +0.2
312,879 + +0.5
312,879 + +0.2
312,880 - -0.9
312,880 - +0.7
312,892 + +0.3
313,060 - Echvi_0302 0.15 -0.4
313,119 + Echvi_0302 0.20 -0.8
313,493 - Echvi_0302 0.48 -0.0
313,493 - Echvi_0302 0.48 -0.6
313,493 - Echvi_0302 0.48 +0.6
313,493 - Echvi_0302 0.48 +0.6
313,642 + Echvi_0302 0.60 +0.3
313,704 + Echvi_0302 0.65 -2.3
313,705 - Echvi_0302 0.65 +0.5
313,757 + Echvi_0302 0.69 -0.3

Or see this region's nucleotide sequence