Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0193

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0192 and Echvi_0193 are separated by 374 nucleotidesEchvi_0193 and Echvi_0194 are separated by 57 nucleotidesEchvi_0194 and Echvi_0195 are separated by 65 nucleotides Echvi_0192: Echvi_0192 - hypothetical protein, at 209,175 to 209,792 _0192 Echvi_0193: Echvi_0193 - NAD dependent epimerase/dehydratase family., at 210,167 to 211,129 _0193 Echvi_0194: Echvi_0194 - Protein of unknown function (DUF3109)., at 211,187 to 211,837 _0194 Echvi_0195: Echvi_0195 - RNA, at 211,903 to 212,222 _0195 Position (kb) 210 211 212Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 209.176 kb on + strandat 209.224 kb on + strandat 209.251 kb on + strand, within Echvi_0192at 209.252 kb on - strand, within Echvi_0192at 209.274 kb on - strand, within Echvi_0192at 209.274 kb on - strand, within Echvi_0192at 209.287 kb on - strand, within Echvi_0192at 209.294 kb on + strand, within Echvi_0192at 209.344 kb on + strand, within Echvi_0192at 209.383 kb on + strand, within Echvi_0192at 209.390 kb on + strand, within Echvi_0192at 209.400 kb on + strand, within Echvi_0192at 209.400 kb on + strand, within Echvi_0192at 209.401 kb on - strand, within Echvi_0192at 209.412 kb on + strand, within Echvi_0192at 209.418 kb on - strand, within Echvi_0192at 209.448 kb on + strand, within Echvi_0192at 209.528 kb on - strand, within Echvi_0192at 209.594 kb on + strand, within Echvi_0192at 209.637 kb on - strand, within Echvi_0192at 209.640 kb on + strand, within Echvi_0192at 209.640 kb on + strand, within Echvi_0192at 209.640 kb on + strand, within Echvi_0192at 209.731 kb on - strandat 209.772 kb on - strandat 209.778 kb on - strandat 209.778 kb on - strandat 209.932 kb on + strandat 209.956 kb on + strandat 210.025 kb on + strandat 210.026 kb on - strandat 210.026 kb on - strandat 210.026 kb on - strandat 210.031 kb on + strandat 210.108 kb on + strandat 210.118 kb on - strandat 210.119 kb on + strandat 210.127 kb on + strandat 210.133 kb on - strandat 210.152 kb on - strandat 210.230 kb on + strandat 210.230 kb on + strandat 210.231 kb on - strandat 210.245 kb on - strandat 210.349 kb on + strand, within Echvi_0193at 210.349 kb on + strand, within Echvi_0193at 210.350 kb on - strand, within Echvi_0193at 210.366 kb on + strand, within Echvi_0193at 210.377 kb on + strand, within Echvi_0193at 210.377 kb on + strand, within Echvi_0193at 210.377 kb on + strand, within Echvi_0193at 210.377 kb on + strand, within Echvi_0193at 210.378 kb on - strand, within Echvi_0193at 210.476 kb on - strand, within Echvi_0193at 210.476 kb on - strand, within Echvi_0193at 210.476 kb on - strand, within Echvi_0193at 210.476 kb on - strand, within Echvi_0193at 210.477 kb on + strand, within Echvi_0193at 210.477 kb on + strand, within Echvi_0193at 210.477 kb on + strand, within Echvi_0193at 210.477 kb on + strand, within Echvi_0193at 210.477 kb on + strand, within Echvi_0193at 210.477 kb on + strand, within Echvi_0193at 210.478 kb on - strand, within Echvi_0193at 210.478 kb on - strand, within Echvi_0193at 210.478 kb on - strand, within Echvi_0193at 210.478 kb on - strand, within Echvi_0193at 210.479 kb on + strand, within Echvi_0193at 210.479 kb on + strand, within Echvi_0193at 210.479 kb on + strand, within Echvi_0193at 210.479 kb on + strand, within Echvi_0193at 210.479 kb on + strand, within Echvi_0193at 210.479 kb on + strand, within Echvi_0193at 210.480 kb on - strand, within Echvi_0193at 210.480 kb on - strand, within Echvi_0193at 210.480 kb on - strand, within Echvi_0193at 210.480 kb on - strandat 210.480 kb on - strand, within Echvi_0193at 210.485 kb on + strand, within Echvi_0193at 210.485 kb on + strand, within Echvi_0193at 210.485 kb on + strand, within Echvi_0193at 210.485 kb on + strand, within Echvi_0193at 210.486 kb on - strand, within Echvi_0193at 210.486 kb on - strand, within Echvi_0193at 210.486 kb on - strand, within Echvi_0193at 210.497 kb on + strand, within Echvi_0193at 210.497 kb on + strand, within Echvi_0193at 210.497 kb on + strand, within Echvi_0193at 210.497 kb on + strand, within Echvi_0193at 210.497 kb on + strand, within Echvi_0193at 210.497 kb on + strand, within Echvi_0193at 210.498 kb on - strand, within Echvi_0193at 210.498 kb on - strand, within Echvi_0193at 210.498 kb on - strand, within Echvi_0193at 210.508 kb on + strand, within Echvi_0193at 210.508 kb on + strand, within Echvi_0193at 210.508 kb on + strand, within Echvi_0193at 210.509 kb on - strand, within Echvi_0193at 210.509 kb on - strand, within Echvi_0193at 210.520 kb on + strand, within Echvi_0193at 210.592 kb on + strandat 210.593 kb on - strand, within Echvi_0193at 210.593 kb on - strand, within Echvi_0193at 210.639 kb on - strand, within Echvi_0193at 210.649 kb on + strand, within Echvi_0193at 210.649 kb on + strand, within Echvi_0193at 210.650 kb on - strand, within Echvi_0193at 210.650 kb on - strand, within Echvi_0193at 210.650 kb on - strand, within Echvi_0193at 210.669 kb on + strand, within Echvi_0193at 210.669 kb on + strand, within Echvi_0193at 210.670 kb on - strand, within Echvi_0193at 210.754 kb on + strand, within Echvi_0193at 210.806 kb on + strand, within Echvi_0193at 210.806 kb on + strand, within Echvi_0193at 210.806 kb on + strand, within Echvi_0193at 210.807 kb on - strand, within Echvi_0193at 210.807 kb on - strand, within Echvi_0193at 210.866 kb on + strand, within Echvi_0193at 210.902 kb on + strand, within Echvi_0193at 210.980 kb on + strand, within Echvi_0193at 210.987 kb on - strand, within Echvi_0193at 210.987 kb on - strand, within Echvi_0193at 210.998 kb on + strand, within Echvi_0193at 210.998 kb on + strand, within Echvi_0193at 210.999 kb on - strand, within Echvi_0193at 211.117 kb on + strandat 211.119 kb on + strandat 211.119 kb on + strandat 211.120 kb on - strandat 211.120 kb on - strandat 211.142 kb on - strandat 211.159 kb on + strandat 211.160 kb on - strandat 211.178 kb on - strandat 211.184 kb on + strandat 211.273 kb on + strand, within Echvi_0194at 211.379 kb on + strand, within Echvi_0194at 211.379 kb on + strand, within Echvi_0194at 211.379 kb on + strand, within Echvi_0194at 211.380 kb on - strand, within Echvi_0194at 211.380 kb on - strand, within Echvi_0194at 211.380 kb on - strand, within Echvi_0194at 211.380 kb on - strand, within Echvi_0194at 211.391 kb on + strand, within Echvi_0194at 211.409 kb on + strand, within Echvi_0194at 211.476 kb on + strand, within Echvi_0194at 211.502 kb on - strand, within Echvi_0194at 211.540 kb on + strand, within Echvi_0194at 211.553 kb on + strand, within Echvi_0194at 211.554 kb on - strand, within Echvi_0194at 211.581 kb on + strand, within Echvi_0194at 211.582 kb on - strand, within Echvi_0194at 211.594 kb on + strand, within Echvi_0194at 211.740 kb on - strand, within Echvi_0194at 211.742 kb on + strand, within Echvi_0194at 211.742 kb on + strand, within Echvi_0194at 211.743 kb on - strandat 211.743 kb on - strand, within Echvi_0194at 211.743 kb on - strand, within Echvi_0194at 211.743 kb on - strand, within Echvi_0194at 211.743 kb on - strand, within Echvi_0194at 211.745 kb on + strand, within Echvi_0194at 211.750 kb on + strand, within Echvi_0194at 211.751 kb on - strand, within Echvi_0194at 211.751 kb on - strand, within Echvi_0194at 211.751 kb on - strand, within Echvi_0194at 211.770 kb on - strand, within Echvi_0194at 211.843 kb on + strandat 211.843 kb on + strandat 211.843 kb on + strandat 211.845 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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209,176 + +2.3
209,224 + +0.6
209,251 + Echvi_0192 0.12 -0.6
209,252 - Echvi_0192 0.12 -0.9
209,274 - Echvi_0192 0.16 -1.3
209,274 - Echvi_0192 0.16 -2.6
209,287 - Echvi_0192 0.18 -0.2
209,294 + Echvi_0192 0.19 -0.2
209,344 + Echvi_0192 0.27 -0.3
209,383 + Echvi_0192 0.34 -0.7
209,390 + Echvi_0192 0.35 +2.3
209,400 + Echvi_0192 0.36 -0.9
209,400 + Echvi_0192 0.36 +0.0
209,401 - Echvi_0192 0.37 -2.7
209,412 + Echvi_0192 0.38 +0.5
209,418 - Echvi_0192 0.39 +1.3
209,448 + Echvi_0192 0.44 -0.8
209,528 - Echvi_0192 0.57 -1.4
209,594 + Echvi_0192 0.68 -2.1
209,637 - Echvi_0192 0.75 +2.7
209,640 + Echvi_0192 0.75 +0.1
209,640 + Echvi_0192 0.75 -0.8
209,640 + Echvi_0192 0.75 -0.8
209,731 - -2.6
209,772 - +1.2
209,778 - +0.6
209,778 - +0.8
209,932 + -0.5
209,956 + -0.4
210,025 + +1.0
210,026 - -0.1
210,026 - -0.8
210,026 - -1.4
210,031 + +0.5
210,108 + -3.1
210,118 - -0.8
210,119 + -0.4
210,127 + -0.8
210,133 - +0.2
210,152 - +1.2
210,230 + -0.7
210,230 + +0.2
210,231 - -0.4
210,245 - +0.4
210,349 + Echvi_0193 0.19 +0.4
210,349 + Echvi_0193 0.19 -0.7
210,350 - Echvi_0193 0.19 -0.3
210,366 + Echvi_0193 0.21 +1.5
210,377 + Echvi_0193 0.22 +1.3
210,377 + Echvi_0193 0.22 -1.0
210,377 + Echvi_0193 0.22 +0.8
210,377 + Echvi_0193 0.22 +0.2
210,378 - Echvi_0193 0.22 -0.8
210,476 - Echvi_0193 0.32 +1.4
210,476 - Echvi_0193 0.32 -1.1
210,476 - Echvi_0193 0.32 -2.4
210,476 - Echvi_0193 0.32 -0.1
210,477 + Echvi_0193 0.32 -0.1
210,477 + Echvi_0193 0.32 -0.6
210,477 + Echvi_0193 0.32 +0.9
210,477 + Echvi_0193 0.32 -0.6
210,477 + Echvi_0193 0.32 +0.4
210,477 + Echvi_0193 0.32 -0.7
210,478 - Echvi_0193 0.32 +1.1
210,478 - Echvi_0193 0.32 -0.9
210,478 - Echvi_0193 0.32 +0.7
210,478 - Echvi_0193 0.32 -0.4
210,479 + Echvi_0193 0.32 -0.1
210,479 + Echvi_0193 0.32 -0.9
210,479 + Echvi_0193 0.32 -0.2
210,479 + Echvi_0193 0.32 -0.4
210,479 + Echvi_0193 0.32 -2.8
210,479 + Echvi_0193 0.32 +1.0
210,480 - Echvi_0193 0.33 -0.6
210,480 - Echvi_0193 0.33 -0.3
210,480 - Echvi_0193 0.33 -0.8
210,480 - +1.7
210,480 - Echvi_0193 0.33 -0.3
210,485 + Echvi_0193 0.33 +0.3
210,485 + Echvi_0193 0.33 +0.6
210,485 + Echvi_0193 0.33 -1.4
210,485 + Echvi_0193 0.33 +0.5
210,486 - Echvi_0193 0.33 -0.7
210,486 - Echvi_0193 0.33 +1.5
210,486 - Echvi_0193 0.33 +0.6
210,497 + Echvi_0193 0.34 -0.2
210,497 + Echvi_0193 0.34 -1.2
210,497 + Echvi_0193 0.34 +0.2
210,497 + Echvi_0193 0.34 +0.3
210,497 + Echvi_0193 0.34 +1.5
210,497 + Echvi_0193 0.34 -1.2
210,498 - Echvi_0193 0.34 +1.3
210,498 - Echvi_0193 0.34 -0.7
210,498 - Echvi_0193 0.34 +0.6
210,508 + Echvi_0193 0.35 -1.1
210,508 + Echvi_0193 0.35 -0.2
210,508 + Echvi_0193 0.35 -0.1
210,509 - Echvi_0193 0.36 -1.7
210,509 - Echvi_0193 0.36 +1.4
210,520 + Echvi_0193 0.37 +0.5
210,592 + +3.3
210,593 - Echvi_0193 0.44 +0.9
210,593 - Echvi_0193 0.44 -1.3
210,639 - Echvi_0193 0.49 +0.9
210,649 + Echvi_0193 0.50 -1.1
210,649 + Echvi_0193 0.50 -0.7
210,650 - Echvi_0193 0.50 +0.9
210,650 - Echvi_0193 0.50 +0.1
210,650 - Echvi_0193 0.50 -1.0
210,669 + Echvi_0193 0.52 +0.9
210,669 + Echvi_0193 0.52 +0.6
210,670 - Echvi_0193 0.52 -0.1
210,754 + Echvi_0193 0.61 -0.4
210,806 + Echvi_0193 0.66 +0.1
210,806 + Echvi_0193 0.66 +0.9
210,806 + Echvi_0193 0.66 -1.4
210,807 - Echvi_0193 0.66 -1.0
210,807 - Echvi_0193 0.66 -0.7
210,866 + Echvi_0193 0.73 +1.0
210,902 + Echvi_0193 0.76 +0.9
210,980 + Echvi_0193 0.84 -1.2
210,987 - Echvi_0193 0.85 +2.7
210,987 - Echvi_0193 0.85 -1.0
210,998 + Echvi_0193 0.86 -1.4
210,998 + Echvi_0193 0.86 +0.2
210,999 - Echvi_0193 0.86 +0.3
211,117 + -0.5
211,119 + -0.1
211,119 + +0.7
211,120 - +1.7
211,120 - +0.4
211,142 - +0.7
211,159 + +0.4
211,160 - -0.3
211,178 - -0.8
211,184 + +2.5
211,273 + Echvi_0194 0.13 +0.5
211,379 + Echvi_0194 0.29 +0.6
211,379 + Echvi_0194 0.29 +0.6
211,379 + Echvi_0194 0.29 -0.2
211,380 - Echvi_0194 0.30 +0.3
211,380 - Echvi_0194 0.30 +0.8
211,380 - Echvi_0194 0.30 -0.7
211,380 - Echvi_0194 0.30 -0.6
211,391 + Echvi_0194 0.31 -0.2
211,409 + Echvi_0194 0.34 -2.2
211,476 + Echvi_0194 0.44 +0.6
211,502 - Echvi_0194 0.48 +0.8
211,540 + Echvi_0194 0.54 +0.1
211,553 + Echvi_0194 0.56 +0.4
211,554 - Echvi_0194 0.56 +0.4
211,581 + Echvi_0194 0.61 -0.2
211,582 - Echvi_0194 0.61 -0.8
211,594 + Echvi_0194 0.63 +0.2
211,740 - Echvi_0194 0.85 -3.1
211,742 + Echvi_0194 0.85 -0.2
211,742 + Echvi_0194 0.85 -1.1
211,743 - +1.7
211,743 - Echvi_0194 0.85 -0.4
211,743 - Echvi_0194 0.85 -1.4
211,743 - Echvi_0194 0.85 -0.6
211,743 - Echvi_0194 0.85 -1.7
211,745 + Echvi_0194 0.86 -1.0
211,750 + Echvi_0194 0.86 -1.1
211,751 - Echvi_0194 0.87 -0.3
211,751 - Echvi_0194 0.87 -0.3
211,751 - Echvi_0194 0.87 -0.4
211,770 - Echvi_0194 0.90 +0.3
211,843 + -0.8
211,843 + +1.1
211,843 + +0.6
211,845 + -1.6

Or see this region's nucleotide sequence