Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0165 and Echvi_0166 are separated by 100 nucleotides Echvi_0166 and Echvi_0167 are separated by 17 nucleotides
Echvi_0165: Echvi_0165 - KpsF/GutQ family protein, at 168,377 to 169,345
_0165
Echvi_0166: Echvi_0166 - ATP-dependent DNA helicase RecQ, at 169,446 to 171,623
_0166
Echvi_0167: Echvi_0167 - phosphoribosylamine--glycine ligase, at 171,641 to 172,933
_0167
Position (kb) 169
170
171
172 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 168.463 kb on + strand at 168.528 kb on - strand, within Echvi_0165 at 168.528 kb on - strand, within Echvi_0165 at 168.528 kb on - strand, within Echvi_0165 at 168.560 kb on + strand, within Echvi_0165 at 168.680 kb on + strand, within Echvi_0165 at 168.680 kb on + strand, within Echvi_0165 at 168.958 kb on + strand, within Echvi_0165 at 168.964 kb on + strand, within Echvi_0165 at 168.965 kb on - strand, within Echvi_0165 at 168.967 kb on + strand, within Echvi_0165 at 168.967 kb on + strand, within Echvi_0165 at 168.967 kb on + strand, within Echvi_0165 at 168.972 kb on - strand, within Echvi_0165 at 169.037 kb on - strand, within Echvi_0165 at 169.061 kb on + strand, within Echvi_0165 at 169.088 kb on + strand, within Echvi_0165 at 169.088 kb on + strand, within Echvi_0165 at 169.088 kb on + strand, within Echvi_0165 at 169.088 kb on + strand, within Echvi_0165 at 169.089 kb on - strand, within Echvi_0165 at 169.103 kb on - strand, within Echvi_0165 at 169.310 kb on - strand at 170.036 kb on + strand, within Echvi_0166 at 170.776 kb on - strand at 171.233 kb on - strand, within Echvi_0166 at 171.638 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 168,463 + -1.6 168,528 - Echvi_0165 0.16 -2.5 168,528 - Echvi_0165 0.16 +0.2 168,528 - Echvi_0165 0.16 -2.4 168,560 + Echvi_0165 0.19 -1.1 168,680 + Echvi_0165 0.31 -1.2 168,680 + Echvi_0165 0.31 -4.2 168,958 + Echvi_0165 0.60 -2.0 168,964 + Echvi_0165 0.61 -0.9 168,965 - Echvi_0165 0.61 -2.5 168,967 + Echvi_0165 0.61 -2.4 168,967 + Echvi_0165 0.61 -2.3 168,967 + Echvi_0165 0.61 -2.3 168,972 - Echvi_0165 0.61 -1.2 169,037 - Echvi_0165 0.68 -2.6 169,061 + Echvi_0165 0.71 -2.8 169,088 + Echvi_0165 0.73 -4.1 169,088 + Echvi_0165 0.73 +0.7 169,088 + Echvi_0165 0.73 -1.3 169,088 + Echvi_0165 0.73 -2.6 169,089 - Echvi_0165 0.73 +0.1 169,103 - Echvi_0165 0.75 +0.2 169,310 - +0.0 170,036 + Echvi_0166 0.27 +3.2 170,776 - +4.2 171,233 - Echvi_0166 0.82 +4.0 171,638 + +0.7
Or see this region's nucleotide sequence