Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0165

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0164 and Echvi_0165 are separated by 8 nucleotidesEchvi_0165 and Echvi_0166 are separated by 100 nucleotides Echvi_0164: Echvi_0164 - Mannose-1-phosphate guanylyltransferase, at 167,298 to 168,368 _0164 Echvi_0165: Echvi_0165 - KpsF/GutQ family protein, at 168,377 to 169,345 _0165 Echvi_0166: Echvi_0166 - ATP-dependent DNA helicase RecQ, at 169,446 to 171,623 _0166 Position (kb) 168 169 170Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 167.412 kb on - strand, within Echvi_0164at 167.456 kb on + strand, within Echvi_0164at 167.456 kb on + strand, within Echvi_0164at 167.457 kb on - strand, within Echvi_0164at 167.457 kb on - strand, within Echvi_0164at 167.457 kb on - strand, within Echvi_0164at 167.458 kb on + strand, within Echvi_0164at 167.458 kb on + strand, within Echvi_0164at 167.458 kb on + strand, within Echvi_0164at 167.458 kb on + strand, within Echvi_0164at 167.459 kb on - strand, within Echvi_0164at 167.459 kb on - strand, within Echvi_0164at 167.459 kb on - strand, within Echvi_0164at 167.459 kb on - strand, within Echvi_0164at 167.462 kb on + strand, within Echvi_0164at 167.463 kb on - strand, within Echvi_0164at 167.463 kb on - strand, within Echvi_0164at 167.468 kb on + strand, within Echvi_0164at 167.468 kb on + strand, within Echvi_0164at 167.468 kb on + strand, within Echvi_0164at 167.469 kb on - strand, within Echvi_0164at 167.472 kb on - strand, within Echvi_0164at 167.476 kb on + strand, within Echvi_0164at 167.504 kb on + strand, within Echvi_0164at 167.505 kb on - strand, within Echvi_0164at 167.506 kb on - strand, within Echvi_0164at 167.537 kb on + strand, within Echvi_0164at 167.538 kb on - strand, within Echvi_0164at 167.587 kb on + strand, within Echvi_0164at 167.612 kb on + strand, within Echvi_0164at 167.659 kb on - strand, within Echvi_0164at 167.686 kb on + strand, within Echvi_0164at 167.687 kb on - strand, within Echvi_0164at 167.828 kb on + strand, within Echvi_0164at 167.829 kb on - strand, within Echvi_0164at 167.829 kb on - strand, within Echvi_0164at 167.887 kb on + strand, within Echvi_0164at 167.897 kb on - strand, within Echvi_0164at 167.897 kb on - strand, within Echvi_0164at 167.902 kb on + strand, within Echvi_0164at 167.903 kb on - strand, within Echvi_0164at 167.931 kb on - strand, within Echvi_0164at 167.939 kb on + strand, within Echvi_0164at 168.010 kb on - strand, within Echvi_0164at 168.073 kb on + strand, within Echvi_0164at 168.073 kb on + strand, within Echvi_0164at 168.073 kb on + strand, within Echvi_0164at 168.073 kb on + strand, within Echvi_0164at 168.074 kb on - strand, within Echvi_0164at 168.074 kb on - strand, within Echvi_0164at 168.082 kb on + strand, within Echvi_0164at 168.082 kb on + strand, within Echvi_0164at 168.095 kb on + strand, within Echvi_0164at 168.095 kb on + strand, within Echvi_0164at 168.095 kb on + strand, within Echvi_0164at 168.095 kb on + strand, within Echvi_0164at 168.095 kb on + strand, within Echvi_0164at 168.095 kb on + strand, within Echvi_0164at 168.095 kb on + strand, within Echvi_0164at 168.095 kb on + strand, within Echvi_0164at 168.095 kb on + strand, within Echvi_0164at 168.096 kb on - strand, within Echvi_0164at 168.101 kb on + strand, within Echvi_0164at 168.101 kb on + strand, within Echvi_0164at 168.102 kb on - strand, within Echvi_0164at 168.102 kb on - strand, within Echvi_0164at 168.126 kb on + strand, within Echvi_0164at 168.126 kb on + strand, within Echvi_0164at 168.126 kb on + strand, within Echvi_0164at 168.127 kb on - strand, within Echvi_0164at 168.175 kb on + strand, within Echvi_0164at 168.175 kb on + strand, within Echvi_0164at 168.176 kb on - strand, within Echvi_0164at 168.179 kb on + strand, within Echvi_0164at 168.179 kb on + strand, within Echvi_0164at 168.179 kb on + strand, within Echvi_0164at 168.180 kb on - strand, within Echvi_0164at 168.223 kb on - strand, within Echvi_0164at 168.235 kb on + strand, within Echvi_0164at 168.235 kb on + strand, within Echvi_0164at 168.235 kb on + strand, within Echvi_0164at 168.235 kb on + strand, within Echvi_0164at 168.235 kb on + strand, within Echvi_0164at 168.236 kb on - strand, within Echvi_0164at 168.236 kb on - strand, within Echvi_0164at 168.236 kb on - strand, within Echvi_0164at 168.239 kb on + strand, within Echvi_0164at 168.270 kb on + strandat 168.305 kb on + strandat 168.305 kb on + strandat 168.306 kb on - strandat 168.306 kb on - strandat 168.306 kb on - strandat 168.350 kb on + strandat 168.350 kb on + strandat 168.350 kb on + strandat 168.350 kb on + strandat 168.350 kb on + strandat 168.350 kb on + strandat 168.350 kb on + strandat 168.350 kb on + strandat 168.350 kb on + strandat 168.351 kb on - strandat 168.351 kb on - strandat 168.351 kb on - strandat 168.351 kb on - strandat 168.351 kb on - strandat 168.351 kb on - strandat 168.351 kb on - strandat 168.352 kb on + strandat 168.352 kb on + strandat 168.352 kb on + strandat 168.353 kb on - strandat 168.353 kb on - strandat 168.353 kb on - strandat 168.353 kb on - strandat 168.463 kb on + strandat 168.528 kb on - strand, within Echvi_0165at 168.528 kb on - strand, within Echvi_0165at 168.528 kb on - strand, within Echvi_0165at 168.560 kb on + strand, within Echvi_0165at 168.680 kb on + strand, within Echvi_0165at 168.680 kb on + strand, within Echvi_0165at 168.958 kb on + strand, within Echvi_0165at 168.964 kb on + strand, within Echvi_0165at 168.965 kb on - strand, within Echvi_0165at 168.967 kb on + strand, within Echvi_0165at 168.967 kb on + strand, within Echvi_0165at 168.967 kb on + strand, within Echvi_0165at 168.972 kb on - strand, within Echvi_0165at 169.037 kb on - strand, within Echvi_0165at 169.061 kb on + strand, within Echvi_0165at 169.088 kb on + strand, within Echvi_0165at 169.088 kb on + strand, within Echvi_0165at 169.088 kb on + strand, within Echvi_0165at 169.088 kb on + strand, within Echvi_0165at 169.089 kb on - strand, within Echvi_0165at 169.103 kb on - strand, within Echvi_0165at 169.310 kb on - strandat 170.036 kb on + strand, within Echvi_0166

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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167,412 - Echvi_0164 0.11 +0.5
167,456 + Echvi_0164 0.15 +0.9
167,456 + Echvi_0164 0.15 -0.6
167,457 - Echvi_0164 0.15 +0.2
167,457 - Echvi_0164 0.15 -0.8
167,457 - Echvi_0164 0.15 -0.3
167,458 + Echvi_0164 0.15 -1.6
167,458 + Echvi_0164 0.15 +1.4
167,458 + Echvi_0164 0.15 -1.3
167,458 + Echvi_0164 0.15 +0.3
167,459 - Echvi_0164 0.15 +2.3
167,459 - Echvi_0164 0.15 -0.5
167,459 - Echvi_0164 0.15 -1.6
167,459 - Echvi_0164 0.15 +0.8
167,462 + Echvi_0164 0.15 +0.4
167,463 - Echvi_0164 0.15 -0.4
167,463 - Echvi_0164 0.15 +0.6
167,468 + Echvi_0164 0.16 +1.2
167,468 + Echvi_0164 0.16 +1.6
167,468 + Echvi_0164 0.16 -0.4
167,469 - Echvi_0164 0.16 -0.3
167,472 - Echvi_0164 0.16 -1.0
167,476 + Echvi_0164 0.17 +1.0
167,504 + Echvi_0164 0.19 +0.8
167,505 - Echvi_0164 0.19 -2.1
167,506 - Echvi_0164 0.19 -0.7
167,537 + Echvi_0164 0.22 +0.4
167,538 - Echvi_0164 0.22 +1.0
167,587 + Echvi_0164 0.27 -0.3
167,612 + Echvi_0164 0.29 -0.1
167,659 - Echvi_0164 0.34 -1.3
167,686 + Echvi_0164 0.36 +0.5
167,687 - Echvi_0164 0.36 +0.3
167,828 + Echvi_0164 0.49 -0.7
167,829 - Echvi_0164 0.50 -1.0
167,829 - Echvi_0164 0.50 -1.1
167,887 + Echvi_0164 0.55 +0.7
167,897 - Echvi_0164 0.56 +1.7
167,897 - Echvi_0164 0.56 +0.2
167,902 + Echvi_0164 0.56 +0.6
167,903 - Echvi_0164 0.56 +1.0
167,931 - Echvi_0164 0.59 +0.7
167,939 + Echvi_0164 0.60 +0.0
168,010 - Echvi_0164 0.66 -0.3
168,073 + Echvi_0164 0.72 -1.3
168,073 + Echvi_0164 0.72 -1.4
168,073 + Echvi_0164 0.72 +0.1
168,073 + Echvi_0164 0.72 -0.7
168,074 - Echvi_0164 0.72 +0.5
168,074 - Echvi_0164 0.72 +0.3
168,082 + Echvi_0164 0.73 -0.6
168,082 + Echvi_0164 0.73 -0.3
168,095 + Echvi_0164 0.74 -2.5
168,095 + Echvi_0164 0.74 -0.8
168,095 + Echvi_0164 0.74 +1.6
168,095 + Echvi_0164 0.74 +0.0
168,095 + Echvi_0164 0.74 -1.2
168,095 + Echvi_0164 0.74 -1.4
168,095 + Echvi_0164 0.74 -1.3
168,095 + Echvi_0164 0.74 -2.3
168,095 + Echvi_0164 0.74 +1.3
168,096 - Echvi_0164 0.75 -0.5
168,101 + Echvi_0164 0.75 -2.3
168,101 + Echvi_0164 0.75 -0.7
168,102 - Echvi_0164 0.75 +0.1
168,102 - Echvi_0164 0.75 +0.4
168,126 + Echvi_0164 0.77 -0.2
168,126 + Echvi_0164 0.77 +0.5
168,126 + Echvi_0164 0.77 +0.9
168,127 - Echvi_0164 0.77 -1.5
168,175 + Echvi_0164 0.82 -1.3
168,175 + Echvi_0164 0.82 +1.0
168,176 - Echvi_0164 0.82 -0.8
168,179 + Echvi_0164 0.82 -1.9
168,179 + Echvi_0164 0.82 -0.4
168,179 + Echvi_0164 0.82 -2.1
168,180 - Echvi_0164 0.82 +0.1
168,223 - Echvi_0164 0.86 +0.9
168,235 + Echvi_0164 0.87 -0.5
168,235 + Echvi_0164 0.87 -1.2
168,235 + Echvi_0164 0.87 -0.7
168,235 + Echvi_0164 0.87 -0.3
168,235 + Echvi_0164 0.87 -1.2
168,236 - Echvi_0164 0.88 -1.0
168,236 - Echvi_0164 0.88 -1.7
168,236 - Echvi_0164 0.88 +0.1
168,239 + Echvi_0164 0.88 -0.3
168,270 + -2.2
168,305 + -0.2
168,305 + +0.4
168,306 - -0.6
168,306 - -1.0
168,306 - -0.1
168,350 + -0.1
168,350 + -0.3
168,350 + -1.1
168,350 + -0.3
168,350 + -2.0
168,350 + -0.1
168,350 + +1.2
168,350 + +0.4
168,350 + -0.2
168,351 - +0.9
168,351 - +2.1
168,351 - -0.8
168,351 - +1.3
168,351 - +2.6
168,351 - +0.7
168,351 - -1.8
168,352 + +0.2
168,352 + +0.0
168,352 + -0.1
168,353 - -0.1
168,353 - +0.2
168,353 - +0.1
168,353 - +0.2
168,463 + -1.6
168,528 - Echvi_0165 0.16 -2.5
168,528 - Echvi_0165 0.16 +0.2
168,528 - Echvi_0165 0.16 -2.4
168,560 + Echvi_0165 0.19 -1.1
168,680 + Echvi_0165 0.31 -1.2
168,680 + Echvi_0165 0.31 -4.2
168,958 + Echvi_0165 0.60 -2.0
168,964 + Echvi_0165 0.61 -0.9
168,965 - Echvi_0165 0.61 -2.5
168,967 + Echvi_0165 0.61 -2.4
168,967 + Echvi_0165 0.61 -2.3
168,967 + Echvi_0165 0.61 -2.3
168,972 - Echvi_0165 0.61 -1.2
169,037 - Echvi_0165 0.68 -2.6
169,061 + Echvi_0165 0.71 -2.8
169,088 + Echvi_0165 0.73 -4.1
169,088 + Echvi_0165 0.73 +0.7
169,088 + Echvi_0165 0.73 -1.3
169,088 + Echvi_0165 0.73 -2.6
169,089 - Echvi_0165 0.73 +0.1
169,103 - Echvi_0165 0.75 +0.2
169,310 - +0.0
170,036 + Echvi_0166 0.27 +3.2

Or see this region's nucleotide sequence