Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0148

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0146 and Echvi_0147 are separated by 7 nucleotidesEchvi_0147 and Echvi_0148 are separated by 71 nucleotidesEchvi_0148 and Echvi_0149 are separated by 136 nucleotides Echvi_0146: Echvi_0146 - Nucleoside-diphosphate-sugar epimerases, at 146,600 to 147,577 _0146 Echvi_0147: Echvi_0147 - Uncharacterized lipoprotein NlpE involved in copper resistance, at 147,585 to 148,070 _0147 Echvi_0148: Echvi_0148 - transcriptional regulator, Spx/MgsR family, at 148,142 to 148,498 _0148 Echvi_0149: Echvi_0149 - Protein of unknown function (DUF3667)., at 148,635 to 149,672 _0149 Position (kb) 148 149Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 147.187 kb on + strand, within Echvi_0146at 147.187 kb on + strand, within Echvi_0146at 147.188 kb on - strand, within Echvi_0146at 147.245 kb on + strand, within Echvi_0146at 147.246 kb on - strand, within Echvi_0146at 147.246 kb on - strand, within Echvi_0146at 147.260 kb on + strand, within Echvi_0146at 147.260 kb on + strand, within Echvi_0146at 147.260 kb on + strand, within Echvi_0146at 147.261 kb on - strand, within Echvi_0146at 147.261 kb on - strand, within Echvi_0146at 147.262 kb on + strand, within Echvi_0146at 147.263 kb on - strand, within Echvi_0146at 147.263 kb on - strand, within Echvi_0146at 147.263 kb on - strand, within Echvi_0146at 147.275 kb on - strand, within Echvi_0146at 147.275 kb on - strand, within Echvi_0146at 147.284 kb on - strand, within Echvi_0146at 147.318 kb on + strand, within Echvi_0146at 147.319 kb on - strand, within Echvi_0146at 147.335 kb on + strand, within Echvi_0146at 147.335 kb on + strand, within Echvi_0146at 147.375 kb on - strand, within Echvi_0146at 147.417 kb on - strand, within Echvi_0146at 147.417 kb on - strand, within Echvi_0146at 147.418 kb on + strand, within Echvi_0146at 147.535 kb on + strandat 147.540 kb on + strandat 147.541 kb on - strandat 147.544 kb on + strandat 147.571 kb on - strandat 147.603 kb on + strandat 147.603 kb on + strandat 147.604 kb on - strandat 147.604 kb on - strandat 147.604 kb on - strandat 147.612 kb on - strandat 147.613 kb on + strandat 147.613 kb on + strandat 147.625 kb on + strandat 147.625 kb on + strandat 147.738 kb on + strand, within Echvi_0147at 147.739 kb on - strand, within Echvi_0147at 147.826 kb on - strand, within Echvi_0147at 147.891 kb on + strand, within Echvi_0147at 147.891 kb on + strand, within Echvi_0147at 147.892 kb on - strand, within Echvi_0147at 147.892 kb on - strand, within Echvi_0147at 147.892 kb on - strand, within Echvi_0147at 147.898 kb on + strand, within Echvi_0147at 147.898 kb on + strand, within Echvi_0147at 147.898 kb on + strand, within Echvi_0147at 147.904 kb on - strand, within Echvi_0147at 147.944 kb on - strand, within Echvi_0147at 147.969 kb on - strand, within Echvi_0147at 148.007 kb on + strand, within Echvi_0147at 148.033 kb on + strandat 148.200 kb on + strand, within Echvi_0148at 148.201 kb on - strand, within Echvi_0148at 148.202 kb on + strand, within Echvi_0148at 148.202 kb on + strand, within Echvi_0148at 148.203 kb on - strand, within Echvi_0148at 148.203 kb on - strand, within Echvi_0148at 148.203 kb on - strand, within Echvi_0148at 148.225 kb on + strand, within Echvi_0148at 148.226 kb on - strand, within Echvi_0148at 148.245 kb on - strand, within Echvi_0148at 148.246 kb on + strand, within Echvi_0148at 148.247 kb on - strand, within Echvi_0148at 148.294 kb on + strand, within Echvi_0148at 148.295 kb on - strand, within Echvi_0148at 148.305 kb on + strand, within Echvi_0148at 148.310 kb on - strand, within Echvi_0148at 148.394 kb on - strand, within Echvi_0148at 148.400 kb on + strand, within Echvi_0148at 148.472 kb on - strandat 148.477 kb on - strandat 148.477 kb on - strandat 148.478 kb on + strandat 148.478 kb on + strandat 148.478 kb on + strandat 148.478 kb on + strandat 148.479 kb on - strandat 148.479 kb on - strandat 148.484 kb on + strandat 148.504 kb on - strandat 148.508 kb on - strandat 148.514 kb on - strandat 148.530 kb on + strandat 148.548 kb on - strandat 148.566 kb on + strandat 148.566 kb on + strandat 148.581 kb on - strandat 148.581 kb on - strandat 148.606 kb on + strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.825 kb on + strand, within Echvi_0149at 148.829 kb on - strand, within Echvi_0149at 148.879 kb on - strand, within Echvi_0149at 148.879 kb on - strand, within Echvi_0149at 148.900 kb on - strand, within Echvi_0149at 148.921 kb on - strand, within Echvi_0149at 148.957 kb on + strand, within Echvi_0149at 148.957 kb on + strand, within Echvi_0149at 149.015 kb on + strand, within Echvi_0149at 149.070 kb on - strand, within Echvi_0149at 149.109 kb on + strand, within Echvi_0149at 149.138 kb on + strand, within Echvi_0149at 149.138 kb on + strand, within Echvi_0149at 149.160 kb on - strand, within Echvi_0149at 149.202 kb on + strand, within Echvi_0149at 149.226 kb on + strand, within Echvi_0149at 149.227 kb on - strand, within Echvi_0149at 149.245 kb on + strand, within Echvi_0149at 149.246 kb on - strand, within Echvi_0149at 149.388 kb on + strand, within Echvi_0149at 149.388 kb on + strand, within Echvi_0149at 149.392 kb on - strand, within Echvi_0149at 149.441 kb on + strand, within Echvi_0149at 149.441 kb on + strand, within Echvi_0149at 149.441 kb on + strand, within Echvi_0149at 149.441 kb on + strand, within Echvi_0149at 149.441 kb on + strand, within Echvi_0149at 149.441 kb on + strand, within Echvi_0149at 149.442 kb on - strand, within Echvi_0149at 149.442 kb on - strand, within Echvi_0149at 149.442 kb on - strand, within Echvi_0149at 149.445 kb on + strand, within Echvi_0149at 149.446 kb on - strand, within Echvi_0149at 149.498 kb on + strand, within Echvi_0149

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
remove
147,187 + Echvi_0146 0.60 -0.5
147,187 + Echvi_0146 0.60 +0.3
147,188 - Echvi_0146 0.60 -0.4
147,245 + Echvi_0146 0.66 -1.1
147,246 - Echvi_0146 0.66 -0.0
147,246 - Echvi_0146 0.66 -0.2
147,260 + Echvi_0146 0.67 +0.2
147,260 + Echvi_0146 0.67 +0.5
147,260 + Echvi_0146 0.67 -0.2
147,261 - Echvi_0146 0.68 +0.1
147,261 - Echvi_0146 0.68 +0.3
147,262 + Echvi_0146 0.68 +1.2
147,263 - Echvi_0146 0.68 +1.2
147,263 - Echvi_0146 0.68 -2.7
147,263 - Echvi_0146 0.68 -1.6
147,275 - Echvi_0146 0.69 +0.2
147,275 - Echvi_0146 0.69 -0.7
147,284 - Echvi_0146 0.70 -0.7
147,318 + Echvi_0146 0.73 -0.0
147,319 - Echvi_0146 0.74 +2.2
147,335 + Echvi_0146 0.75 +1.1
147,335 + Echvi_0146 0.75 +0.3
147,375 - Echvi_0146 0.79 -0.3
147,417 - Echvi_0146 0.84 -2.0
147,417 - Echvi_0146 0.84 +0.7
147,418 + Echvi_0146 0.84 -1.1
147,535 + +1.0
147,540 + +0.4
147,541 - -0.9
147,544 + +1.7
147,571 - -0.3
147,603 + +0.5
147,603 + -0.6
147,604 - +0.6
147,604 - -0.3
147,604 - -0.1
147,612 - -0.4
147,613 + -0.6
147,613 + +2.1
147,625 + +0.5
147,625 + -0.0
147,738 + Echvi_0147 0.31 +1.7
147,739 - Echvi_0147 0.32 +0.2
147,826 - Echvi_0147 0.50 +0.5
147,891 + Echvi_0147 0.63 -2.2
147,891 + Echvi_0147 0.63 -0.2
147,892 - Echvi_0147 0.63 -0.6
147,892 - Echvi_0147 0.63 +0.4
147,892 - Echvi_0147 0.63 +1.6
147,898 + Echvi_0147 0.64 -1.0
147,898 + Echvi_0147 0.64 -0.1
147,898 + Echvi_0147 0.64 -2.6
147,904 - Echvi_0147 0.66 +0.8
147,944 - Echvi_0147 0.74 -0.8
147,969 - Echvi_0147 0.79 +0.4
148,007 + Echvi_0147 0.87 -1.6
148,033 + +0.1
148,200 + Echvi_0148 0.16 +1.3
148,201 - Echvi_0148 0.17 -0.5
148,202 + Echvi_0148 0.17 -2.2
148,202 + Echvi_0148 0.17 -0.3
148,203 - Echvi_0148 0.17 -0.2
148,203 - Echvi_0148 0.17 -0.3
148,203 - Echvi_0148 0.17 -1.2
148,225 + Echvi_0148 0.23 -0.8
148,226 - Echvi_0148 0.24 +1.4
148,245 - Echvi_0148 0.29 +2.7
148,246 + Echvi_0148 0.29 -0.3
148,247 - Echvi_0148 0.29 -1.3
148,294 + Echvi_0148 0.43 +0.4
148,295 - Echvi_0148 0.43 -0.1
148,305 + Echvi_0148 0.46 -1.7
148,310 - Echvi_0148 0.47 +0.7
148,394 - Echvi_0148 0.71 -0.2
148,400 + Echvi_0148 0.72 -2.0
148,472 - +0.0
148,477 - -2.6
148,477 - -3.5
148,478 + +0.2
148,478 + -0.3
148,478 + -0.8
148,478 + -1.9
148,479 - +1.0
148,479 - -0.4
148,484 + -1.6
148,504 - +0.1
148,508 - -0.6
148,514 - +0.1
148,530 + -1.4
148,548 - -1.4
148,566 + +0.0
148,566 + -1.2
148,581 - +0.6
148,581 - +0.0
148,606 + -1.2
148,679 + -0.6
148,679 + +0.3
148,825 + Echvi_0149 0.18 +0.1
148,829 - Echvi_0149 0.19 -1.2
148,879 - Echvi_0149 0.24 +1.1
148,879 - Echvi_0149 0.24 +0.9
148,900 - Echvi_0149 0.26 +0.2
148,921 - Echvi_0149 0.28 +0.7
148,957 + Echvi_0149 0.31 -0.1
148,957 + Echvi_0149 0.31 -0.4
149,015 + Echvi_0149 0.37 -0.6
149,070 - Echvi_0149 0.42 -3.1
149,109 + Echvi_0149 0.46 -0.4
149,138 + Echvi_0149 0.48 +0.2
149,138 + Echvi_0149 0.48 +0.2
149,160 - Echvi_0149 0.51 -0.7
149,202 + Echvi_0149 0.55 +0.5
149,226 + Echvi_0149 0.57 +0.5
149,227 - Echvi_0149 0.57 -1.6
149,245 + Echvi_0149 0.59 +0.5
149,246 - Echvi_0149 0.59 -0.1
149,388 + Echvi_0149 0.73 +0.1
149,388 + Echvi_0149 0.73 -0.3
149,392 - Echvi_0149 0.73 +0.3
149,441 + Echvi_0149 0.78 -0.7
149,441 + Echvi_0149 0.78 +0.3
149,441 + Echvi_0149 0.78 -0.0
149,441 + Echvi_0149 0.78 -2.6
149,441 + Echvi_0149 0.78 -0.4
149,441 + Echvi_0149 0.78 +1.4
149,442 - Echvi_0149 0.78 +0.4
149,442 - Echvi_0149 0.78 +1.4
149,442 - Echvi_0149 0.78 +0.4
149,445 + Echvi_0149 0.78 -0.1
149,446 - Echvi_0149 0.78 +0.7
149,498 + Echvi_0149 0.83 -0.6

Or see this region's nucleotide sequence