Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0084

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0082 and Echvi_0083 overlap by 4 nucleotidesEchvi_0083 and Echvi_0084 are separated by 7 nucleotidesEchvi_0084 and Echvi_0085 are separated by 11 nucleotidesEchvi_0085 and Echvi_0086 are separated by 49 nucleotides Echvi_0082: Echvi_0082 - Glycosyltransferases, probably involved in cell wall biogenesis, at 82,822 to 83,925 _0082 Echvi_0083: Echvi_0083 - Predicted xylanase/chitin deacetylase, at 83,922 to 84,548 _0083 Echvi_0084: Echvi_0084 - Serine phosphatase RsbU, regulator of sigma subunit, at 84,556 to 85,767 _0084 Echvi_0085: Echvi_0085 - hypothetical protein, at 85,779 to 86,030 _0085 Echvi_0086: Echvi_0086 - Glycosyltransferases, probably involved in cell wall biogenesis, at 86,080 to 87,198 _0086 Position (kb) 84 85 86Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 83.597 kb on + strand, within Echvi_0082at 83.597 kb on + strand, within Echvi_0082at 83.698 kb on + strand, within Echvi_0082at 83.699 kb on - strand, within Echvi_0082at 83.699 kb on - strand, within Echvi_0082at 83.721 kb on - strand, within Echvi_0082at 83.765 kb on - strand, within Echvi_0082at 83.785 kb on + strand, within Echvi_0082at 83.861 kb on + strandat 83.918 kb on - strandat 83.925 kb on + strandat 83.926 kb on - strandat 83.926 kb on - strandat 83.992 kb on - strand, within Echvi_0083at 84.025 kb on - strand, within Echvi_0083at 84.095 kb on - strand, within Echvi_0083at 84.175 kb on + strand, within Echvi_0083at 84.199 kb on + strand, within Echvi_0083at 84.230 kb on + strand, within Echvi_0083at 84.230 kb on + strand, within Echvi_0083at 84.292 kb on + strand, within Echvi_0083at 84.293 kb on - strand, within Echvi_0083at 84.293 kb on - strand, within Echvi_0083at 84.293 kb on - strand, within Echvi_0083at 84.293 kb on - strand, within Echvi_0083at 84.296 kb on + strand, within Echvi_0083at 84.296 kb on + strand, within Echvi_0083at 84.296 kb on + strand, within Echvi_0083at 84.296 kb on + strand, within Echvi_0083at 84.296 kb on + strand, within Echvi_0083at 84.297 kb on - strand, within Echvi_0083at 84.363 kb on - strand, within Echvi_0083at 84.391 kb on - strand, within Echvi_0083at 84.463 kb on + strand, within Echvi_0083at 84.467 kb on + strand, within Echvi_0083at 84.467 kb on + strand, within Echvi_0083at 84.467 kb on + strand, within Echvi_0083at 84.468 kb on - strand, within Echvi_0083at 84.468 kb on - strand, within Echvi_0083at 84.470 kb on + strand, within Echvi_0083at 84.471 kb on - strand, within Echvi_0083at 84.548 kb on + strandat 84.548 kb on + strandat 84.548 kb on + strandat 84.548 kb on + strandat 84.548 kb on + strandat 84.548 kb on + strandat 84.548 kb on + strandat 84.549 kb on - strandat 84.549 kb on - strandat 84.552 kb on + strandat 84.552 kb on + strandat 84.553 kb on - strandat 84.553 kb on - strandat 84.553 kb on - strandat 84.553 kb on - strandat 84.574 kb on + strandat 84.575 kb on - strandat 84.577 kb on + strandat 84.578 kb on - strandat 84.738 kb on + strand, within Echvi_0084at 84.739 kb on - strand, within Echvi_0084at 84.794 kb on - strandat 84.831 kb on + strand, within Echvi_0084at 84.835 kb on - strand, within Echvi_0084at 84.911 kb on + strand, within Echvi_0084at 84.932 kb on + strand, within Echvi_0084at 84.933 kb on - strand, within Echvi_0084at 84.936 kb on + strand, within Echvi_0084at 84.937 kb on - strand, within Echvi_0084at 84.938 kb on + strand, within Echvi_0084at 84.938 kb on + strand, within Echvi_0084at 84.938 kb on + strand, within Echvi_0084at 84.938 kb on + strand, within Echvi_0084at 84.939 kb on - strand, within Echvi_0084at 84.939 kb on - strand, within Echvi_0084at 84.960 kb on + strand, within Echvi_0084at 84.995 kb on + strand, within Echvi_0084at 84.995 kb on + strand, within Echvi_0084at 84.995 kb on + strand, within Echvi_0084at 85.052 kb on - strand, within Echvi_0084at 85.052 kb on - strand, within Echvi_0084at 85.158 kb on - strand, within Echvi_0084at 85.176 kb on + strand, within Echvi_0084at 85.176 kb on + strand, within Echvi_0084at 85.176 kb on + strand, within Echvi_0084at 85.179 kb on + strand, within Echvi_0084at 85.245 kb on + strand, within Echvi_0084at 85.245 kb on + strand, within Echvi_0084at 85.246 kb on - strand, within Echvi_0084at 85.246 kb on - strand, within Echvi_0084at 85.246 kb on - strand, within Echvi_0084at 85.246 kb on - strand, within Echvi_0084at 85.253 kb on - strand, within Echvi_0084at 85.298 kb on - strand, within Echvi_0084at 85.344 kb on + strand, within Echvi_0084at 85.376 kb on - strand, within Echvi_0084at 85.408 kb on + strand, within Echvi_0084at 85.408 kb on + strand, within Echvi_0084at 85.408 kb on + strand, within Echvi_0084at 85.426 kb on - strand, within Echvi_0084at 85.426 kb on - strand, within Echvi_0084at 85.432 kb on - strand, within Echvi_0084at 85.448 kb on + strand, within Echvi_0084at 85.452 kb on + strand, within Echvi_0084at 85.453 kb on - strand, within Echvi_0084at 85.473 kb on - strand, within Echvi_0084at 85.494 kb on + strand, within Echvi_0084at 85.607 kb on + strand, within Echvi_0084at 85.608 kb on - strand, within Echvi_0084at 85.626 kb on + strand, within Echvi_0084at 85.627 kb on - strand, within Echvi_0084at 85.647 kb on + strandat 85.660 kb on - strandat 85.729 kb on + strandat 85.730 kb on - strandat 85.787 kb on + strandat 85.787 kb on + strandat 85.788 kb on - strandat 85.828 kb on + strand, within Echvi_0085at 85.828 kb on + strand, within Echvi_0085at 85.829 kb on - strand, within Echvi_0085at 85.835 kb on + strand, within Echvi_0085at 85.835 kb on + strand, within Echvi_0085at 85.836 kb on - strand, within Echvi_0085at 85.836 kb on - strand, within Echvi_0085at 85.968 kb on + strand, within Echvi_0085at 85.969 kb on - strand, within Echvi_0085at 86.074 kb on + strandat 86.191 kb on + strandat 86.192 kb on - strand, within Echvi_0086at 86.199 kb on - strand, within Echvi_0086at 86.202 kb on + strand, within Echvi_0086at 86.202 kb on + strand, within Echvi_0086at 86.202 kb on + strand, within Echvi_0086at 86.203 kb on - strand, within Echvi_0086at 86.203 kb on - strand, within Echvi_0086at 86.203 kb on - strand, within Echvi_0086at 86.205 kb on + strand, within Echvi_0086at 86.205 kb on + strand, within Echvi_0086at 86.205 kb on + strand, within Echvi_0086at 86.229 kb on - strand, within Echvi_0086at 86.236 kb on + strand, within Echvi_0086at 86.239 kb on + strand, within Echvi_0086at 86.245 kb on + strand, within Echvi_0086at 86.256 kb on - strand, within Echvi_0086at 86.257 kb on + strand, within Echvi_0086at 86.257 kb on + strand, within Echvi_0086at 86.257 kb on + strand, within Echvi_0086at 86.258 kb on - strand, within Echvi_0086at 86.258 kb on - strand, within Echvi_0086at 86.258 kb on - strand, within Echvi_0086at 86.279 kb on - strand, within Echvi_0086at 86.338 kb on + strand, within Echvi_0086at 86.471 kb on + strand, within Echvi_0086at 86.515 kb on + strand, within Echvi_0086at 86.519 kb on + strand, within Echvi_0086at 86.519 kb on + strand, within Echvi_0086at 86.520 kb on - strand, within Echvi_0086at 86.520 kb on - strand, within Echvi_0086at 86.566 kb on + strand, within Echvi_0086at 86.566 kb on + strand, within Echvi_0086at 86.566 kb on + strand, within Echvi_0086at 86.567 kb on - strand, within Echvi_0086at 86.567 kb on - strand, within Echvi_0086at 86.567 kb on - strand, within Echvi_0086at 86.567 kb on - strand, within Echvi_0086at 86.567 kb on - strand, within Echvi_0086at 86.567 kb on - strand, within Echvi_0086at 86.567 kb on - strand, within Echvi_0086at 86.569 kb on - strand, within Echvi_0086at 86.632 kb on - strand, within Echvi_0086

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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83,597 + Echvi_0082 0.70 -2.4
83,597 + Echvi_0082 0.70 +0.5
83,698 + Echvi_0082 0.79 -0.4
83,699 - Echvi_0082 0.79 +2.9
83,699 - Echvi_0082 0.79 +1.4
83,721 - Echvi_0082 0.81 +2.3
83,765 - Echvi_0082 0.85 +2.3
83,785 + Echvi_0082 0.87 +1.2
83,861 + +0.8
83,918 - +1.7
83,925 + -1.8
83,926 - +1.4
83,926 - +0.3
83,992 - Echvi_0083 0.11 +0.9
84,025 - Echvi_0083 0.16 +1.4
84,095 - Echvi_0083 0.28 -1.4
84,175 + Echvi_0083 0.40 +0.7
84,199 + Echvi_0083 0.44 +0.7
84,230 + Echvi_0083 0.49 +0.7
84,230 + Echvi_0083 0.49 -0.5
84,292 + Echvi_0083 0.59 +0.1
84,293 - Echvi_0083 0.59 -0.1
84,293 - Echvi_0083 0.59 +0.7
84,293 - Echvi_0083 0.59 +1.2
84,293 - Echvi_0083 0.59 +0.1
84,296 + Echvi_0083 0.60 -0.3
84,296 + Echvi_0083 0.60 -1.2
84,296 + Echvi_0083 0.60 +0.5
84,296 + Echvi_0083 0.60 -1.8
84,296 + Echvi_0083 0.60 +1.2
84,297 - Echvi_0083 0.60 -0.6
84,363 - Echvi_0083 0.70 +0.7
84,391 - Echvi_0083 0.75 -0.1
84,463 + Echvi_0083 0.86 -0.2
84,467 + Echvi_0083 0.87 +0.8
84,467 + Echvi_0083 0.87 -0.5
84,467 + Echvi_0083 0.87 +0.6
84,468 - Echvi_0083 0.87 +0.4
84,468 - Echvi_0083 0.87 -2.4
84,470 + Echvi_0083 0.87 +0.5
84,471 - Echvi_0083 0.88 +0.0
84,548 + -1.6
84,548 + -1.4
84,548 + -0.6
84,548 + -0.9
84,548 + +0.4
84,548 + -0.5
84,548 + +0.7
84,549 - -0.7
84,549 - +0.4
84,552 + +0.2
84,552 + -0.5
84,553 - +0.6
84,553 - +0.9
84,553 - +0.0
84,553 - +1.1
84,574 + +0.1
84,575 - -1.8
84,577 + -3.5
84,578 - -1.3
84,738 + Echvi_0084 0.15 +0.2
84,739 - Echvi_0084 0.15 -0.3
84,794 - +0.7
84,831 + Echvi_0084 0.23 -0.8
84,835 - Echvi_0084 0.23 -1.2
84,911 + Echvi_0084 0.29 -2.5
84,932 + Echvi_0084 0.31 -3.9
84,933 - Echvi_0084 0.31 -2.2
84,936 + Echvi_0084 0.31 +0.2
84,937 - Echvi_0084 0.31 +1.4
84,938 + Echvi_0084 0.32 -2.3
84,938 + Echvi_0084 0.32 -2.3
84,938 + Echvi_0084 0.32 -2.6
84,938 + Echvi_0084 0.32 -1.8
84,939 - Echvi_0084 0.32 -0.5
84,939 - Echvi_0084 0.32 -1.4
84,960 + Echvi_0084 0.33 -2.5
84,995 + Echvi_0084 0.36 +0.2
84,995 + Echvi_0084 0.36 +0.5
84,995 + Echvi_0084 0.36 -2.8
85,052 - Echvi_0084 0.41 -4.1
85,052 - Echvi_0084 0.41 -3.0
85,158 - Echvi_0084 0.50 +0.3
85,176 + Echvi_0084 0.51 -1.5
85,176 + Echvi_0084 0.51 +0.5
85,176 + Echvi_0084 0.51 +0.7
85,179 + Echvi_0084 0.51 -0.1
85,245 + Echvi_0084 0.57 -2.6
85,245 + Echvi_0084 0.57 +1.7
85,246 - Echvi_0084 0.57 -2.3
85,246 - Echvi_0084 0.57 -2.6
85,246 - Echvi_0084 0.57 -0.6
85,246 - Echvi_0084 0.57 -0.3
85,253 - Echvi_0084 0.58 -3.1
85,298 - Echvi_0084 0.61 +0.7
85,344 + Echvi_0084 0.65 -1.0
85,376 - Echvi_0084 0.68 +0.2
85,408 + Echvi_0084 0.70 -2.3
85,408 + Echvi_0084 0.70 -2.4
85,408 + Echvi_0084 0.70 -1.4
85,426 - Echvi_0084 0.72 -2.1
85,426 - Echvi_0084 0.72 +0.4
85,432 - Echvi_0084 0.72 +0.7
85,448 + Echvi_0084 0.74 -2.2
85,452 + Echvi_0084 0.74 -3.1
85,453 - Echvi_0084 0.74 -0.8
85,473 - Echvi_0084 0.76 -0.8
85,494 + Echvi_0084 0.77 +0.7
85,607 + Echvi_0084 0.87 -0.1
85,608 - Echvi_0084 0.87 -1.8
85,626 + Echvi_0084 0.88 -0.8
85,627 - Echvi_0084 0.88 -1.1
85,647 + -1.4
85,660 - -1.4
85,729 + -0.5
85,730 - -2.0
85,787 + +0.4
85,787 + -1.7
85,788 - +2.4
85,828 + Echvi_0085 0.19 -0.6
85,828 + Echvi_0085 0.19 -0.8
85,829 - Echvi_0085 0.20 +2.3
85,835 + Echvi_0085 0.22 +0.7
85,835 + Echvi_0085 0.22 -0.1
85,836 - Echvi_0085 0.23 +2.2
85,836 - Echvi_0085 0.23 +1.8
85,968 + Echvi_0085 0.75 +0.4
85,969 - Echvi_0085 0.75 +2.4
86,074 + -0.3
86,191 + +0.4
86,192 - Echvi_0086 0.10 +1.9
86,199 - Echvi_0086 0.11 +2.9
86,202 + Echvi_0086 0.11 +0.0
86,202 + Echvi_0086 0.11 +1.2
86,202 + Echvi_0086 0.11 +0.4
86,203 - Echvi_0086 0.11 +3.1
86,203 - Echvi_0086 0.11 +2.5
86,203 - Echvi_0086 0.11 +3.0
86,205 + Echvi_0086 0.11 -0.4
86,205 + Echvi_0086 0.11 +1.9
86,205 + Echvi_0086 0.11 -0.3
86,229 - Echvi_0086 0.13 +1.5
86,236 + Echvi_0086 0.14 +0.7
86,239 + Echvi_0086 0.14 +2.1
86,245 + Echvi_0086 0.15 -0.3
86,256 - Echvi_0086 0.16 +3.3
86,257 + Echvi_0086 0.16 +1.4
86,257 + Echvi_0086 0.16 +0.4
86,257 + Echvi_0086 0.16 +1.2
86,258 - Echvi_0086 0.16 +2.2
86,258 - Echvi_0086 0.16 +2.8
86,258 - Echvi_0086 0.16 +2.7
86,279 - Echvi_0086 0.18 +2.9
86,338 + Echvi_0086 0.23 -0.3
86,471 + Echvi_0086 0.35 +1.2
86,515 + Echvi_0086 0.39 -0.8
86,519 + Echvi_0086 0.39 +0.3
86,519 + Echvi_0086 0.39 +1.3
86,520 - Echvi_0086 0.39 +2.6
86,520 - Echvi_0086 0.39 +2.6
86,566 + Echvi_0086 0.43 +1.9
86,566 + Echvi_0086 0.43 -0.1
86,566 + Echvi_0086 0.43 +2.1
86,567 - Echvi_0086 0.44 +2.9
86,567 - Echvi_0086 0.44 +3.2
86,567 - Echvi_0086 0.44 +2.0
86,567 - Echvi_0086 0.44 +1.9
86,567 - Echvi_0086 0.44 +3.4
86,567 - Echvi_0086 0.44 +2.2
86,567 - Echvi_0086 0.44 +2.0
86,569 - Echvi_0086 0.44 +2.5
86,632 - Echvi_0086 0.49 +3.1

Or see this region's nucleotide sequence