Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0044 and Echvi_0045 are separated by 185 nucleotides Echvi_0045 and Echvi_0046 are separated by 150 nucleotides Echvi_0046 and Echvi_0047 are separated by 3 nucleotides
Echvi_0044: Echvi_0044 - protein RecA, at 41,564 to 42,592
_0044
Echvi_0045: Echvi_0045 - Protein of unknown function (DUF3108)., at 42,778 to 43,566
_0045
Echvi_0046: Echvi_0046 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 43,717 to 44,406
_0046
Echvi_0047: Echvi_0047 - His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 44,410 to 45,468
_0047
Position (kb) 42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 41.796 kb on + strand, within Echvi_0044 at 41.797 kb on - strand, within Echvi_0044 at 41.800 kb on + strand, within Echvi_0044 at 41.801 kb on - strand, within Echvi_0044 at 41.926 kb on + strand, within Echvi_0044 at 41.937 kb on + strand, within Echvi_0044 at 42.282 kb on + strand, within Echvi_0044 at 42.289 kb on + strand, within Echvi_0044 at 42.545 kb on - strand at 42.593 kb on - strand at 42.593 kb on - strand at 42.593 kb on - strand at 42.595 kb on - strand at 42.595 kb on - strand at 42.623 kb on - strand at 42.713 kb on - strand at 42.715 kb on + strand at 42.717 kb on + strand at 42.717 kb on + strand at 42.718 kb on - strand at 42.718 kb on - strand at 42.718 kb on - strand at 42.740 kb on - strand at 42.775 kb on + strand at 42.775 kb on + strand at 42.778 kb on - strand at 42.791 kb on + strand at 42.829 kb on + strand at 42.858 kb on + strand, within Echvi_0045 at 42.858 kb on + strand, within Echvi_0045 at 42.960 kb on - strand, within Echvi_0045 at 43.005 kb on - strand, within Echvi_0045 at 43.020 kb on - strand, within Echvi_0045 at 43.020 kb on - strand, within Echvi_0045 at 43.023 kb on + strand, within Echvi_0045 at 43.024 kb on - strand, within Echvi_0045 at 43.140 kb on + strand, within Echvi_0045 at 43.191 kb on - strand, within Echvi_0045 at 43.234 kb on - strand, within Echvi_0045 at 43.252 kb on + strand, within Echvi_0045 at 43.253 kb on - strand, within Echvi_0045 at 43.253 kb on - strand, within Echvi_0045 at 43.255 kb on - strand, within Echvi_0045 at 43.255 kb on - strand, within Echvi_0045 at 43.294 kb on - strand, within Echvi_0045 at 43.306 kb on - strand, within Echvi_0045 at 43.330 kb on + strand, within Echvi_0045 at 43.330 kb on + strand, within Echvi_0045 at 43.330 kb on + strand, within Echvi_0045 at 43.331 kb on - strand, within Echvi_0045 at 43.331 kb on - strand, within Echvi_0045 at 43.348 kb on + strand, within Echvi_0045 at 43.430 kb on + strand, within Echvi_0045 at 43.431 kb on - strand, within Echvi_0045 at 43.449 kb on + strand, within Echvi_0045 at 43.450 kb on - strand, within Echvi_0045 at 43.452 kb on + strand, within Echvi_0045 at 43.453 kb on - strand, within Echvi_0045 at 43.453 kb on - strand, within Echvi_0045 at 43.525 kb on - strand at 43.565 kb on - strand at 43.751 kb on + strand at 43.786 kb on + strand, within Echvi_0046 at 43.807 kb on + strand, within Echvi_0046 at 44.004 kb on - strand, within Echvi_0046 at 44.019 kb on - strand, within Echvi_0046 at 44.019 kb on - strand, within Echvi_0046 at 44.034 kb on + strand, within Echvi_0046 at 44.158 kb on - strand, within Echvi_0046 at 44.316 kb on - strand, within Echvi_0046 at 44.404 kb on + strand at 44.409 kb on + strand at 44.409 kb on + strand at 44.409 kb on + strand at 44.410 kb on - strand at 44.454 kb on + strand at 44.454 kb on + strand at 44.455 kb on - strand at 44.456 kb on + strand at 44.456 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 41,796 + Echvi_0044 0.23 -1.1 41,797 - Echvi_0044 0.23 -1.6 41,800 + Echvi_0044 0.23 -1.8 41,801 - Echvi_0044 0.23 -2.3 41,926 + Echvi_0044 0.35 +0.2 41,937 + Echvi_0044 0.36 -0.8 42,282 + Echvi_0044 0.70 +0.2 42,289 + Echvi_0044 0.70 -1.7 42,545 - -3.0 42,593 - -0.3 42,593 - +0.5 42,593 - +0.7 42,595 - -2.2 42,595 - +0.1 42,623 - -0.1 42,713 - -0.5 42,715 + -1.9 42,717 + -0.3 42,717 + +0.2 42,718 - +0.8 42,718 - +0.7 42,718 - -3.2 42,740 - +1.3 42,775 + -0.8 42,775 + +0.8 42,778 - -0.1 42,791 + +0.2 42,829 + -0.1 42,858 + Echvi_0045 0.10 +1.3 42,858 + Echvi_0045 0.10 -0.2 42,960 - Echvi_0045 0.23 +1.3 43,005 - Echvi_0045 0.29 -0.2 43,020 - Echvi_0045 0.31 -0.1 43,020 - Echvi_0045 0.31 +1.4 43,023 + Echvi_0045 0.31 -0.1 43,024 - Echvi_0045 0.31 +0.5 43,140 + Echvi_0045 0.46 +1.2 43,191 - Echvi_0045 0.52 -0.7 43,234 - Echvi_0045 0.58 +1.4 43,252 + Echvi_0045 0.60 +1.3 43,253 - Echvi_0045 0.60 -0.6 43,253 - Echvi_0045 0.60 +3.3 43,255 - Echvi_0045 0.60 +0.5 43,255 - Echvi_0045 0.60 +1.5 43,294 - Echvi_0045 0.65 +0.4 43,306 - Echvi_0045 0.67 +0.4 43,330 + Echvi_0045 0.70 -1.7 43,330 + Echvi_0045 0.70 -0.1 43,330 + Echvi_0045 0.70 +1.4 43,331 - Echvi_0045 0.70 +0.6 43,331 - Echvi_0045 0.70 +1.1 43,348 + Echvi_0045 0.72 +1.0 43,430 + Echvi_0045 0.83 +0.5 43,431 - Echvi_0045 0.83 -0.2 43,449 + Echvi_0045 0.85 -0.2 43,450 - Echvi_0045 0.85 -0.3 43,452 + Echvi_0045 0.85 +1.7 43,453 - Echvi_0045 0.86 +0.7 43,453 - Echvi_0045 0.86 +1.9 43,525 - +2.3 43,565 - +1.3 43,751 + +0.9 43,786 + Echvi_0046 0.10 -0.8 43,807 + Echvi_0046 0.13 -1.2 44,004 - Echvi_0046 0.42 -0.6 44,019 - Echvi_0046 0.44 +0.3 44,019 - Echvi_0046 0.44 -2.4 44,034 + Echvi_0046 0.46 +0.2 44,158 - Echvi_0046 0.64 -0.6 44,316 - Echvi_0046 0.87 +1.3 44,404 + +2.9 44,409 + -0.3 44,409 + +1.2 44,409 + -0.3 44,410 - -0.8 44,454 + +0.2 44,454 + -2.2 44,455 - -1.4 44,456 + -3.2 44,456 + +2.3
Or see this region's nucleotide sequence