Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0028 and Echvi_0029 are separated by 62 nucleotides Echvi_0029 and Echvi_0030 are separated by 536 nucleotides
Echvi_0028: Echvi_0028 - Site-specific recombinase XerD, at 26,675 to 27,688
_0028
Echvi_0029: Echvi_0029 - DNA repair proteins, at 27,751 to 28,314
_0029
Echvi_0030: Echvi_0030 - ribosomal protein S20, at 28,851 to 29,105
_0030
Position (kb) 27
28
29 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 27.762 kb on + strand at 27.762 kb on + strand at 27.764 kb on + strand at 27.773 kb on + strand at 27.852 kb on + strand, within Echvi_0029 at 27.923 kb on + strand, within Echvi_0029 at 27.944 kb on - strand, within Echvi_0029 at 27.965 kb on + strand, within Echvi_0029 at 27.965 kb on + strand, within Echvi_0029 at 27.966 kb on - strand, within Echvi_0029 at 27.966 kb on - strand, within Echvi_0029 at 27.966 kb on - strand, within Echvi_0029 at 27.966 kb on - strand, within Echvi_0029 at 27.966 kb on - strand, within Echvi_0029 at 27.967 kb on + strand, within Echvi_0029 at 27.967 kb on + strand, within Echvi_0029 at 27.967 kb on + strand, within Echvi_0029 at 27.967 kb on + strand, within Echvi_0029 at 27.967 kb on + strand, within Echvi_0029 at 27.967 kb on + strand, within Echvi_0029 at 27.967 kb on + strand, within Echvi_0029 at 27.968 kb on - strand, within Echvi_0029 at 27.968 kb on - strand, within Echvi_0029 at 28.036 kb on + strand, within Echvi_0029 at 28.036 kb on + strand, within Echvi_0029 at 28.062 kb on + strand, within Echvi_0029 at 28.063 kb on - strand, within Echvi_0029 at 28.063 kb on - strand, within Echvi_0029 at 28.063 kb on - strand, within Echvi_0029 at 28.063 kb on - strand, within Echvi_0029 at 28.128 kb on + strand, within Echvi_0029 at 28.128 kb on + strand, within Echvi_0029 at 28.148 kb on - strand, within Echvi_0029 at 28.148 kb on - strand, within Echvi_0029 at 28.148 kb on - strand, within Echvi_0029 at 28.149 kb on + strand, within Echvi_0029 at 28.243 kb on + strand, within Echvi_0029 at 28.243 kb on + strand, within Echvi_0029 at 28.305 kb on - strand at 28.352 kb on + strand at 28.417 kb on + strand at 28.418 kb on - strand at 28.423 kb on + strand at 28.559 kb on - strand at 28.563 kb on - strand at 28.563 kb on - strand at 28.567 kb on - strand at 28.567 kb on - strand at 28.568 kb on + strand at 28.587 kb on + strand at 28.591 kb on + strand at 28.591 kb on + strand at 28.592 kb on - strand at 28.597 kb on + strand at 28.598 kb on - strand at 28.621 kb on + strand at 28.666 kb on - strand at 28.688 kb on + strand at 28.710 kb on + strand at 28.757 kb on - strand at 28.757 kb on - strand at 28.757 kb on - strand at 28.775 kb on + strand at 28.775 kb on + strand at 28.836 kb on + strand at 28.841 kb on - strand at 28.850 kb on - strand at 28.992 kb on - strand, within Echvi_0030 at 29.204 kb on + strand at 29.272 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 27,762 + +1.0 27,762 + -0.2 27,764 + +1.3 27,773 + -0.3 27,852 + Echvi_0029 0.18 -0.1 27,923 + Echvi_0029 0.30 -0.1 27,944 - Echvi_0029 0.34 -0.4 27,965 + Echvi_0029 0.38 -0.0 27,965 + Echvi_0029 0.38 +1.5 27,966 - Echvi_0029 0.38 -1.8 27,966 - Echvi_0029 0.38 -0.7 27,966 - Echvi_0029 0.38 +0.5 27,966 - Echvi_0029 0.38 +0.4 27,966 - Echvi_0029 0.38 +0.3 27,967 + Echvi_0029 0.38 +1.5 27,967 + Echvi_0029 0.38 +1.7 27,967 + Echvi_0029 0.38 -0.3 27,967 + Echvi_0029 0.38 -0.1 27,967 + Echvi_0029 0.38 +1.0 27,967 + Echvi_0029 0.38 -1.7 27,967 + Echvi_0029 0.38 -0.2 27,968 - Echvi_0029 0.38 +0.5 27,968 - Echvi_0029 0.38 +1.0 28,036 + Echvi_0029 0.51 -0.8 28,036 + Echvi_0029 0.51 +1.2 28,062 + Echvi_0029 0.55 +0.7 28,063 - Echvi_0029 0.55 +2.5 28,063 - Echvi_0029 0.55 +0.5 28,063 - Echvi_0029 0.55 -0.6 28,063 - Echvi_0029 0.55 -1.0 28,128 + Echvi_0029 0.67 -0.3 28,128 + Echvi_0029 0.67 +1.1 28,148 - Echvi_0029 0.70 -2.8 28,148 - Echvi_0029 0.70 +2.1 28,148 - Echvi_0029 0.70 -0.1 28,149 + Echvi_0029 0.71 +0.4 28,243 + Echvi_0029 0.87 +0.4 28,243 + Echvi_0029 0.87 +0.4 28,305 - -1.0 28,352 + -0.5 28,417 + -1.6 28,418 - +0.3 28,423 + +1.0 28,559 - +0.5 28,563 - -0.1 28,563 - +0.2 28,567 - +0.2 28,567 - -0.1 28,568 + -0.3 28,587 + +1.5 28,591 + -0.1 28,591 + +1.4 28,592 - -0.2 28,597 + +1.7 28,598 - -0.4 28,621 + +0.4 28,666 - +0.5 28,688 + +2.0 28,710 + -0.7 28,757 - +1.2 28,757 - +1.6 28,757 - -1.8 28,775 + +0.7 28,775 + -1.3 28,836 + -0.6 28,841 - +2.5 28,850 - -1.6 28,992 - Echvi_0030 0.55 -1.1 29,204 + +1.1 29,272 - -0.1
Or see this region's nucleotide sequence