Strain Fitness in Agrobacterium fabrum C58 around Atu3207

Experiment: Melibiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3206 and Atu3207 are separated by 318 nucleotidesAtu3207 and Atu3208 are separated by 37 nucleotides Atu3206: Atu3206 - hypothetical protein, at 218,729 to 219,772 Atu3206 Atu3207: Atu3207 - diguanylate cyclase, at 220,091 to 222,085 Atu3207 Atu3208: Atu3208 - malate dehydrogenase, at 222,123 to 223,169 Atu3208 Position (kb) 220 221 222 223Strain fitness (log2 ratio) -1 0 1at 219.129 kb on - strand, within Atu3206at 219.136 kb on + strand, within Atu3206at 219.144 kb on - strand, within Atu3206at 219.153 kb on + strand, within Atu3206at 219.308 kb on + strand, within Atu3206at 219.326 kb on - strand, within Atu3206at 219.358 kb on + strand, within Atu3206at 219.366 kb on - strand, within Atu3206at 219.366 kb on - strand, within Atu3206at 219.366 kb on - strand, within Atu3206at 219.371 kb on - strand, within Atu3206at 219.384 kb on - strand, within Atu3206at 219.470 kb on - strand, within Atu3206at 219.495 kb on + strand, within Atu3206at 219.721 kb on + strandat 219.731 kb on + strandat 219.854 kb on + strandat 219.902 kb on + strandat 219.989 kb on + strandat 219.989 kb on + strandat 220.164 kb on + strandat 220.228 kb on - strandat 220.270 kb on - strandat 220.330 kb on - strand, within Atu3207at 220.355 kb on - strand, within Atu3207at 220.357 kb on + strand, within Atu3207at 220.380 kb on + strand, within Atu3207at 220.380 kb on + strand, within Atu3207at 220.388 kb on - strand, within Atu3207at 220.388 kb on - strand, within Atu3207at 220.388 kb on - strand, within Atu3207at 220.388 kb on - strand, within Atu3207at 220.408 kb on + strand, within Atu3207at 220.484 kb on - strand, within Atu3207at 220.489 kb on - strand, within Atu3207at 220.530 kb on + strand, within Atu3207at 220.532 kb on - strand, within Atu3207at 220.660 kb on - strand, within Atu3207at 220.719 kb on + strand, within Atu3207at 220.730 kb on + strand, within Atu3207at 220.740 kb on - strand, within Atu3207at 220.740 kb on - strand, within Atu3207at 220.799 kb on + strand, within Atu3207at 220.861 kb on + strand, within Atu3207at 220.865 kb on - strand, within Atu3207at 220.867 kb on + strand, within Atu3207at 220.867 kb on + strand, within Atu3207at 220.888 kb on - strand, within Atu3207at 220.890 kb on + strand, within Atu3207at 220.983 kb on - strand, within Atu3207at 221.052 kb on - strand, within Atu3207at 221.069 kb on + strand, within Atu3207at 221.096 kb on + strand, within Atu3207at 221.171 kb on - strand, within Atu3207at 221.406 kb on - strand, within Atu3207at 221.444 kb on + strand, within Atu3207at 221.569 kb on - strand, within Atu3207at 221.580 kb on - strand, within Atu3207at 221.639 kb on - strand, within Atu3207at 221.639 kb on - strand, within Atu3207at 221.661 kb on + strand, within Atu3207at 221.719 kb on - strand, within Atu3207at 221.721 kb on + strand, within Atu3207at 221.729 kb on - strand, within Atu3207at 221.866 kb on + strand, within Atu3207at 221.953 kb on + strandat 221.990 kb on - strandat 222.000 kb on - strandat 222.320 kb on + strand, within Atu3208at 222.374 kb on + strand, within Atu3208at 222.444 kb on + strand, within Atu3208at 222.533 kb on - strand, within Atu3208at 222.630 kb on - strand, within Atu3208at 222.654 kb on - strand, within Atu3208at 222.701 kb on + strand, within Atu3208at 222.972 kb on + strand, within Atu3208at 223.016 kb on - strand, within Atu3208at 223.037 kb on + strand, within Atu3208at 223.045 kb on - strand, within Atu3208at 223.047 kb on - strand, within Atu3208at 223.058 kb on + strand, within Atu3208at 223.066 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Melibiose (C)
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219,129 - Atu3206 0.38 -0.0
219,136 + Atu3206 0.39 -0.6
219,144 - Atu3206 0.40 -0.8
219,153 + Atu3206 0.41 -0.1
219,308 + Atu3206 0.55 -0.5
219,326 - Atu3206 0.57 -0.1
219,358 + Atu3206 0.60 -0.1
219,366 - Atu3206 0.61 -0.0
219,366 - Atu3206 0.61 +0.2
219,366 - Atu3206 0.61 +0.1
219,371 - Atu3206 0.61 +0.2
219,384 - Atu3206 0.63 -0.9
219,470 - Atu3206 0.71 -1.5
219,495 + Atu3206 0.73 +0.6
219,721 + -0.1
219,731 + -1.0
219,854 + -0.1
219,902 + -0.4
219,989 + -0.5
219,989 + +0.0
220,164 + -0.4
220,228 - -0.6
220,270 - -1.1
220,330 - Atu3207 0.12 -0.6
220,355 - Atu3207 0.13 -0.6
220,357 + Atu3207 0.13 -0.5
220,380 + Atu3207 0.14 -0.8
220,380 + Atu3207 0.14 -1.0
220,388 - Atu3207 0.15 -1.4
220,388 - Atu3207 0.15 -0.3
220,388 - Atu3207 0.15 +0.1
220,388 - Atu3207 0.15 -0.6
220,408 + Atu3207 0.16 -0.1
220,484 - Atu3207 0.20 -0.5
220,489 - Atu3207 0.20 +0.0
220,530 + Atu3207 0.22 -0.3
220,532 - Atu3207 0.22 +0.2
220,660 - Atu3207 0.29 -0.3
220,719 + Atu3207 0.31 -0.6
220,730 + Atu3207 0.32 +0.1
220,740 - Atu3207 0.33 +0.0
220,740 - Atu3207 0.33 +0.3
220,799 + Atu3207 0.35 -1.0
220,861 + Atu3207 0.39 -1.1
220,865 - Atu3207 0.39 -0.4
220,867 + Atu3207 0.39 -0.1
220,867 + Atu3207 0.39 -0.9
220,888 - Atu3207 0.40 -0.9
220,890 + Atu3207 0.40 -0.6
220,983 - Atu3207 0.45 -0.4
221,052 - Atu3207 0.48 -1.3
221,069 + Atu3207 0.49 -1.0
221,096 + Atu3207 0.50 +0.2
221,171 - Atu3207 0.54 -0.9
221,406 - Atu3207 0.66 +0.0
221,444 + Atu3207 0.68 -0.9
221,569 - Atu3207 0.74 -1.2
221,580 - Atu3207 0.75 -1.6
221,639 - Atu3207 0.78 -0.6
221,639 - Atu3207 0.78 -0.7
221,661 + Atu3207 0.79 -0.4
221,719 - Atu3207 0.82 +0.4
221,721 + Atu3207 0.82 -0.5
221,729 - Atu3207 0.82 -0.8
221,866 + Atu3207 0.89 -0.7
221,953 + -1.0
221,990 - -1.4
222,000 - +0.3
222,320 + Atu3208 0.19 +0.6
222,374 + Atu3208 0.24 +0.0
222,444 + Atu3208 0.31 +0.6
222,533 - Atu3208 0.39 -0.2
222,630 - Atu3208 0.48 -0.3
222,654 - Atu3208 0.51 +0.2
222,701 + Atu3208 0.55 +0.2
222,972 + Atu3208 0.81 +0.4
223,016 - Atu3208 0.85 -0.1
223,037 + Atu3208 0.87 -0.1
223,045 - Atu3208 0.88 +0.3
223,047 - Atu3208 0.88 +1.1
223,058 + Atu3208 0.89 +0.2
223,066 - -0.3

Or see this region's nucleotide sequence