Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_774 and PfGW456L13_775 are separated by 44 nucleotides PfGW456L13_775 and PfGW456L13_776 are separated by 6 nucleotides PfGW456L13_776 and PfGW456L13_777 are separated by 245 nucleotides
PfGW456L13_774 - Ferric siderophore transport system, periplasmic binding protein TonB, at 879,249 to 879,950
_774
PfGW456L13_775 - Biopolymer transport protein ExbD/TolR, at 879,995 to 880,423
_775
PfGW456L13_776 - MotA/TolQ/ExbB proton channel family protein, at 880,430 to 881,344
_776
PfGW456L13_777 - Nucleoside-diphosphate-sugar epimerases, at 881,590 to 882,447
_777
Position (kb) 880
881
882 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 879.968 kb on - strand at 881.507 kb on - strand at 881.507 kb on - strand at 881.507 kb on - strand at 881.509 kb on + strand at 881.510 kb on - strand at 881.532 kb on + strand at 881.532 kb on + strand at 881.533 kb on - strand at 881.533 kb on - strand at 881.533 kb on - strand at 881.533 kb on - strand at 881.536 kb on - strand at 881.601 kb on + strand at 881.601 kb on + strand at 881.785 kb on + strand, within PfGW456L13_777 at 881.794 kb on + strand, within PfGW456L13_777 at 881.794 kb on + strand, within PfGW456L13_777 at 881.794 kb on + strand, within PfGW456L13_777 at 881.794 kb on + strand, within PfGW456L13_777 at 881.795 kb on - strand, within PfGW456L13_777 at 881.795 kb on - strand, within PfGW456L13_777 at 881.795 kb on - strand, within PfGW456L13_777 at 881.795 kb on - strand, within PfGW456L13_777 at 881.842 kb on + strand, within PfGW456L13_777 at 881.842 kb on + strand, within PfGW456L13_777 at 881.842 kb on + strand, within PfGW456L13_777 at 881.842 kb on + strand, within PfGW456L13_777 at 881.842 kb on + strand, within PfGW456L13_777 at 881.842 kb on + strand, within PfGW456L13_777 at 881.842 kb on + strand, within PfGW456L13_777 at 881.843 kb on - strand, within PfGW456L13_777 at 881.843 kb on - strand, within PfGW456L13_777 at 881.843 kb on - strand, within PfGW456L13_777 at 881.932 kb on + strand, within PfGW456L13_777 at 882.051 kb on + strand, within PfGW456L13_777 at 882.051 kb on + strand, within PfGW456L13_777 at 882.052 kb on - strand, within PfGW456L13_777 at 882.073 kb on + strand, within PfGW456L13_777 at 882.073 kb on + strand, within PfGW456L13_777 at 882.073 kb on + strand, within PfGW456L13_777 at 882.073 kb on + strand, within PfGW456L13_777 at 882.074 kb on - strand, within PfGW456L13_777 at 882.074 kb on - strand, within PfGW456L13_777 at 882.074 kb on - strand, within PfGW456L13_777 at 882.145 kb on + strand, within PfGW456L13_777 at 882.145 kb on + strand, within PfGW456L13_777 at 882.145 kb on + strand, within PfGW456L13_777 at 882.145 kb on + strand, within PfGW456L13_777 at 882.145 kb on + strand, within PfGW456L13_777 at 882.145 kb on + strand, within PfGW456L13_777 at 882.146 kb on - strand, within PfGW456L13_777 at 882.146 kb on - strand, within PfGW456L13_777 at 882.146 kb on - strand, within PfGW456L13_777 at 882.235 kb on + strand, within PfGW456L13_777 at 882.236 kb on - strand, within PfGW456L13_777 at 882.236 kb on - strand, within PfGW456L13_777 at 882.236 kb on - strand, within PfGW456L13_777 at 882.295 kb on + strand, within PfGW456L13_777 at 882.296 kb on - strand, within PfGW456L13_777 at 882.296 kb on - strand, within PfGW456L13_777
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 879,968 - -0.3 881,507 - +0.6 881,507 - -0.3 881,507 - -0.3 881,509 + +0.4 881,510 - -0.7 881,532 + -0.6 881,532 + +0.9 881,533 - +0.3 881,533 - -0.1 881,533 - +0.6 881,533 - -1.0 881,536 - +0.7 881,601 + +0.7 881,601 + -0.2 881,785 + PfGW456L13_777 0.23 -0.1 881,794 + PfGW456L13_777 0.24 +0.8 881,794 + PfGW456L13_777 0.24 -3.3 881,794 + PfGW456L13_777 0.24 -0.3 881,794 + PfGW456L13_777 0.24 +1.7 881,795 - PfGW456L13_777 0.24 +0.1 881,795 - PfGW456L13_777 0.24 -0.2 881,795 - PfGW456L13_777 0.24 +1.2 881,795 - PfGW456L13_777 0.24 -0.1 881,842 + PfGW456L13_777 0.29 +1.2 881,842 + PfGW456L13_777 0.29 -0.2 881,842 + PfGW456L13_777 0.29 +0.0 881,842 + PfGW456L13_777 0.29 -1.0 881,842 + PfGW456L13_777 0.29 -0.8 881,842 + PfGW456L13_777 0.29 -0.3 881,842 + PfGW456L13_777 0.29 +0.0 881,843 - PfGW456L13_777 0.29 -1.0 881,843 - PfGW456L13_777 0.29 +0.1 881,843 - PfGW456L13_777 0.29 +0.1 881,932 + PfGW456L13_777 0.40 +0.6 882,051 + PfGW456L13_777 0.54 +0.1 882,051 + PfGW456L13_777 0.54 +0.4 882,052 - PfGW456L13_777 0.54 -0.1 882,073 + PfGW456L13_777 0.56 -0.7 882,073 + PfGW456L13_777 0.56 +1.4 882,073 + PfGW456L13_777 0.56 +0.4 882,073 + PfGW456L13_777 0.56 +0.8 882,074 - PfGW456L13_777 0.56 -0.1 882,074 - PfGW456L13_777 0.56 -1.2 882,074 - PfGW456L13_777 0.56 +0.8 882,145 + PfGW456L13_777 0.65 -0.0 882,145 + PfGW456L13_777 0.65 +0.3 882,145 + PfGW456L13_777 0.65 -1.0 882,145 + PfGW456L13_777 0.65 +0.0 882,145 + PfGW456L13_777 0.65 -0.9 882,145 + PfGW456L13_777 0.65 -0.3 882,146 - PfGW456L13_777 0.65 +0.2 882,146 - PfGW456L13_777 0.65 +0.6 882,146 - PfGW456L13_777 0.65 -0.4 882,235 + PfGW456L13_777 0.75 -1.7 882,236 - PfGW456L13_777 0.75 +0.3 882,236 - PfGW456L13_777 0.75 -0.0 882,236 - PfGW456L13_777 0.75 -1.0 882,295 + PfGW456L13_777 0.82 -0.0 882,296 - PfGW456L13_777 0.82 -0.4 882,296 - PfGW456L13_777 0.82 +1.0
Or see this region's nucleotide sequence