Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4774

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4772 and PfGW456L13_4773 overlap by 4 nucleotidesPfGW456L13_4773 and PfGW456L13_4774 are separated by 158 nucleotidesPfGW456L13_4774 and PfGW456L13_4775 overlap by 4 nucleotides PfGW456L13_4772 - ABC transporter for L-Asparagine and possibly other L-amino acids, permease component 2 (from data), at 5,317,896 to 5,318,567 _4772 PfGW456L13_4773 - ABC transporter for L-Asparagine and possibly other L-amino acids, putative ATPase component (from data), at 5,318,564 to 5,319,298 _4773 PfGW456L13_4774 - Signal transduction histidine kinase regulating C4-dicarboxylate transport system (EC 2.7.13.3), at 5,319,457 to 5,321,358 _4774 PfGW456L13_4775 - Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake, at 5,321,355 to 5,322,683 _4775 Position (kb) 5319 5320 5321 5322Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 5318.502 kb on + strandat 5318.502 kb on + strandat 5318.502 kb on + strandat 5318.502 kb on + strandat 5318.503 kb on - strandat 5318.564 kb on - strandat 5318.584 kb on + strandat 5318.594 kb on + strandat 5318.594 kb on + strandat 5318.595 kb on - strandat 5318.595 kb on - strandat 5318.611 kb on - strandat 5319.296 kb on + strandat 5319.296 kb on + strandat 5319.296 kb on + strandat 5319.296 kb on + strandat 5319.296 kb on + strandat 5319.296 kb on + strandat 5319.297 kb on - strandat 5319.297 kb on - strandat 5319.297 kb on - strandat 5319.297 kb on - strandat 5319.305 kb on + strandat 5319.305 kb on + strandat 5319.306 kb on - strandat 5319.320 kb on + strandat 5319.343 kb on + strandat 5319.343 kb on + strandat 5319.344 kb on - strandat 5319.360 kb on + strandat 5319.420 kb on + strandat 5319.421 kb on - strandat 5319.421 kb on - strandat 5319.574 kb on + strandat 5319.574 kb on + strandat 5319.575 kb on - strandat 5319.575 kb on - strandat 5319.601 kb on + strandat 5319.682 kb on + strand, within PfGW456L13_4774at 5319.682 kb on + strand, within PfGW456L13_4774at 5319.682 kb on + strand, within PfGW456L13_4774at 5319.682 kb on + strand, within PfGW456L13_4774at 5319.682 kb on + strand, within PfGW456L13_4774at 5319.682 kb on + strand, within PfGW456L13_4774at 5319.683 kb on - strand, within PfGW456L13_4774at 5319.683 kb on - strand, within PfGW456L13_4774at 5319.683 kb on - strand, within PfGW456L13_4774at 5319.683 kb on - strand, within PfGW456L13_4774at 5319.683 kb on - strand, within PfGW456L13_4774at 5319.683 kb on - strand, within PfGW456L13_4774at 5319.683 kb on - strand, within PfGW456L13_4774at 5319.688 kb on + strand, within PfGW456L13_4774at 5319.688 kb on + strand, within PfGW456L13_4774at 5319.688 kb on + strand, within PfGW456L13_4774at 5319.688 kb on + strand, within PfGW456L13_4774at 5319.688 kb on + strand, within PfGW456L13_4774at 5319.688 kb on + strand, within PfGW456L13_4774at 5319.689 kb on - strand, within PfGW456L13_4774at 5319.689 kb on - strand, within PfGW456L13_4774at 5319.689 kb on - strand, within PfGW456L13_4774at 5319.817 kb on + strand, within PfGW456L13_4774at 5319.817 kb on + strand, within PfGW456L13_4774at 5319.817 kb on + strand, within PfGW456L13_4774at 5319.817 kb on + strand, within PfGW456L13_4774at 5319.817 kb on + strand, within PfGW456L13_4774at 5319.817 kb on + strand, within PfGW456L13_4774at 5319.817 kb on + strand, within PfGW456L13_4774at 5319.818 kb on - strand, within PfGW456L13_4774at 5319.818 kb on - strand, within PfGW456L13_4774at 5319.818 kb on - strand, within PfGW456L13_4774at 5319.818 kb on - strand, within PfGW456L13_4774at 5319.818 kb on - strand, within PfGW456L13_4774at 5319.877 kb on + strand, within PfGW456L13_4774at 5319.877 kb on + strand, within PfGW456L13_4774at 5319.878 kb on - strand, within PfGW456L13_4774at 5319.878 kb on - strand, within PfGW456L13_4774at 5319.878 kb on - strand, within PfGW456L13_4774at 5319.946 kb on + strand, within PfGW456L13_4774at 5319.947 kb on - strand, within PfGW456L13_4774at 5319.947 kb on - strand, within PfGW456L13_4774at 5319.979 kb on + strand, within PfGW456L13_4774at 5319.982 kb on + strand, within PfGW456L13_4774at 5319.982 kb on + strand, within PfGW456L13_4774at 5319.983 kb on - strand, within PfGW456L13_4774at 5319.983 kb on - strand, within PfGW456L13_4774at 5319.983 kb on - strand, within PfGW456L13_4774at 5319.983 kb on - strand, within PfGW456L13_4774at 5319.983 kb on - strand, within PfGW456L13_4774at 5319.983 kb on - strand, within PfGW456L13_4774at 5319.983 kb on - strand, within PfGW456L13_4774at 5319.983 kb on - strand, within PfGW456L13_4774at 5319.983 kb on - strand, within PfGW456L13_4774at 5319.983 kb on - strand, within PfGW456L13_4774at 5319.983 kb on - strand, within PfGW456L13_4774at 5320.204 kb on + strand, within PfGW456L13_4774at 5320.204 kb on + strand, within PfGW456L13_4774at 5320.204 kb on + strand, within PfGW456L13_4774at 5320.204 kb on + strand, within PfGW456L13_4774at 5320.204 kb on + strand, within PfGW456L13_4774at 5320.205 kb on - strand, within PfGW456L13_4774at 5320.205 kb on - strand, within PfGW456L13_4774at 5320.205 kb on - strand, within PfGW456L13_4774at 5320.205 kb on - strand, within PfGW456L13_4774at 5320.205 kb on - strand, within PfGW456L13_4774at 5320.205 kb on - strand, within PfGW456L13_4774at 5320.205 kb on - strand, within PfGW456L13_4774at 5320.207 kb on + strand, within PfGW456L13_4774at 5320.207 kb on + strand, within PfGW456L13_4774at 5320.324 kb on + strand, within PfGW456L13_4774at 5320.324 kb on + strand, within PfGW456L13_4774at 5320.325 kb on - strand, within PfGW456L13_4774at 5320.325 kb on - strand, within PfGW456L13_4774at 5320.325 kb on - strand, within PfGW456L13_4774at 5320.325 kb on - strand, within PfGW456L13_4774at 5320.325 kb on - strand, within PfGW456L13_4774at 5320.354 kb on - strand, within PfGW456L13_4774at 5320.354 kb on - strand, within PfGW456L13_4774at 5320.759 kb on - strand, within PfGW456L13_4774at 5320.970 kb on + strand, within PfGW456L13_4774at 5320.971 kb on - strand, within PfGW456L13_4774at 5320.971 kb on - strand, within PfGW456L13_4774at 5320.971 kb on - strand, within PfGW456L13_4774at 5320.971 kb on - strand, within PfGW456L13_4774at 5321.301 kb on + strandat 5321.302 kb on - strandat 5321.302 kb on - strandat 5321.331 kb on - strandat 5321.331 kb on - strandat 5321.331 kb on - strandat 5321.355 kb on - strandat 5321.355 kb on - strandat 5321.369 kb on + strandat 5321.369 kb on + strandat 5321.369 kb on + strandat 5321.369 kb on + strandat 5321.369 kb on + strandat 5321.370 kb on - strandat 5321.374 kb on + strandat 5321.374 kb on + strandat 5321.374 kb on + strandat 5321.374 kb on + strandat 5321.374 kb on + strandat 5321.375 kb on - strandat 5321.375 kb on - strandat 5321.375 kb on - strandat 5321.375 kb on - strandat 5321.375 kb on - strandat 5321.375 kb on - strandat 5321.652 kb on + strand, within PfGW456L13_4775at 5321.750 kb on - strand, within PfGW456L13_4775at 5321.750 kb on - strand, within PfGW456L13_4775at 5321.750 kb on - strand, within PfGW456L13_4775at 5322.136 kb on + strand, within PfGW456L13_4775at 5322.139 kb on + strand, within PfGW456L13_4775at 5322.139 kb on + strand, within PfGW456L13_4775at 5322.140 kb on - strand, within PfGW456L13_4775at 5322.264 kb on + strand, within PfGW456L13_4775at 5322.264 kb on + strand, within PfGW456L13_4775at 5322.264 kb on + strand, within PfGW456L13_4775at 5322.264 kb on + strand, within PfGW456L13_4775at 5322.265 kb on - strand, within PfGW456L13_4775at 5322.267 kb on + strand, within PfGW456L13_4775

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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5,318,502 + -2.0
5,318,502 + +0.3
5,318,502 + -4.2
5,318,502 + -4.2
5,318,503 - -2.4
5,318,564 - -3.3
5,318,584 + -3.3
5,318,594 + -1.3
5,318,594 + -2.6
5,318,595 - -4.0
5,318,595 - -3.0
5,318,611 - -1.4
5,319,296 + -2.3
5,319,296 + -3.6
5,319,296 + -2.6
5,319,296 + -1.0
5,319,296 + -1.0
5,319,296 + -2.8
5,319,297 - -2.4
5,319,297 - -3.6
5,319,297 - -0.0
5,319,297 - -1.7
5,319,305 + -2.0
5,319,305 + -2.0
5,319,306 - -1.4
5,319,320 + -0.8
5,319,343 + -0.6
5,319,343 + -1.5
5,319,344 - -1.4
5,319,360 + -2.7
5,319,420 + -0.4
5,319,421 - -0.9
5,319,421 - -1.2
5,319,574 + -3.6
5,319,574 + -0.4
5,319,575 - -4.7
5,319,575 - -2.4
5,319,601 + -3.4
5,319,682 + PfGW456L13_4774 0.12 -3.2
5,319,682 + PfGW456L13_4774 0.12 -3.8
5,319,682 + PfGW456L13_4774 0.12 -1.8
5,319,682 + PfGW456L13_4774 0.12 -3.6
5,319,682 + PfGW456L13_4774 0.12 -3.5
5,319,682 + PfGW456L13_4774 0.12 -3.0
5,319,683 - PfGW456L13_4774 0.12 -3.6
5,319,683 - PfGW456L13_4774 0.12 -3.1
5,319,683 - PfGW456L13_4774 0.12 -4.1
5,319,683 - PfGW456L13_4774 0.12 -2.4
5,319,683 - PfGW456L13_4774 0.12 -1.6
5,319,683 - PfGW456L13_4774 0.12 -2.9
5,319,683 - PfGW456L13_4774 0.12 -4.5
5,319,688 + PfGW456L13_4774 0.12 -3.0
5,319,688 + PfGW456L13_4774 0.12 -3.4
5,319,688 + PfGW456L13_4774 0.12 -3.0
5,319,688 + PfGW456L13_4774 0.12 -0.5
5,319,688 + PfGW456L13_4774 0.12 -2.7
5,319,688 + PfGW456L13_4774 0.12 -1.3
5,319,689 - PfGW456L13_4774 0.12 -1.5
5,319,689 - PfGW456L13_4774 0.12 -3.6
5,319,689 - PfGW456L13_4774 0.12 -2.0
5,319,817 + PfGW456L13_4774 0.19 -3.8
5,319,817 + PfGW456L13_4774 0.19 -1.5
5,319,817 + PfGW456L13_4774 0.19 -3.9
5,319,817 + PfGW456L13_4774 0.19 -1.7
5,319,817 + PfGW456L13_4774 0.19 -3.5
5,319,817 + PfGW456L13_4774 0.19 -1.3
5,319,817 + PfGW456L13_4774 0.19 -2.6
5,319,818 - PfGW456L13_4774 0.19 -4.2
5,319,818 - PfGW456L13_4774 0.19 -3.0
5,319,818 - PfGW456L13_4774 0.19 -3.2
5,319,818 - PfGW456L13_4774 0.19 -2.3
5,319,818 - PfGW456L13_4774 0.19 -2.2
5,319,877 + PfGW456L13_4774 0.22 -1.8
5,319,877 + PfGW456L13_4774 0.22 -1.6
5,319,878 - PfGW456L13_4774 0.22 -4.4
5,319,878 - PfGW456L13_4774 0.22 -2.8
5,319,878 - PfGW456L13_4774 0.22 -2.0
5,319,946 + PfGW456L13_4774 0.26 -2.7
5,319,947 - PfGW456L13_4774 0.26 -1.0
5,319,947 - PfGW456L13_4774 0.26 -4.2
5,319,979 + PfGW456L13_4774 0.27 -2.4
5,319,982 + PfGW456L13_4774 0.28 -1.6
5,319,982 + PfGW456L13_4774 0.28 -1.7
5,319,983 - PfGW456L13_4774 0.28 -3.0
5,319,983 - PfGW456L13_4774 0.28 -1.9
5,319,983 - PfGW456L13_4774 0.28 -2.8
5,319,983 - PfGW456L13_4774 0.28 -3.7
5,319,983 - PfGW456L13_4774 0.28 -0.8
5,319,983 - PfGW456L13_4774 0.28 -1.9
5,319,983 - PfGW456L13_4774 0.28 -3.7
5,319,983 - PfGW456L13_4774 0.28 -1.9
5,319,983 - PfGW456L13_4774 0.28 -1.5
5,319,983 - PfGW456L13_4774 0.28 -2.5
5,319,983 - PfGW456L13_4774 0.28 -2.8
5,320,204 + PfGW456L13_4774 0.39 -2.4
5,320,204 + PfGW456L13_4774 0.39 -2.6
5,320,204 + PfGW456L13_4774 0.39 -3.2
5,320,204 + PfGW456L13_4774 0.39 -2.2
5,320,204 + PfGW456L13_4774 0.39 -3.4
5,320,205 - PfGW456L13_4774 0.39 -2.2
5,320,205 - PfGW456L13_4774 0.39 -1.2
5,320,205 - PfGW456L13_4774 0.39 -4.0
5,320,205 - PfGW456L13_4774 0.39 -3.1
5,320,205 - PfGW456L13_4774 0.39 -2.2
5,320,205 - PfGW456L13_4774 0.39 -3.8
5,320,205 - PfGW456L13_4774 0.39 -3.1
5,320,207 + PfGW456L13_4774 0.39 -0.5
5,320,207 + PfGW456L13_4774 0.39 -3.3
5,320,324 + PfGW456L13_4774 0.46 +0.4
5,320,324 + PfGW456L13_4774 0.46 -1.5
5,320,325 - PfGW456L13_4774 0.46 -1.8
5,320,325 - PfGW456L13_4774 0.46 -2.7
5,320,325 - PfGW456L13_4774 0.46 -2.4
5,320,325 - PfGW456L13_4774 0.46 -3.9
5,320,325 - PfGW456L13_4774 0.46 -2.9
5,320,354 - PfGW456L13_4774 0.47 -0.7
5,320,354 - PfGW456L13_4774 0.47 -2.8
5,320,759 - PfGW456L13_4774 0.68 -4.1
5,320,970 + PfGW456L13_4774 0.80 -2.9
5,320,971 - PfGW456L13_4774 0.80 -2.9
5,320,971 - PfGW456L13_4774 0.80 -1.4
5,320,971 - PfGW456L13_4774 0.80 -3.0
5,320,971 - PfGW456L13_4774 0.80 -3.8
5,321,301 + +0.1
5,321,302 - -2.5
5,321,302 - -2.5
5,321,331 - -2.6
5,321,331 - -3.2
5,321,331 - -3.6
5,321,355 - -2.4
5,321,355 - -0.7
5,321,369 + +0.5
5,321,369 + -1.9
5,321,369 + -2.4
5,321,369 + -2.9
5,321,369 + -2.7
5,321,370 - -2.2
5,321,374 + -1.9
5,321,374 + -4.3
5,321,374 + -3.8
5,321,374 + -1.8
5,321,374 + -3.0
5,321,375 - -1.9
5,321,375 - -2.8
5,321,375 - -3.1
5,321,375 - -3.9
5,321,375 - -4.0
5,321,375 - -3.9
5,321,652 + PfGW456L13_4775 0.22 -4.0
5,321,750 - PfGW456L13_4775 0.30 -3.4
5,321,750 - PfGW456L13_4775 0.30 -1.3
5,321,750 - PfGW456L13_4775 0.30 -3.3
5,322,136 + PfGW456L13_4775 0.59 -2.4
5,322,139 + PfGW456L13_4775 0.59 -3.9
5,322,139 + PfGW456L13_4775 0.59 -3.9
5,322,140 - PfGW456L13_4775 0.59 -0.8
5,322,264 + PfGW456L13_4775 0.68 -2.8
5,322,264 + PfGW456L13_4775 0.68 -3.1
5,322,264 + PfGW456L13_4775 0.68 -4.9
5,322,264 + PfGW456L13_4775 0.68 -4.3
5,322,265 - PfGW456L13_4775 0.68 -1.7
5,322,267 + PfGW456L13_4775 0.69 -3.5

Or see this region's nucleotide sequence