Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_416 and PfGW456L13_417 are separated by 307 nucleotides PfGW456L13_417 and PfGW456L13_418 are separated by 437 nucleotides PfGW456L13_418 and PfGW456L13_419 are separated by 678 nucleotides
PfGW456L13_416 - Transcriptional regulator, Cro/CI family, at 479,008 to 479,298
_416
PfGW456L13_417 - hypothetical protein, at 479,606 to 479,728
_417
PfGW456L13_418 - hypothetical protein, at 480,166 to 481,431
_418
PfGW456L13_419 - hypothetical protein, at 482,110 to 484,425
_419
Position (kb) 480
481
482 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 479.166 kb on - strand, within PfGW456L13_416 at 479.251 kb on + strand, within PfGW456L13_416 at 479.252 kb on - strand, within PfGW456L13_416 at 479.252 kb on - strand, within PfGW456L13_416 at 479.252 kb on - strand, within PfGW456L13_416 at 479.252 kb on - strand, within PfGW456L13_416 at 479.252 kb on - strand, within PfGW456L13_416 at 479.253 kb on + strand, within PfGW456L13_416 at 479.296 kb on + strand at 479.297 kb on - strand at 479.297 kb on - strand at 479.337 kb on + strand at 479.338 kb on - strand at 479.338 kb on - strand at 479.338 kb on - strand at 479.374 kb on + strand at 479.374 kb on + strand at 479.374 kb on + strand at 479.375 kb on - strand at 479.375 kb on - strand at 479.375 kb on - strand at 479.387 kb on + strand at 479.387 kb on + strand at 479.387 kb on + strand at 479.387 kb on + strand at 479.387 kb on + strand at 479.387 kb on + strand at 479.387 kb on + strand at 479.388 kb on - strand at 479.388 kb on - strand at 479.440 kb on - strand at 479.465 kb on - strand at 479.515 kb on - strand at 479.515 kb on - strand at 479.515 kb on - strand at 479.524 kb on + strand at 479.524 kb on + strand at 479.524 kb on + strand at 479.525 kb on - strand at 479.525 kb on - strand at 479.616 kb on + strand at 479.616 kb on + strand at 479.616 kb on + strand at 479.617 kb on - strand at 479.617 kb on - strand at 479.617 kb on - strand at 479.726 kb on + strand at 479.727 kb on - strand at 479.756 kb on + strand at 479.756 kb on + strand at 479.757 kb on - strand at 479.757 kb on - strand at 479.757 kb on - strand at 479.757 kb on - strand at 479.757 kb on - strand at 479.795 kb on + strand at 479.795 kb on + strand at 479.796 kb on - strand at 479.806 kb on + strand at 479.817 kb on - strand at 479.817 kb on - strand at 479.817 kb on - strand at 479.817 kb on - strand at 479.856 kb on + strand at 479.856 kb on + strand at 479.857 kb on - strand at 479.886 kb on + strand at 479.886 kb on + strand at 479.886 kb on + strand at 479.887 kb on - strand at 479.887 kb on - strand at 479.887 kb on - strand at 479.891 kb on - strand at 479.938 kb on + strand at 479.991 kb on + strand at 480.162 kb on - strand at 480.248 kb on - strand at 480.306 kb on - strand, within PfGW456L13_418 at 480.332 kb on + strand, within PfGW456L13_418 at 480.391 kb on + strand, within PfGW456L13_418 at 480.401 kb on - strand, within PfGW456L13_418 at 480.447 kb on + strand, within PfGW456L13_418 at 480.707 kb on + strand, within PfGW456L13_418 at 480.708 kb on - strand, within PfGW456L13_418 at 480.773 kb on + strand, within PfGW456L13_418 at 480.875 kb on - strand, within PfGW456L13_418 at 480.963 kb on - strand, within PfGW456L13_418 at 480.981 kb on - strand, within PfGW456L13_418 at 481.041 kb on + strand, within PfGW456L13_418 at 481.275 kb on - strand, within PfGW456L13_418 at 481.289 kb on + strand, within PfGW456L13_418 at 481.438 kb on - strand at 481.481 kb on - strand at 481.496 kb on + strand at 481.499 kb on - strand at 481.742 kb on + strand at 481.773 kb on + strand at 481.791 kb on + strand at 481.792 kb on - strand at 481.792 kb on - strand at 481.885 kb on - strand at 481.944 kb on + strand at 482.074 kb on - strand at 482.193 kb on - strand at 482.193 kb on - strand at 482.211 kb on + strand at 482.211 kb on + strand at 482.236 kb on + strand at 482.237 kb on - strand at 482.237 kb on - strand at 482.237 kb on - strand at 482.255 kb on + strand at 482.255 kb on + strand at 482.255 kb on + strand at 482.256 kb on - strand at 482.256 kb on - strand at 482.270 kb on + strand at 482.270 kb on + strand at 482.320 kb on + strand at 482.336 kb on - strand at 482.340 kb on - strand at 482.358 kb on + strand, within PfGW456L13_419 at 482.394 kb on + strand, within PfGW456L13_419 at 482.405 kb on + strand, within PfGW456L13_419
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 479,166 - PfGW456L13_416 0.54 -1.1 479,251 + PfGW456L13_416 0.84 -1.3 479,252 - PfGW456L13_416 0.84 +0.6 479,252 - PfGW456L13_416 0.84 +0.4 479,252 - PfGW456L13_416 0.84 +1.7 479,252 - PfGW456L13_416 0.84 -0.1 479,252 - PfGW456L13_416 0.84 +1.3 479,253 + PfGW456L13_416 0.84 -0.8 479,296 + -1.6 479,297 - -0.2 479,297 - -0.4 479,337 + +0.2 479,338 - +0.5 479,338 - +0.6 479,338 - +1.7 479,374 + +0.4 479,374 + +0.2 479,374 + -0.6 479,375 - +0.2 479,375 - +0.5 479,375 - +2.0 479,387 + +1.2 479,387 + +0.6 479,387 + -1.6 479,387 + +1.2 479,387 + -0.7 479,387 + -1.1 479,387 + -0.2 479,388 - -0.2 479,388 - -0.5 479,440 - -0.7 479,465 - -0.2 479,515 - +0.6 479,515 - -0.4 479,515 - +0.1 479,524 + -0.2 479,524 + -0.1 479,524 + -0.1 479,525 - +0.3 479,525 - +0.3 479,616 + -0.3 479,616 + -1.4 479,616 + +0.5 479,617 - +0.7 479,617 - -0.3 479,617 - +0.6 479,726 + -1.3 479,727 - -0.2 479,756 + -0.9 479,756 + +0.7 479,757 - +1.0 479,757 - +0.2 479,757 - +0.5 479,757 - +0.2 479,757 - -0.1 479,795 + -1.9 479,795 + +0.3 479,796 - -0.2 479,806 + -0.9 479,817 - -0.2 479,817 - -0.1 479,817 - -1.3 479,817 - -0.3 479,856 + +0.8 479,856 + -0.7 479,857 - +0.3 479,886 + -2.9 479,886 + -0.8 479,886 + -2.1 479,887 - +0.3 479,887 - -0.8 479,887 - -0.6 479,891 - +0.2 479,938 + +0.4 479,991 + -0.6 480,162 - -0.2 480,248 - -0.4 480,306 - PfGW456L13_418 0.11 -1.2 480,332 + PfGW456L13_418 0.13 -0.5 480,391 + PfGW456L13_418 0.18 -0.2 480,401 - PfGW456L13_418 0.19 +0.4 480,447 + PfGW456L13_418 0.22 +0.1 480,707 + PfGW456L13_418 0.43 +0.4 480,708 - PfGW456L13_418 0.43 -0.7 480,773 + PfGW456L13_418 0.48 +1.1 480,875 - PfGW456L13_418 0.56 +1.2 480,963 - PfGW456L13_418 0.63 -0.1 480,981 - PfGW456L13_418 0.64 +0.2 481,041 + PfGW456L13_418 0.69 -0.6 481,275 - PfGW456L13_418 0.88 -0.2 481,289 + PfGW456L13_418 0.89 -0.1 481,438 - +0.0 481,481 - -0.3 481,496 + +1.0 481,499 - +0.6 481,742 + -1.0 481,773 + -0.1 481,791 + -0.8 481,792 - +0.3 481,792 - -1.3 481,885 - -1.2 481,944 + -0.1 482,074 - +0.5 482,193 - +0.3 482,193 - +0.5 482,211 + +1.8 482,211 + -0.7 482,236 + +1.3 482,237 - +0.6 482,237 - +0.3 482,237 - +0.1 482,255 + -0.4 482,255 + +0.3 482,255 + +0.9 482,256 - -0.8 482,256 - +0.1 482,270 + -1.8 482,270 + -0.0 482,320 + -0.2 482,336 - +0.4 482,340 - +0.2 482,358 + PfGW456L13_419 0.11 -1.5 482,394 + PfGW456L13_419 0.12 -0.9 482,405 + PfGW456L13_419 0.13 +1.0
Or see this region's nucleotide sequence