Strain Fitness in Pseudomonas sp. RS175 around PFR28_04974

Experiment: L-tyrosine (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine (C) 10 mM
5,673,252	-		PFR28_04973	0.17	-1.4
5,673,252	-		PFR28_04973	0.17	+0.1
5,673,264	+		PFR28_04973	0.19	-0.1
5,673,360	+		PFR28_04973	0.31	-0.3
5,673,360	+		PFR28_04973	0.31	+0.1
5,673,360	+		PFR28_04973	0.31	-0.7
5,673,360	+		PFR28_04973	0.31	-1.2
5,673,361	-		PFR28_04973	0.31	-0.2
5,673,361	-		PFR28_04973	0.31	-0.3
5,673,361	-		PFR28_04973	0.31	-1.6
5,673,361	-		PFR28_04973	0.31	-0.3
5,673,361	-		PFR28_04973	0.31	+0.1
5,673,371	+		PFR28_04973	0.32	+0.5
5,673,371	+		PFR28_04973	0.32	-2.2
5,673,372	-		PFR28_04973	0.32	+0.1
5,673,374	+		PFR28_04973	0.32	+0.1
5,673,459	+		PFR28_04973	0.43	+1.1
5,673,459	+		PFR28_04973	0.43	+1.5
5,673,460	-		PFR28_04973	0.43	+2.4
5,673,460	-		PFR28_04973	0.43	-0.2
5,673,460	-		PFR28_04973	0.43	+0.2
5,673,483	+		PFR28_04973	0.46	+0.1
5,673,483	+		PFR28_04973	0.46	-0.5
5,673,484	-		PFR28_04973	0.46	-1.2
5,673,798	+		PFR28_04973	0.85	-0.4
5,673,798	+		PFR28_04973	0.85	-0.2
5,673,798	+		PFR28_04973	0.85	-1.6
5,673,798	+		PFR28_04973	0.85	-1.3
5,673,798	+		PFR28_04973	0.85	-1.9
5,673,799	-		PFR28_04973	0.85	+0.4
5,673,799	-		PFR28_04973	0.85	+0.1
5,673,799	-		PFR28_04973	0.85	+1.1
5,673,799	-		PFR28_04973	0.85	-0.6
5,673,799	-		PFR28_04973	0.85	-0.3
5,673,799	-		PFR28_04973	0.85	-0.0
5,673,799	-		PFR28_04973	0.85	-0.3
5,673,799	-		PFR28_04973	0.85	+0.2
5,673,799	-		PFR28_04973	0.85	-1.5
5,673,825	+		PFR28_04973	0.88	+0.2
5,673,906	+				+0.3
5,673,906	+				+0.1
5,673,906	+				-0.7
5,673,907	-				+0.5
5,673,907	-				-0.4
5,674,050	+				-0.1
5,674,050	+				-0.8
5,674,092	+				-0.7
5,674,198	+				+1.0
5,674,198	+				-0.4
5,674,399	+		PFR28_04974	0.18	-0.1
5,674,400	-		PFR28_04974	0.18	+0.1
5,674,469	+		PFR28_04974	0.26	-1.2
5,674,469	+		PFR28_04974	0.26	-1.4
5,674,469	+		PFR28_04974	0.26	+0.4
5,674,469	+		PFR28_04974	0.26	+1.1
5,674,470	-		PFR28_04974	0.26	-1.7
5,674,470	-		PFR28_04974	0.26	-1.5
5,674,470	-		PFR28_04974	0.26	-0.0
5,674,470	-		PFR28_04974	0.26	-0.5
5,674,594	+		PFR28_04974	0.39	+0.7
5,674,594	+		PFR28_04974	0.39	+0.2
5,674,594	+		PFR28_04974	0.39	+0.2
5,674,594	+		PFR28_04974	0.39	-0.6
5,674,594	+		PFR28_04974	0.39	+0.2
5,674,594	+		PFR28_04974	0.39	-0.6
5,674,594	+		PFR28_04974	0.39	-0.8
5,674,595	-		PFR28_04974	0.39	+1.2
5,674,595	-		PFR28_04974	0.39	-0.6
5,674,595	-		PFR28_04974	0.39	+1.6
5,674,595	-		PFR28_04974	0.39	-0.2
5,674,595	-		PFR28_04974	0.39	-0.4
5,674,595	-		PFR28_04974	0.39	-0.6
5,674,595	-		PFR28_04974	0.39	+0.9
5,674,595	-		PFR28_04974	0.39	-0.5
5,674,595	-		PFR28_04974	0.39	-0.5
5,674,595	-		PFR28_04974	0.39	+0.3
5,674,666	+		PFR28_04974	0.47	+0.5
5,674,666	+		PFR28_04974	0.47	+0.1
5,674,666	+		PFR28_04974	0.47	-1.4
5,674,667	-		PFR28_04974	0.47	-0.4
5,674,667	-		PFR28_04974	0.47	-1.9
5,674,667	-		PFR28_04974	0.47	-0.0
5,674,870	+		PFR28_04974	0.68	+0.1
5,674,870	+		PFR28_04974	0.68	+1.5
5,674,870	+		PFR28_04974	0.68	+0.7
5,674,871	-		PFR28_04974	0.68	-0.3
5,674,871	-		PFR28_04974	0.68	-2.1
5,674,871	-		PFR28_04974	0.68	+0.2
5,674,871	-		PFR28_04974	0.68	+0.3
5,674,871	-		PFR28_04974	0.68	+1.4
5,674,871	-		PFR28_04974	0.68	-1.5
5,674,894	+		PFR28_04974	0.71	+0.1
5,674,894	+		PFR28_04974	0.71	-2.1
5,674,895	-		PFR28_04974	0.71	-0.0
5,674,945	+		PFR28_04974	0.76	+0.3
5,674,945	+		PFR28_04974	0.76	-0.1
5,674,946	-		PFR28_04974	0.76	-0.4
5,674,946	-		PFR28_04974	0.76	-0.2
5,674,946	-		PFR28_04974	0.76	-0.8
5,675,204	+				-0.1
5,675,204	+				-0.2
5,675,204	+				+0.3
5,675,204	+				-0.7
5,675,204	+				-3.7
5,675,204	+				+0.4
5,675,204	+				+0.2
5,675,204	+				-0.5
5,675,204	+				-0.0
5,675,204	+				-1.7
5,675,204	+				-0.8
5,675,204	+				+0.1
5,675,204	+				-0.4
5,675,205	-				-1.2
5,675,205	-				-0.1
5,675,205	-				+0.9
5,675,205	-				-1.6
5,675,205	-				+0.3
5,675,205	-				+1.0
5,675,205	-				-0.3
5,675,205	-				-0.6
5,675,206	+				-1.0
5,675,206	+				+0.7
5,675,206	+				-1.5
5,675,206	+				-0.4
5,675,206	+				+0.5
5,675,206	+				-1.0
5,675,207	-				+0.2
5,675,207	-				+0.1
5,675,207	-				+1.6
5,675,207	-				-0.7
5,675,207	-				-0.3
5,675,207	-				-0.4
5,675,207	-				-1.2
5,675,207	-				-0.2
5,675,207	-				+1.3
5,675,207	-				+0.6
5,675,207	-				-0.9
5,675,207	-				-0.3
5,675,231	+				-1.8
5,675,411	+		PFR28_04975	0.20	+0.3
5,675,411	+		PFR28_04975	0.20	+0.4
5,675,411	+		PFR28_04975	0.20	+0.1
5,675,412	-		PFR28_04975	0.21	-0.3
5,675,459	+		PFR28_04975	0.26	+0.9
5,675,459	+		PFR28_04975	0.26	-0.5
5,675,459	+		PFR28_04975	0.26	-0.3
5,675,459	+		PFR28_04975	0.26	-1.1
5,675,460	-		PFR28_04975	0.26	-0.3
5,675,460	-		PFR28_04975	0.26	-2.7
5,675,460	-		PFR28_04975	0.26	+0.6
5,675,541	+		PFR28_04975	0.35	+0.0
5,675,726	-		PFR28_04975	0.55	+0.2
5,675,765	+		PFR28_04975	0.59	-0.8
5,675,766	-		PFR28_04975	0.59	+1.0
5,675,864	+		PFR28_04975	0.70	-1.1
5,675,865	-		PFR28_04975	0.70	-0.0
5,675,865	-		PFR28_04975	0.70	+0.2
5,675,865	-		PFR28_04975	0.70	-1.1
5,675,891	+		PFR28_04975	0.73	-1.5
5,676,029	+		PFR28_04975	0.88	+1.1
5,676,029	+		PFR28_04975	0.88	-0.7
5,676,029	+		PFR28_04975	0.88	+0.0
5,676,030	-		PFR28_04975	0.88	-1.4
5,676,030	-		PFR28_04975	0.88	+0.4
5,676,030	-		PFR28_04975	0.88	-2.4
5,676,030	-		PFR28_04975	0.88	-0.9
5,676,030	-		PFR28_04975	0.88	+1.0
5,676,030	-		PFR28_04975	0.88	-0.9
5,676,030	-		PFR28_04975	0.88	+1.8
5,676,030	-		PFR28_04975	0.88	+1.3
5,676,030	-		PFR28_04975	0.88	+0.3
5,676,030	-		PFR28_04975	0.88	+0.2
5,676,030	-		PFR28_04975	0.88	-0.4
5,676,030	-		PFR28_04975	0.88	-0.3
5,676,030	-		PFR28_04975	0.88	-0.3
5,676,030	-		PFR28_04975	0.88	-0.6
5,676,098	+				-0.0
5,676,116	+				-2.7
5,676,116	+				+0.6
5,676,116	+				-0.7
5,676,116	+				-0.9
5,676,116	+				+0.2
5,676,117	-				-1.9
5,676,117	-				+0.4
5,676,117	-				-0.4
5,676,117	-				+0.8
5,676,117	-				-0.4
5,676,157	+				-1.3
5,676,162	+				+0.6
5,676,163	-				+0.2
5,676,163	-				+1.1
5,676,163	-				-0.5