Experiment: m-Inositol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25780 and PS417_25785 are separated by 1 nucleotides PS417_25785 and PS417_25790 overlap by 4 nucleotides PS417_25790 and PS417_25795 are separated by 130 nucleotides
PS417_25780: PS417_25780 - molecular chaperone DnaJ, at 5,566,149 to 5,566,916
_25780
PS417_25785: PS417_25785 - mannose-1-phosphate guanylyltransferase, at 5,566,918 to 5,567,592
_25785
PS417_25790: PS417_25790 - aminoglycoside phosphotransferase, at 5,567,589 to 5,568,614
_25790
PS417_25795: PS417_25795 - LPS biosynthesis protein, at 5,568,745 to 5,571,555
_25795
Position (kb) 5567
5568
5569 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5567.593 kb on - strand at 5567.593 kb on - strand at 5567.593 kb on - strand at 5567.593 kb on - strand at 5567.677 kb on - strand at 5567.678 kb on + strand at 5567.679 kb on - strand at 5567.679 kb on - strand at 5567.680 kb on + strand at 5567.680 kb on + strand at 5567.932 kb on + strand, within PS417_25790 at 5567.933 kb on - strand, within PS417_25790 at 5567.948 kb on - strand, within PS417_25790 at 5568.011 kb on + strand, within PS417_25790 at 5568.011 kb on + strand at 5568.013 kb on + strand, within PS417_25790 at 5568.013 kb on + strand, within PS417_25790 at 5568.134 kb on - strand, within PS417_25790 at 5568.182 kb on - strand, within PS417_25790 at 5568.182 kb on - strand, within PS417_25790 at 5568.591 kb on + strand at 5568.598 kb on - strand at 5568.615 kb on + strand at 5568.616 kb on - strand at 5568.659 kb on + strand at 5568.659 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m-Inositol (C) remove 5,567,593 - -0.3 5,567,593 - -0.4 5,567,593 - -2.5 5,567,593 - +0.0 5,567,677 - -1.2 5,567,678 + +0.3 5,567,679 - -0.7 5,567,679 - +1.9 5,567,680 + -0.5 5,567,680 + -0.1 5,567,932 + PS417_25790 0.33 +0.5 5,567,933 - PS417_25790 0.34 -0.2 5,567,948 - PS417_25790 0.35 -0.8 5,568,011 + PS417_25790 0.41 -0.4 5,568,011 + +1.2 5,568,013 + PS417_25790 0.41 +0.1 5,568,013 + PS417_25790 0.41 -0.8 5,568,134 - PS417_25790 0.53 -0.6 5,568,182 - PS417_25790 0.58 -0.0 5,568,182 - PS417_25790 0.58 -0.1 5,568,591 + +1.6 5,568,598 - +0.1 5,568,615 + -0.5 5,568,616 - -0.8 5,568,659 + +0.2 5,568,659 + -0.0
Or see this region's nucleotide sequence