Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4620 and Echvi_4621 are separated by 6 nucleotides Echvi_4621 and Echvi_4622 are separated by 11 nucleotides Echvi_4622 and Echvi_4623 overlap by 8 nucleotides
Echvi_4620: Echvi_4620 - Glycosyltransferases involved in cell wall biogenesis, at 5,527,882 to 5,528,844
_4620
Echvi_4621: Echvi_4621 - hypothetical protein, at 5,528,851 to 5,529,396
_4621
Echvi_4622: Echvi_4622 - hypothetical protein, at 5,529,408 to 5,529,920
_4622
Echvi_4623: Echvi_4623 - Dihydroorotase and related cyclic amidohydrolases, at 5,529,913 to 5,531,157
_4623
Position (kb) 5529
5530 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5528.814 kb on - strand at 5528.849 kb on + strand at 5528.886 kb on + strand at 5528.920 kb on + strand, within Echvi_4621 at 5528.943 kb on + strand, within Echvi_4621 at 5528.963 kb on + strand, within Echvi_4621 at 5528.964 kb on - strand, within Echvi_4621 at 5528.964 kb on - strand, within Echvi_4621 at 5529.051 kb on + strand, within Echvi_4621 at 5529.076 kb on + strand, within Echvi_4621 at 5529.076 kb on + strand, within Echvi_4621 at 5529.097 kb on + strand, within Echvi_4621 at 5529.098 kb on - strand, within Echvi_4621 at 5529.105 kb on + strand, within Echvi_4621 at 5529.105 kb on + strand, within Echvi_4621 at 5529.105 kb on + strand, within Echvi_4621 at 5529.106 kb on - strand, within Echvi_4621 at 5529.106 kb on - strand, within Echvi_4621 at 5529.106 kb on - strand, within Echvi_4621 at 5529.107 kb on + strand, within Echvi_4621 at 5529.107 kb on + strand, within Echvi_4621 at 5529.107 kb on + strand, within Echvi_4621 at 5529.107 kb on + strand, within Echvi_4621 at 5529.108 kb on - strand, within Echvi_4621 at 5529.156 kb on + strand, within Echvi_4621 at 5529.157 kb on - strand, within Echvi_4621 at 5529.195 kb on - strand, within Echvi_4621 at 5529.220 kb on - strand, within Echvi_4621 at 5529.236 kb on - strand, within Echvi_4621 at 5529.249 kb on - strand, within Echvi_4621 at 5529.249 kb on - strand, within Echvi_4621 at 5529.250 kb on + strand, within Echvi_4621 at 5529.251 kb on - strand, within Echvi_4621 at 5529.254 kb on - strand, within Echvi_4621 at 5529.254 kb on - strand, within Echvi_4621 at 5529.301 kb on + strand, within Echvi_4621 at 5529.301 kb on + strand, within Echvi_4621 at 5529.301 kb on + strand, within Echvi_4621 at 5529.301 kb on + strand, within Echvi_4621 at 5529.309 kb on - strand, within Echvi_4621 at 5529.337 kb on + strand, within Echvi_4621 at 5529.443 kb on + strand at 5529.566 kb on + strand, within Echvi_4622 at 5529.569 kb on + strand, within Echvi_4622 at 5529.570 kb on - strand, within Echvi_4622 at 5529.570 kb on - strand, within Echvi_4622 at 5529.571 kb on + strand, within Echvi_4622 at 5529.571 kb on + strand, within Echvi_4622 at 5529.572 kb on - strand, within Echvi_4622 at 5529.592 kb on + strand, within Echvi_4622 at 5529.592 kb on + strand, within Echvi_4622 at 5529.613 kb on + strand, within Echvi_4622 at 5529.613 kb on + strand, within Echvi_4622 at 5529.614 kb on - strand, within Echvi_4622 at 5529.614 kb on - strand, within Echvi_4622 at 5529.625 kb on - strand, within Echvi_4622 at 5529.692 kb on + strand, within Echvi_4622 at 5529.770 kb on + strand, within Echvi_4622 at 5529.804 kb on + strand, within Echvi_4622 at 5529.805 kb on - strand, within Echvi_4622 at 5529.805 kb on - strand, within Echvi_4622 at 5529.812 kb on + strand, within Echvi_4622 at 5529.835 kb on - strand, within Echvi_4622 at 5529.891 kb on + strand at 5529.906 kb on - strand at 5529.914 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 5,528,814 - +4.4 5,528,849 + +0.8 5,528,886 + +0.8 5,528,920 + Echvi_4621 0.13 +1.2 5,528,943 + Echvi_4621 0.17 -0.5 5,528,963 + Echvi_4621 0.21 +3.3 5,528,964 - Echvi_4621 0.21 -0.4 5,528,964 - Echvi_4621 0.21 +1.2 5,529,051 + Echvi_4621 0.37 +0.0 5,529,076 + Echvi_4621 0.41 -0.2 5,529,076 + Echvi_4621 0.41 +2.6 5,529,097 + Echvi_4621 0.45 +1.7 5,529,098 - Echvi_4621 0.45 -0.0 5,529,105 + Echvi_4621 0.47 +2.1 5,529,105 + Echvi_4621 0.47 +2.1 5,529,105 + Echvi_4621 0.47 +2.0 5,529,106 - Echvi_4621 0.47 -2.2 5,529,106 - Echvi_4621 0.47 -2.2 5,529,106 - Echvi_4621 0.47 -0.2 5,529,107 + Echvi_4621 0.47 -0.2 5,529,107 + Echvi_4621 0.47 +2.8 5,529,107 + Echvi_4621 0.47 +2.8 5,529,107 + Echvi_4621 0.47 +1.1 5,529,108 - Echvi_4621 0.47 -0.5 5,529,156 + Echvi_4621 0.56 +2.0 5,529,157 - Echvi_4621 0.56 +0.8 5,529,195 - Echvi_4621 0.63 -2.7 5,529,220 - Echvi_4621 0.68 -3.4 5,529,236 - Echvi_4621 0.71 +3.0 5,529,249 - Echvi_4621 0.73 -1.6 5,529,249 - Echvi_4621 0.73 -0.8 5,529,250 + Echvi_4621 0.73 +2.1 5,529,251 - Echvi_4621 0.73 +0.2 5,529,254 - Echvi_4621 0.74 -2.7 5,529,254 - Echvi_4621 0.74 +0.1 5,529,301 + Echvi_4621 0.82 +3.4 5,529,301 + Echvi_4621 0.82 -1.5 5,529,301 + Echvi_4621 0.82 +0.7 5,529,301 + Echvi_4621 0.82 +1.8 5,529,309 - Echvi_4621 0.84 -0.1 5,529,337 + Echvi_4621 0.89 -2.0 5,529,443 + +2.5 5,529,566 + Echvi_4622 0.31 +1.8 5,529,569 + Echvi_4622 0.31 +1.9 5,529,570 - Echvi_4622 0.32 +2.6 5,529,570 - Echvi_4622 0.32 +0.0 5,529,571 + Echvi_4622 0.32 +3.2 5,529,571 + Echvi_4622 0.32 +1.6 5,529,572 - Echvi_4622 0.32 +2.2 5,529,592 + Echvi_4622 0.36 +2.7 5,529,592 + Echvi_4622 0.36 +1.4 5,529,613 + Echvi_4622 0.40 +0.2 5,529,613 + Echvi_4622 0.40 +1.7 5,529,614 - Echvi_4622 0.40 +2.0 5,529,614 - Echvi_4622 0.40 +2.4 5,529,625 - Echvi_4622 0.42 +2.1 5,529,692 + Echvi_4622 0.55 +1.2 5,529,770 + Echvi_4622 0.71 +1.1 5,529,804 + Echvi_4622 0.77 +1.2 5,529,805 - Echvi_4622 0.77 -0.2 5,529,805 - Echvi_4622 0.77 +2.0 5,529,812 + Echvi_4622 0.79 +1.0 5,529,835 - Echvi_4622 0.83 +0.8 5,529,891 + +2.5 5,529,906 - +1.5 5,529,914 + +1.5
Or see this region's nucleotide sequence