Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4201 and Echvi_4202 are separated by 208 nucleotides Echvi_4202 and Echvi_4203 are separated by 18 nucleotides
Echvi_4201: Echvi_4201 - Bacterial surface proteins containing Ig-like domains, at 5,017,497 to 5,021,792
_4201
Echvi_4202: Echvi_4202 - SusD family., at 5,022,001 to 5,023,641
_4202
Echvi_4203: Echvi_4203 - TonB-linked outer membrane protein, SusC/RagA family, at 5,023,660 to 5,027,049
_4203
Position (kb) 5022
5023
5024 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5021.093 kb on + strand, within Echvi_4201 at 5021.093 kb on + strand, within Echvi_4201 at 5021.093 kb on + strand, within Echvi_4201 at 5021.095 kb on + strand, within Echvi_4201 at 5021.096 kb on - strand, within Echvi_4201 at 5021.102 kb on + strand, within Echvi_4201 at 5021.171 kb on + strand, within Echvi_4201 at 5021.172 kb on - strand, within Echvi_4201 at 5021.218 kb on - strand, within Echvi_4201 at 5021.226 kb on - strand, within Echvi_4201 at 5021.255 kb on - strand, within Echvi_4201 at 5021.260 kb on + strand, within Echvi_4201 at 5021.260 kb on + strand, within Echvi_4201 at 5021.261 kb on - strand, within Echvi_4201 at 5021.261 kb on - strand, within Echvi_4201 at 5021.261 kb on - strand, within Echvi_4201 at 5021.278 kb on + strand, within Echvi_4201 at 5021.279 kb on - strand, within Echvi_4201 at 5021.316 kb on - strand, within Echvi_4201 at 5021.336 kb on + strand, within Echvi_4201 at 5021.347 kb on + strand, within Echvi_4201 at 5021.347 kb on + strand, within Echvi_4201 at 5021.347 kb on + strand, within Echvi_4201 at 5021.347 kb on + strand, within Echvi_4201 at 5021.348 kb on - strand, within Echvi_4201 at 5021.348 kb on - strand, within Echvi_4201 at 5021.359 kb on + strand, within Echvi_4201 at 5021.370 kb on + strand at 5021.370 kb on + strand at 5021.370 kb on + strand at 5021.370 kb on + strand at 5021.370 kb on + strand at 5021.370 kb on + strand at 5021.370 kb on + strand at 5021.371 kb on - strand at 5021.371 kb on - strand at 5021.371 kb on - strand at 5021.414 kb on + strand at 5021.414 kb on + strand at 5021.414 kb on + strand at 5021.414 kb on + strand at 5021.415 kb on - strand at 5021.415 kb on - strand at 5021.415 kb on - strand at 5021.415 kb on - strand at 5021.415 kb on - strand at 5021.417 kb on + strand at 5021.417 kb on + strand at 5021.417 kb on + strand at 5021.483 kb on + strand at 5021.483 kb on + strand at 5021.484 kb on - strand at 5021.484 kb on - strand at 5021.484 kb on - strand at 5021.485 kb on + strand at 5021.486 kb on - strand at 5021.486 kb on - strand at 5021.495 kb on + strand at 5021.604 kb on + strand at 5021.604 kb on + strand at 5021.616 kb on - strand at 5021.620 kb on + strand at 5021.624 kb on + strand at 5021.624 kb on + strand at 5021.637 kb on + strand at 5021.637 kb on + strand at 5021.697 kb on + strand at 5021.706 kb on + strand at 5021.770 kb on + strand at 5021.771 kb on - strand at 5021.771 kb on - strand at 5021.783 kb on - strand at 5021.787 kb on - strand at 5021.788 kb on + strand at 5021.805 kb on + strand at 5021.825 kb on + strand at 5021.825 kb on + strand at 5021.869 kb on - strand at 5021.869 kb on - strand at 5021.901 kb on + strand at 5021.902 kb on - strand at 5021.902 kb on - strand at 5021.902 kb on - strand at 5021.904 kb on + strand at 5021.904 kb on + strand at 5021.905 kb on - strand at 5022.028 kb on - strand at 5022.033 kb on + strand at 5022.036 kb on + strand at 5022.037 kb on - strand at 5022.059 kb on - strand at 5022.060 kb on + strand at 5022.108 kb on + strand at 5022.162 kb on + strand at 5022.163 kb on - strand at 5022.283 kb on + strand, within Echvi_4202 at 5022.299 kb on - strand, within Echvi_4202 at 5022.317 kb on - strand, within Echvi_4202 at 5022.333 kb on + strand, within Echvi_4202 at 5022.333 kb on + strand, within Echvi_4202 at 5022.334 kb on - strand, within Echvi_4202 at 5022.335 kb on + strand, within Echvi_4202 at 5022.336 kb on - strand, within Echvi_4202 at 5022.444 kb on + strand, within Echvi_4202 at 5022.468 kb on + strand, within Echvi_4202 at 5022.503 kb on + strand, within Echvi_4202 at 5022.503 kb on + strand, within Echvi_4202 at 5022.513 kb on + strand, within Echvi_4202 at 5022.514 kb on - strand, within Echvi_4202 at 5022.543 kb on + strand, within Echvi_4202 at 5022.543 kb on + strand, within Echvi_4202 at 5022.543 kb on + strand, within Echvi_4202 at 5022.543 kb on + strand, within Echvi_4202 at 5022.543 kb on + strand, within Echvi_4202 at 5022.544 kb on - strand, within Echvi_4202 at 5022.550 kb on - strand, within Echvi_4202 at 5022.579 kb on + strand, within Echvi_4202 at 5022.579 kb on + strand, within Echvi_4202 at 5022.582 kb on - strand, within Echvi_4202 at 5022.602 kb on + strand, within Echvi_4202 at 5022.603 kb on - strand, within Echvi_4202 at 5022.603 kb on - strand, within Echvi_4202 at 5022.603 kb on - strand, within Echvi_4202 at 5022.603 kb on - strand, within Echvi_4202 at 5022.604 kb on + strand, within Echvi_4202 at 5022.605 kb on - strand, within Echvi_4202 at 5022.609 kb on + strand, within Echvi_4202 at 5022.609 kb on + strand, within Echvi_4202 at 5022.609 kb on + strand, within Echvi_4202 at 5022.609 kb on + strand, within Echvi_4202 at 5022.609 kb on + strand, within Echvi_4202 at 5022.609 kb on + strand, within Echvi_4202 at 5022.610 kb on - strand, within Echvi_4202 at 5022.610 kb on - strand, within Echvi_4202 at 5022.610 kb on - strand, within Echvi_4202 at 5022.610 kb on - strand, within Echvi_4202 at 5022.610 kb on - strand, within Echvi_4202 at 5022.612 kb on - strand, within Echvi_4202 at 5022.612 kb on - strand, within Echvi_4202 at 5022.639 kb on - strand, within Echvi_4202 at 5022.639 kb on - strand, within Echvi_4202 at 5022.674 kb on + strand, within Echvi_4202 at 5022.674 kb on + strand, within Echvi_4202 at 5022.674 kb on + strand, within Echvi_4202 at 5022.674 kb on + strand, within Echvi_4202 at 5022.699 kb on - strand, within Echvi_4202 at 5022.730 kb on - strand, within Echvi_4202 at 5022.888 kb on + strand, within Echvi_4202 at 5022.889 kb on - strand, within Echvi_4202 at 5022.889 kb on - strand, within Echvi_4202 at 5023.063 kb on + strand, within Echvi_4202 at 5023.064 kb on - strand, within Echvi_4202 at 5023.106 kb on - strand, within Echvi_4202 at 5023.154 kb on + strand, within Echvi_4202 at 5023.154 kb on + strand, within Echvi_4202 at 5023.156 kb on + strand, within Echvi_4202 at 5023.156 kb on + strand, within Echvi_4202 at 5023.156 kb on + strand, within Echvi_4202 at 5023.156 kb on + strand, within Echvi_4202 at 5023.156 kb on + strand, within Echvi_4202 at 5023.157 kb on - strand, within Echvi_4202 at 5023.157 kb on - strand, within Echvi_4202 at 5023.157 kb on - strand, within Echvi_4202 at 5023.181 kb on + strand, within Echvi_4202 at 5023.189 kb on - strand, within Echvi_4202 at 5023.211 kb on + strand, within Echvi_4202 at 5023.233 kb on + strand, within Echvi_4202 at 5023.268 kb on - strand, within Echvi_4202 at 5023.290 kb on + strand, within Echvi_4202 at 5023.298 kb on + strand, within Echvi_4202 at 5023.298 kb on + strand, within Echvi_4202 at 5023.298 kb on + strand, within Echvi_4202 at 5023.298 kb on + strand, within Echvi_4202 at 5023.298 kb on + strand, within Echvi_4202 at 5023.298 kb on + strand, within Echvi_4202 at 5023.299 kb on - strand, within Echvi_4202 at 5023.299 kb on - strand, within Echvi_4202 at 5023.299 kb on - strand, within Echvi_4202 at 5023.335 kb on + strand, within Echvi_4202 at 5023.335 kb on + strand, within Echvi_4202 at 5023.335 kb on + strand, within Echvi_4202 at 5023.336 kb on - strand, within Echvi_4202 at 5023.336 kb on - strand, within Echvi_4202 at 5023.341 kb on + strand, within Echvi_4202 at 5023.342 kb on - strand, within Echvi_4202 at 5023.342 kb on - strand, within Echvi_4202 at 5023.363 kb on + strand, within Echvi_4202 at 5023.429 kb on - strand, within Echvi_4202 at 5023.436 kb on + strand, within Echvi_4202 at 5023.453 kb on - strand, within Echvi_4202 at 5023.530 kb on + strand at 5023.531 kb on - strand at 5023.586 kb on - strand at 5023.616 kb on + strand at 5023.617 kb on - strand at 5023.647 kb on - strand at 5023.662 kb on - strand at 5023.681 kb on + strand at 5023.682 kb on - strand at 5023.705 kb on + strand at 5023.706 kb on - strand at 5023.785 kb on + strand at 5023.862 kb on + strand at 5023.872 kb on + strand at 5023.872 kb on + strand at 5023.872 kb on + strand at 5023.892 kb on + strand at 5023.892 kb on + strand at 5023.892 kb on + strand at 5023.893 kb on - strand at 5024.078 kb on + strand, within Echvi_4203 at 5024.121 kb on + strand, within Echvi_4203 at 5024.121 kb on + strand, within Echvi_4203 at 5024.121 kb on + strand, within Echvi_4203 at 5024.121 kb on + strand, within Echvi_4203 at 5024.122 kb on - strand, within Echvi_4203 at 5024.130 kb on + strand, within Echvi_4203 at 5024.130 kb on + strand, within Echvi_4203 at 5024.130 kb on + strand, within Echvi_4203 at 5024.131 kb on - strand, within Echvi_4203 at 5024.131 kb on - strand, within Echvi_4203 at 5024.131 kb on - strand, within Echvi_4203 at 5024.131 kb on - strand, within Echvi_4203 at 5024.132 kb on + strand, within Echvi_4203 at 5024.133 kb on - strand, within Echvi_4203 at 5024.250 kb on - strand, within Echvi_4203 at 5024.312 kb on + strand, within Echvi_4203 at 5024.312 kb on + strand, within Echvi_4203 at 5024.313 kb on - strand, within Echvi_4203 at 5024.313 kb on - strand, within Echvi_4203 at 5024.313 kb on - strand, within Echvi_4203 at 5024.340 kb on + strand, within Echvi_4203 at 5024.341 kb on - strand, within Echvi_4203 at 5024.355 kb on + strand, within Echvi_4203 at 5024.356 kb on - strand, within Echvi_4203 at 5024.387 kb on - strand, within Echvi_4203 at 5024.387 kb on - strand, within Echvi_4203 at 5024.387 kb on - strand, within Echvi_4203 at 5024.391 kb on + strand, within Echvi_4203 at 5024.392 kb on - strand, within Echvi_4203 at 5024.398 kb on - strand, within Echvi_4203 at 5024.398 kb on - strand, within Echvi_4203 at 5024.399 kb on + strand, within Echvi_4203 at 5024.623 kb on - strand, within Echvi_4203
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 5,021,093 + Echvi_4201 0.84 -1.5 5,021,093 + Echvi_4201 0.84 +1.6 5,021,093 + Echvi_4201 0.84 +1.6 5,021,095 + Echvi_4201 0.84 +1.8 5,021,096 - Echvi_4201 0.84 -2.4 5,021,102 + Echvi_4201 0.84 +0.1 5,021,171 + Echvi_4201 0.86 +1.3 5,021,172 - Echvi_4201 0.86 -0.3 5,021,218 - Echvi_4201 0.87 -2.4 5,021,226 - Echvi_4201 0.87 -1.8 5,021,255 - Echvi_4201 0.87 +0.8 5,021,260 + Echvi_4201 0.88 +1.0 5,021,260 + Echvi_4201 0.88 +0.0 5,021,261 - Echvi_4201 0.88 -3.4 5,021,261 - Echvi_4201 0.88 -0.5 5,021,261 - Echvi_4201 0.88 -1.5 5,021,278 + Echvi_4201 0.88 -0.9 5,021,279 - Echvi_4201 0.88 -3.3 5,021,316 - Echvi_4201 0.89 +0.5 5,021,336 + Echvi_4201 0.89 +1.2 5,021,347 + Echvi_4201 0.90 -2.2 5,021,347 + Echvi_4201 0.90 +1.0 5,021,347 + Echvi_4201 0.90 +1.8 5,021,347 + Echvi_4201 0.90 +1.7 5,021,348 - Echvi_4201 0.90 +0.6 5,021,348 - Echvi_4201 0.90 +0.4 5,021,359 + Echvi_4201 0.90 -0.3 5,021,370 + +2.5 5,021,370 + -0.5 5,021,370 + +2.3 5,021,370 + -0.9 5,021,370 + -0.9 5,021,370 + +0.9 5,021,370 + +2.2 5,021,371 - -3.6 5,021,371 - +2.3 5,021,371 - -1.2 5,021,414 + +0.8 5,021,414 + +0.4 5,021,414 + -1.2 5,021,414 + +2.6 5,021,415 - +0.3 5,021,415 - +0.2 5,021,415 - -1.4 5,021,415 - -0.1 5,021,415 - +0.4 5,021,417 + +0.1 5,021,417 + -0.2 5,021,417 + -0.7 5,021,483 + -0.7 5,021,483 + -0.3 5,021,484 - +1.6 5,021,484 - +0.4 5,021,484 - +2.1 5,021,485 + -0.0 5,021,486 - +1.3 5,021,486 - +1.3 5,021,495 + -2.2 5,021,604 + -1.2 5,021,604 + +2.4 5,021,616 - +0.5 5,021,620 + +1.8 5,021,624 + +0.3 5,021,624 + +0.0 5,021,637 + +2.3 5,021,637 + +0.6 5,021,697 + -2.3 5,021,706 + +0.6 5,021,770 + -1.0 5,021,771 - +0.7 5,021,771 - +2.7 5,021,783 - -0.9 5,021,787 - -0.6 5,021,788 + -0.9 5,021,805 + -0.5 5,021,825 + -1.3 5,021,825 + -1.0 5,021,869 - +0.5 5,021,869 - +1.8 5,021,901 + +2.0 5,021,902 - +1.8 5,021,902 - +2.4 5,021,902 - -2.3 5,021,904 + +0.8 5,021,904 + +1.1 5,021,905 - -0.7 5,022,028 - -0.7 5,022,033 + -2.0 5,022,036 + +0.7 5,022,037 - +2.0 5,022,059 - -1.5 5,022,060 + -2.4 5,022,108 + -1.9 5,022,162 + +0.4 5,022,163 - -0.0 5,022,283 + Echvi_4202 0.17 +0.2 5,022,299 - Echvi_4202 0.18 +1.7 5,022,317 - Echvi_4202 0.19 +1.2 5,022,333 + Echvi_4202 0.20 +0.4 5,022,333 + Echvi_4202 0.20 -1.6 5,022,334 - Echvi_4202 0.20 +1.5 5,022,335 + Echvi_4202 0.20 +0.2 5,022,336 - Echvi_4202 0.20 +1.2 5,022,444 + Echvi_4202 0.27 +0.9 5,022,468 + Echvi_4202 0.28 +2.3 5,022,503 + Echvi_4202 0.31 -0.9 5,022,503 + Echvi_4202 0.31 -0.3 5,022,513 + Echvi_4202 0.31 +0.3 5,022,514 - Echvi_4202 0.31 +1.7 5,022,543 + Echvi_4202 0.33 +1.0 5,022,543 + Echvi_4202 0.33 -1.3 5,022,543 + Echvi_4202 0.33 +1.2 5,022,543 + Echvi_4202 0.33 +2.7 5,022,543 + Echvi_4202 0.33 -2.8 5,022,544 - Echvi_4202 0.33 -1.2 5,022,550 - Echvi_4202 0.33 -1.2 5,022,579 + Echvi_4202 0.35 -0.1 5,022,579 + Echvi_4202 0.35 +0.9 5,022,582 - Echvi_4202 0.35 +2.0 5,022,602 + Echvi_4202 0.37 +1.9 5,022,603 - Echvi_4202 0.37 +1.5 5,022,603 - Echvi_4202 0.37 +2.4 5,022,603 - Echvi_4202 0.37 +0.0 5,022,603 - Echvi_4202 0.37 +1.2 5,022,604 + Echvi_4202 0.37 -2.2 5,022,605 - Echvi_4202 0.37 -0.1 5,022,609 + Echvi_4202 0.37 +2.6 5,022,609 + Echvi_4202 0.37 +1.5 5,022,609 + Echvi_4202 0.37 -3.0 5,022,609 + Echvi_4202 0.37 +0.6 5,022,609 + Echvi_4202 0.37 +0.1 5,022,609 + Echvi_4202 0.37 +0.9 5,022,610 - Echvi_4202 0.37 +1.7 5,022,610 - Echvi_4202 0.37 +2.6 5,022,610 - Echvi_4202 0.37 +0.4 5,022,610 - Echvi_4202 0.37 -1.5 5,022,610 - Echvi_4202 0.37 +1.2 5,022,612 - Echvi_4202 0.37 +0.9 5,022,612 - Echvi_4202 0.37 +0.8 5,022,639 - Echvi_4202 0.39 -0.7 5,022,639 - Echvi_4202 0.39 +1.4 5,022,674 + Echvi_4202 0.41 -0.5 5,022,674 + Echvi_4202 0.41 -1.4 5,022,674 + Echvi_4202 0.41 -3.5 5,022,674 + Echvi_4202 0.41 -0.3 5,022,699 - Echvi_4202 0.43 -2.0 5,022,730 - Echvi_4202 0.44 +3.3 5,022,888 + Echvi_4202 0.54 +0.5 5,022,889 - Echvi_4202 0.54 +0.6 5,022,889 - Echvi_4202 0.54 -0.5 5,023,063 + Echvi_4202 0.65 -3.1 5,023,064 - Echvi_4202 0.65 -1.0 5,023,106 - Echvi_4202 0.67 +0.3 5,023,154 + Echvi_4202 0.70 -0.0 5,023,154 + Echvi_4202 0.70 -0.6 5,023,156 + Echvi_4202 0.70 -2.7 5,023,156 + Echvi_4202 0.70 +0.4 5,023,156 + Echvi_4202 0.70 +2.9 5,023,156 + Echvi_4202 0.70 +2.0 5,023,156 + Echvi_4202 0.70 +1.3 5,023,157 - Echvi_4202 0.70 +0.4 5,023,157 - Echvi_4202 0.70 +1.4 5,023,157 - Echvi_4202 0.70 +1.3 5,023,181 + Echvi_4202 0.72 +0.5 5,023,189 - Echvi_4202 0.72 -1.6 5,023,211 + Echvi_4202 0.74 +1.2 5,023,233 + Echvi_4202 0.75 -0.3 5,023,268 - Echvi_4202 0.77 -1.2 5,023,290 + Echvi_4202 0.79 -0.7 5,023,298 + Echvi_4202 0.79 -0.9 5,023,298 + Echvi_4202 0.79 +1.2 5,023,298 + Echvi_4202 0.79 -2.1 5,023,298 + Echvi_4202 0.79 +0.6 5,023,298 + Echvi_4202 0.79 +0.3 5,023,298 + Echvi_4202 0.79 -0.7 5,023,299 - Echvi_4202 0.79 +2.9 5,023,299 - Echvi_4202 0.79 -1.4 5,023,299 - Echvi_4202 0.79 -0.0 5,023,335 + Echvi_4202 0.81 +1.3 5,023,335 + Echvi_4202 0.81 -1.4 5,023,335 + Echvi_4202 0.81 +0.7 5,023,336 - Echvi_4202 0.81 +2.3 5,023,336 - Echvi_4202 0.81 +0.5 5,023,341 + Echvi_4202 0.82 -1.6 5,023,342 - Echvi_4202 0.82 +3.2 5,023,342 - Echvi_4202 0.82 -1.4 5,023,363 + Echvi_4202 0.83 -2.4 5,023,429 - Echvi_4202 0.87 +0.2 5,023,436 + Echvi_4202 0.87 +1.0 5,023,453 - Echvi_4202 0.88 -0.0 5,023,530 + -1.3 5,023,531 - +1.6 5,023,586 - -0.2 5,023,616 + -0.8 5,023,617 - -2.0 5,023,647 - +0.6 5,023,662 - +0.2 5,023,681 + +1.1 5,023,682 - +3.5 5,023,705 + +0.5 5,023,706 - +0.3 5,023,785 + -0.2 5,023,862 + -0.6 5,023,872 + +1.4 5,023,872 + -0.0 5,023,872 + -1.4 5,023,892 + +0.1 5,023,892 + -0.2 5,023,892 + -1.4 5,023,893 - -0.0 5,024,078 + Echvi_4203 0.12 -1.3 5,024,121 + Echvi_4203 0.14 -2.4 5,024,121 + Echvi_4203 0.14 +3.0 5,024,121 + Echvi_4203 0.14 +1.1 5,024,121 + Echvi_4203 0.14 +1.3 5,024,122 - Echvi_4203 0.14 +1.1 5,024,130 + Echvi_4203 0.14 +1.4 5,024,130 + Echvi_4203 0.14 +0.9 5,024,130 + Echvi_4203 0.14 +0.4 5,024,131 - Echvi_4203 0.14 -0.4 5,024,131 - Echvi_4203 0.14 -0.9 5,024,131 - Echvi_4203 0.14 -0.0 5,024,131 - Echvi_4203 0.14 +1.3 5,024,132 + Echvi_4203 0.14 -1.7 5,024,133 - Echvi_4203 0.14 +1.3 5,024,250 - Echvi_4203 0.17 +1.0 5,024,312 + Echvi_4203 0.19 +1.9 5,024,312 + Echvi_4203 0.19 +3.0 5,024,313 - Echvi_4203 0.19 -0.6 5,024,313 - Echvi_4203 0.19 -2.0 5,024,313 - Echvi_4203 0.19 +4.3 5,024,340 + Echvi_4203 0.20 -3.0 5,024,341 - Echvi_4203 0.20 -0.0 5,024,355 + Echvi_4203 0.21 +0.3 5,024,356 - Echvi_4203 0.21 +0.7 5,024,387 - Echvi_4203 0.21 -2.1 5,024,387 - Echvi_4203 0.21 +0.1 5,024,387 - Echvi_4203 0.21 +0.9 5,024,391 + Echvi_4203 0.22 -0.0 5,024,392 - Echvi_4203 0.22 +3.9 5,024,398 - Echvi_4203 0.22 +0.7 5,024,398 - Echvi_4203 0.22 +2.6 5,024,399 + Echvi_4203 0.22 -2.1 5,024,623 - Echvi_4203 0.28 -2.5
Or see this region's nucleotide sequence