Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4059 and Echvi_4060 are separated by 85 nucleotides Echvi_4060 and Echvi_4061 are separated by 340 nucleotides Echvi_4061 and Echvi_4062 are separated by 142 nucleotides
Echvi_4059: Echvi_4059 - Predicted glycosyltransferases, at 4,867,331 to 4,868,338
_4059
Echvi_4060: Echvi_4060 - DNA-binding protein, YbaB/EbfC family, at 4,868,424 to 4,868,759
_4060
Echvi_4061: Echvi_4061 - histidyl-tRNA synthetase, at 4,869,100 to 4,870,473
_4061
Echvi_4062: Echvi_4062 - hypothetical protein, at 4,870,616 to 4,870,825
_4062
Position (kb)
4869
4870
4871 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4868.742 kb on - strand at 4868.786 kb on + strand at 4868.787 kb on - strand at 4868.853 kb on - strand at 4868.854 kb on + strand at 4868.859 kb on + strand at 4868.862 kb on + strand at 4868.912 kb on + strand at 4868.913 kb on - strand at 4868.913 kb on - strand at 4868.951 kb on + strand at 4868.951 kb on + strand at 4868.952 kb on - strand at 4868.955 kb on + strand at 4868.956 kb on - strand at 4868.957 kb on + strand at 4868.957 kb on + strand at 4868.987 kb on - strand at 4869.079 kb on + strand at 4869.080 kb on - strand at 4869.084 kb on + strand at 4869.084 kb on + strand at 4869.084 kb on + strand at 4869.084 kb on + strand at 4869.085 kb on - strand at 4869.085 kb on - strand at 4869.085 kb on - strand at 4869.085 kb on - strand at 4869.085 kb on - strand at 4870.505 kb on - strand at 4870.602 kb on + strand at 4870.625 kb on + strand at 4870.663 kb on + strand, within Echvi_4062 at 4870.676 kb on - strand, within Echvi_4062 at 4870.736 kb on + strand, within Echvi_4062 at 4870.736 kb on + strand, within Echvi_4062 at 4870.737 kb on - strand, within Echvi_4062 at 4870.737 kb on - strand, within Echvi_4062 at 4870.763 kb on - strand, within Echvi_4062 at 4870.829 kb on + strand at 4870.829 kb on + strand at 4870.829 kb on + strand at 4870.829 kb on + strand at 4870.830 kb on - strand at 4870.839 kb on + strand at 4870.868 kb on + strand at 4870.977 kb on + strand at 4871.001 kb on + strand at 4871.021 kb on + strand at 4871.022 kb on - strand at 4871.025 kb on + strand at 4871.025 kb on + strand at 4871.025 kb on + strand at 4871.025 kb on + strand at 4871.025 kb on + strand at 4871.025 kb on + strand at 4871.025 kb on + strand at 4871.025 kb on + strand at 4871.025 kb on + strand at 4871.025 kb on + strand at 4871.027 kb on + strand at 4871.027 kb on + strand at 4871.037 kb on - strand at 4871.037 kb on - strand at 4871.065 kb on + strand at 4871.066 kb on - strand at 4871.072 kb on + strand at 4871.110 kb on - strand at 4871.115 kb on + strand at 4871.116 kb on - strand at 4871.116 kb on - strand at 4871.137 kb on + strand at 4871.137 kb on + strand at 4871.137 kb on + strand at 4871.137 kb on + strand at 4871.137 kb on + strand at 4871.138 kb on - strand at 4871.138 kb on - strand at 4871.138 kb on - strand at 4871.138 kb on - strand at 4871.138 kb on - strand at 4871.148 kb on - strand at 4871.158 kb on + strand at 4871.171 kb on + strand at 4871.172 kb on - strand at 4871.172 kb on - strand at 4871.177 kb on + strand at 4871.181 kb on + strand at 4871.181 kb on + strand at 4871.182 kb on - strand at 4871.182 kb on - strand at 4871.182 kb on - strand at 4871.182 kb on - strand at 4871.219 kb on + strand at 4871.220 kb on - strand at 4871.261 kb on + strand at 4871.287 kb on + strand at 4871.304 kb on + strand at 4871.305 kb on - strand at 4871.305 kb on - strand at 4871.317 kb on - strand at 4871.325 kb on + strand at 4871.325 kb on + strand at 4871.326 kb on - strand at 4871.335 kb on + strand at 4871.350 kb on - strand at 4871.354 kb on + strand at 4871.354 kb on + strand at 4871.358 kb on + strand at 4871.359 kb on - strand at 4871.359 kb on - strand at 4871.390 kb on + strand at 4871.391 kb on - strand at 4871.406 kb on + strand at 4871.446 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 4,868,742 - -0.6 4,868,786 + +1.3 4,868,787 - -0.6 4,868,853 - -1.1 4,868,854 + +2.0 4,868,859 + +4.0 4,868,862 + +1.1 4,868,912 + -0.1 4,868,913 - -2.9 4,868,913 - +0.9 4,868,951 + +2.6 4,868,951 + +0.0 4,868,952 - -1.1 4,868,955 + +3.0 4,868,956 - -1.4 4,868,957 + +1.4 4,868,957 + +0.2 4,868,987 - +2.2 4,869,079 + +2.9 4,869,080 - -0.3 4,869,084 + +1.5 4,869,084 + +1.6 4,869,084 + -1.6 4,869,084 + +2.4 4,869,085 - +0.2 4,869,085 - -1.1 4,869,085 - +0.6 4,869,085 - +1.1 4,869,085 - +0.3 4,870,505 - -0.3 4,870,602 + +0.2 4,870,625 + +0.4 4,870,663 + Echvi_4062 0.22 +1.3 4,870,676 - Echvi_4062 0.29 +1.0 4,870,736 + Echvi_4062 0.57 +2.2 4,870,736 + Echvi_4062 0.57 +1.7 4,870,737 - Echvi_4062 0.58 +1.9 4,870,737 - Echvi_4062 0.58 +1.6 4,870,763 - Echvi_4062 0.70 +0.7 4,870,829 + -2.1 4,870,829 + -1.6 4,870,829 + -2.0 4,870,829 + +1.5 4,870,830 - -2.1 4,870,839 + +3.3 4,870,868 + +0.5 4,870,977 + +0.9 4,871,001 + +0.1 4,871,021 + -0.8 4,871,022 - +0.8 4,871,025 + -1.2 4,871,025 + -3.3 4,871,025 + -1.5 4,871,025 + -1.0 4,871,025 + +1.3 4,871,025 + +0.6 4,871,025 + +0.1 4,871,025 + +0.2 4,871,025 + +1.4 4,871,025 + +1.7 4,871,027 + -2.4 4,871,027 + -2.0 4,871,037 - -2.0 4,871,037 - -0.4 4,871,065 + +2.0 4,871,066 - -1.0 4,871,072 + -1.1 4,871,110 - -1.6 4,871,115 + +1.5 4,871,116 - +1.1 4,871,116 - -2.7 4,871,137 + -2.4 4,871,137 + -1.3 4,871,137 + -1.6 4,871,137 + +0.6 4,871,137 + +2.9 4,871,138 - -2.6 4,871,138 - +1.1 4,871,138 - -2.1 4,871,138 - +1.2 4,871,138 - +0.5 4,871,148 - +1.1 4,871,158 + +1.2 4,871,171 + +0.7 4,871,172 - -2.4 4,871,172 - +0.9 4,871,177 + +2.8 4,871,181 + +1.1 4,871,181 + +0.3 4,871,182 - -2.3 4,871,182 - +1.5 4,871,182 - +0.1 4,871,182 - -1.8 4,871,219 + +1.1 4,871,220 - -0.8 4,871,261 + +2.7 4,871,287 + -1.6 4,871,304 + -1.0 4,871,305 - -1.8 4,871,305 - +0.5 4,871,317 - +2.3 4,871,325 + -0.1 4,871,325 + -0.6 4,871,326 - -1.0 4,871,335 + +0.3 4,871,350 - -0.6 4,871,354 + -0.1 4,871,354 + +1.5 4,871,358 + -2.4 4,871,359 - +1.2 4,871,359 - +0.4 4,871,390 + +1.9 4,871,391 - +1.0 4,871,406 + +2.6 4,871,446 - +2.2
Or see this region's nucleotide sequence