Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2531 and Echvi_2532 are separated by 121 nucleotides Echvi_2532 and Echvi_2533 are separated by 8 nucleotides Echvi_2533 and Echvi_2534 are separated by 95 nucleotides
Echvi_2531: Echvi_2531 - aconitate hydratase, mitochondrial, at 3,005,645 to 3,007,918
_2531
Echvi_2532: Echvi_2532 - hypothetical protein, at 3,008,040 to 3,008,630
_2532
Echvi_2533: Echvi_2533 - Protein of unknown function (DUF2490)., at 3,008,639 to 3,009,358
_2533
Echvi_2534: Echvi_2534 - Signal transduction histidine kinase, at 3,009,454 to 3,011,346
_2534
Position (kb)
3008
3009
3010 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3007.917 kb on - strand at 3007.927 kb on - strand at 3008.024 kb on + strand at 3008.024 kb on + strand at 3008.189 kb on + strand, within Echvi_2532 at 3008.190 kb on - strand, within Echvi_2532 at 3008.227 kb on - strand, within Echvi_2532 at 3008.247 kb on - strand, within Echvi_2532 at 3008.259 kb on + strand, within Echvi_2532 at 3008.259 kb on + strand, within Echvi_2532 at 3008.259 kb on + strand, within Echvi_2532 at 3008.260 kb on - strand, within Echvi_2532 at 3008.262 kb on - strand, within Echvi_2532 at 3008.262 kb on - strand, within Echvi_2532 at 3008.279 kb on - strand, within Echvi_2532 at 3008.279 kb on - strand, within Echvi_2532 at 3008.287 kb on + strand, within Echvi_2532 at 3008.305 kb on + strand, within Echvi_2532 at 3008.306 kb on - strand, within Echvi_2532 at 3008.309 kb on + strand, within Echvi_2532 at 3008.327 kb on - strand, within Echvi_2532 at 3008.361 kb on + strand, within Echvi_2532 at 3008.444 kb on + strand, within Echvi_2532 at 3008.444 kb on + strand, within Echvi_2532 at 3008.445 kb on - strand, within Echvi_2532 at 3008.445 kb on - strand, within Echvi_2532 at 3008.462 kb on + strand, within Echvi_2532 at 3008.462 kb on + strand, within Echvi_2532 at 3008.462 kb on + strand, within Echvi_2532 at 3008.463 kb on - strand, within Echvi_2532 at 3008.477 kb on + strand, within Echvi_2532 at 3008.478 kb on - strand, within Echvi_2532 at 3008.478 kb on - strand, within Echvi_2532 at 3008.478 kb on - strand, within Echvi_2532 at 3008.489 kb on + strand, within Echvi_2532 at 3008.499 kb on + strand, within Echvi_2532 at 3008.499 kb on + strand, within Echvi_2532 at 3008.499 kb on + strand, within Echvi_2532 at 3008.500 kb on - strand, within Echvi_2532 at 3008.501 kb on + strand, within Echvi_2532 at 3008.502 kb on - strand, within Echvi_2532 at 3008.562 kb on - strand at 3008.597 kb on - strand at 3008.676 kb on + strand at 3008.686 kb on + strand at 3008.710 kb on + strand at 3008.711 kb on - strand, within Echvi_2533 at 3008.711 kb on - strand, within Echvi_2533 at 3008.711 kb on - strand, within Echvi_2533 at 3008.741 kb on + strand, within Echvi_2533 at 3008.741 kb on + strand, within Echvi_2533 at 3008.742 kb on - strand, within Echvi_2533 at 3008.742 kb on - strand, within Echvi_2533 at 3008.742 kb on - strand, within Echvi_2533 at 3008.742 kb on - strand, within Echvi_2533 at 3008.742 kb on - strand, within Echvi_2533 at 3008.743 kb on + strand at 3008.743 kb on + strand, within Echvi_2533 at 3008.744 kb on - strand, within Echvi_2533 at 3008.744 kb on - strand, within Echvi_2533 at 3008.744 kb on - strand, within Echvi_2533 at 3008.747 kb on + strand, within Echvi_2533 at 3008.780 kb on - strand, within Echvi_2533 at 3008.786 kb on + strand, within Echvi_2533 at 3008.787 kb on - strand, within Echvi_2533 at 3008.787 kb on - strand, within Echvi_2533 at 3008.787 kb on - strand, within Echvi_2533 at 3008.921 kb on + strand, within Echvi_2533 at 3008.926 kb on + strand, within Echvi_2533 at 3008.945 kb on + strand, within Echvi_2533 at 3008.946 kb on - strand, within Echvi_2533 at 3008.971 kb on + strand, within Echvi_2533 at 3008.971 kb on + strand, within Echvi_2533 at 3008.972 kb on - strand, within Echvi_2533 at 3008.972 kb on - strand, within Echvi_2533 at 3009.005 kb on - strand, within Echvi_2533 at 3009.036 kb on + strand, within Echvi_2533 at 3009.037 kb on - strand, within Echvi_2533 at 3009.076 kb on - strand, within Echvi_2533 at 3009.143 kb on + strand, within Echvi_2533 at 3009.144 kb on - strand, within Echvi_2533 at 3009.148 kb on - strand, within Echvi_2533 at 3009.159 kb on - strand, within Echvi_2533 at 3009.238 kb on + strand, within Echvi_2533 at 3009.238 kb on + strand, within Echvi_2533 at 3009.239 kb on - strand, within Echvi_2533 at 3009.242 kb on + strand, within Echvi_2533 at 3009.242 kb on + strand, within Echvi_2533 at 3009.243 kb on - strand, within Echvi_2533 at 3009.257 kb on - strand, within Echvi_2533 at 3009.281 kb on + strand, within Echvi_2533 at 3009.284 kb on + strand, within Echvi_2533 at 3009.284 kb on + strand, within Echvi_2533 at 3009.285 kb on - strand, within Echvi_2533 at 3009.285 kb on - strand, within Echvi_2533 at 3009.442 kb on + strand at 3009.447 kb on + strand at 3009.516 kb on + strand at 3009.538 kb on + strand at 3009.538 kb on + strand at 3009.539 kb on - strand at 3009.539 kb on - strand at 3009.540 kb on + strand at 3009.559 kb on - strand at 3009.559 kb on - strand at 3009.569 kb on - strand at 3009.579 kb on - strand at 3009.585 kb on + strand at 3009.586 kb on - strand at 3009.590 kb on + strand at 3009.657 kb on - strand, within Echvi_2534 at 3009.660 kb on + strand, within Echvi_2534 at 3009.690 kb on + strand, within Echvi_2534 at 3009.701 kb on + strand, within Echvi_2534 at 3009.753 kb on + strand, within Echvi_2534 at 3009.756 kb on + strand, within Echvi_2534 at 3009.816 kb on - strand, within Echvi_2534 at 3009.967 kb on - strand, within Echvi_2534 at 3010.101 kb on + strand, within Echvi_2534 at 3010.122 kb on + strand, within Echvi_2534 at 3010.122 kb on + strand, within Echvi_2534 at 3010.123 kb on - strand, within Echvi_2534 at 3010.128 kb on - strand, within Echvi_2534 at 3010.129 kb on + strand, within Echvi_2534 at 3010.135 kb on + strand, within Echvi_2534 at 3010.143 kb on + strand, within Echvi_2534 at 3010.143 kb on + strand, within Echvi_2534 at 3010.143 kb on + strand, within Echvi_2534 at 3010.148 kb on + strand, within Echvi_2534 at 3010.148 kb on + strand, within Echvi_2534 at 3010.149 kb on - strand, within Echvi_2534 at 3010.154 kb on + strand, within Echvi_2534 at 3010.155 kb on - strand, within Echvi_2534 at 3010.237 kb on - strand, within Echvi_2534 at 3010.249 kb on - strand, within Echvi_2534 at 3010.249 kb on - strand, within Echvi_2534 at 3010.350 kb on + strand, within Echvi_2534
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 3,007,917 - +0.4 3,007,927 - +0.4 3,008,024 + +0.8 3,008,024 + -0.2 3,008,189 + Echvi_2532 0.25 -1.7 3,008,190 - Echvi_2532 0.25 -0.4 3,008,227 - Echvi_2532 0.32 -0.7 3,008,247 - Echvi_2532 0.35 -0.8 3,008,259 + Echvi_2532 0.37 +0.6 3,008,259 + Echvi_2532 0.37 +0.0 3,008,259 + Echvi_2532 0.37 +0.3 3,008,260 - Echvi_2532 0.37 -1.1 3,008,262 - Echvi_2532 0.38 +2.2 3,008,262 - Echvi_2532 0.38 -1.7 3,008,279 - Echvi_2532 0.40 +0.2 3,008,279 - Echvi_2532 0.40 -0.4 3,008,287 + Echvi_2532 0.42 +2.2 3,008,305 + Echvi_2532 0.45 -0.6 3,008,306 - Echvi_2532 0.45 -2.0 3,008,309 + Echvi_2532 0.46 -0.8 3,008,327 - Echvi_2532 0.49 -2.6 3,008,361 + Echvi_2532 0.54 +1.2 3,008,444 + Echvi_2532 0.68 +1.0 3,008,444 + Echvi_2532 0.68 -1.6 3,008,445 - Echvi_2532 0.69 +3.9 3,008,445 - Echvi_2532 0.69 -0.8 3,008,462 + Echvi_2532 0.71 -2.5 3,008,462 + Echvi_2532 0.71 -0.3 3,008,462 + Echvi_2532 0.71 -1.9 3,008,463 - Echvi_2532 0.72 -1.6 3,008,477 + Echvi_2532 0.74 +1.3 3,008,478 - Echvi_2532 0.74 +2.8 3,008,478 - Echvi_2532 0.74 +1.1 3,008,478 - Echvi_2532 0.74 +2.8 3,008,489 + Echvi_2532 0.76 -1.7 3,008,499 + Echvi_2532 0.78 +0.4 3,008,499 + Echvi_2532 0.78 +0.2 3,008,499 + Echvi_2532 0.78 +1.7 3,008,500 - Echvi_2532 0.78 -0.4 3,008,501 + Echvi_2532 0.78 -0.7 3,008,502 - Echvi_2532 0.78 +0.8 3,008,562 - +0.2 3,008,597 - +2.2 3,008,676 + +0.7 3,008,686 + -2.2 3,008,710 + -2.2 3,008,711 - Echvi_2533 0.10 +0.1 3,008,711 - Echvi_2533 0.10 -2.0 3,008,711 - Echvi_2533 0.10 +0.3 3,008,741 + Echvi_2533 0.14 +1.1 3,008,741 + Echvi_2533 0.14 +0.9 3,008,742 - Echvi_2533 0.14 -0.2 3,008,742 - Echvi_2533 0.14 -0.8 3,008,742 - Echvi_2533 0.14 -1.0 3,008,742 - Echvi_2533 0.14 -1.1 3,008,742 - Echvi_2533 0.14 +2.5 3,008,743 + +2.2 3,008,743 + Echvi_2533 0.14 -3.4 3,008,744 - Echvi_2533 0.15 +1.2 3,008,744 - Echvi_2533 0.15 +2.2 3,008,744 - Echvi_2533 0.15 -0.6 3,008,747 + Echvi_2533 0.15 +0.7 3,008,780 - Echvi_2533 0.20 +2.6 3,008,786 + Echvi_2533 0.20 -1.2 3,008,787 - Echvi_2533 0.21 +0.9 3,008,787 - Echvi_2533 0.21 -0.4 3,008,787 - Echvi_2533 0.21 +1.0 3,008,921 + Echvi_2533 0.39 -2.5 3,008,926 + Echvi_2533 0.40 -0.1 3,008,945 + Echvi_2533 0.42 +0.1 3,008,946 - Echvi_2533 0.43 -2.2 3,008,971 + Echvi_2533 0.46 -2.4 3,008,971 + Echvi_2533 0.46 +1.0 3,008,972 - Echvi_2533 0.46 -1.5 3,008,972 - Echvi_2533 0.46 -1.0 3,009,005 - Echvi_2533 0.51 +0.9 3,009,036 + Echvi_2533 0.55 -2.5 3,009,037 - Echvi_2533 0.55 +1.8 3,009,076 - Echvi_2533 0.61 +1.5 3,009,143 + Echvi_2533 0.70 +0.6 3,009,144 - Echvi_2533 0.70 +3.4 3,009,148 - Echvi_2533 0.71 +2.6 3,009,159 - Echvi_2533 0.72 +1.0 3,009,238 + Echvi_2533 0.83 +2.8 3,009,238 + Echvi_2533 0.83 +0.1 3,009,239 - Echvi_2533 0.83 +0.8 3,009,242 + Echvi_2533 0.84 +3.5 3,009,242 + Echvi_2533 0.84 +3.2 3,009,243 - Echvi_2533 0.84 -1.3 3,009,257 - Echvi_2533 0.86 -1.6 3,009,281 + Echvi_2533 0.89 -1.3 3,009,284 + Echvi_2533 0.90 -0.6 3,009,284 + Echvi_2533 0.90 +0.4 3,009,285 - Echvi_2533 0.90 +0.9 3,009,285 - Echvi_2533 0.90 +0.9 3,009,442 + -1.1 3,009,447 + +1.0 3,009,516 + -1.0 3,009,538 + -1.5 3,009,538 + +0.6 3,009,539 - +0.9 3,009,539 - -0.1 3,009,540 + -3.0 3,009,559 - -2.4 3,009,559 - -2.2 3,009,569 - +1.0 3,009,579 - +1.6 3,009,585 + +0.6 3,009,586 - +1.3 3,009,590 + +5.5 3,009,657 - Echvi_2534 0.11 -0.1 3,009,660 + Echvi_2534 0.11 +0.6 3,009,690 + Echvi_2534 0.12 -1.7 3,009,701 + Echvi_2534 0.13 -0.4 3,009,753 + Echvi_2534 0.16 +0.9 3,009,756 + Echvi_2534 0.16 +2.8 3,009,816 - Echvi_2534 0.19 -2.7 3,009,967 - Echvi_2534 0.27 +1.1 3,010,101 + Echvi_2534 0.34 +1.6 3,010,122 + Echvi_2534 0.35 -1.0 3,010,122 + Echvi_2534 0.35 +0.1 3,010,123 - Echvi_2534 0.35 +0.2 3,010,128 - Echvi_2534 0.36 -3.4 3,010,129 + Echvi_2534 0.36 -1.5 3,010,135 + Echvi_2534 0.36 -1.2 3,010,143 + Echvi_2534 0.36 -2.2 3,010,143 + Echvi_2534 0.36 -2.3 3,010,143 + Echvi_2534 0.36 +2.3 3,010,148 + Echvi_2534 0.37 -3.7 3,010,148 + Echvi_2534 0.37 +1.2 3,010,149 - Echvi_2534 0.37 +0.2 3,010,154 + Echvi_2534 0.37 +1.1 3,010,155 - Echvi_2534 0.37 -2.6 3,010,237 - Echvi_2534 0.41 -0.5 3,010,249 - Echvi_2534 0.42 +1.1 3,010,249 - Echvi_2534 0.42 +2.3 3,010,350 + Echvi_2534 0.47 +1.4
Or see this region's nucleotide sequence