Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2427 and Echvi_2428 are separated by 63 nucleotides Echvi_2428 and Echvi_2429 are separated by 88 nucleotides Echvi_2429 and Echvi_2430 are separated by 76 nucleotides
Echvi_2427: Echvi_2427 - ATP-dependent metalloprotease FtsH, at 2,878,197 to 2,880,242
_2427
Echvi_2428: Echvi_2428 - iojap-like ribosome-associated protein, at 2,880,306 to 2,880,653
_2428
Echvi_2429: Echvi_2429 - birA, biotin-[acetyl-CoA-carboxylase] ligase region, at 2,880,742 to 2,881,500
_2429
Echvi_2430: Echvi_2430 - adenosylhomocysteinase, at 2,881,577 to 2,882,893
_2430
Position (kb)
2880
2881 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2880.369 kb on - strand, within Echvi_2428 at 2880.404 kb on - strand, within Echvi_2428 at 2880.404 kb on - strand, within Echvi_2428 at 2880.622 kb on - strand at 2880.633 kb on - strand at 2880.673 kb on - strand at 2880.704 kb on - strand at 2880.719 kb on - strand at 2880.729 kb on - strand at 2880.733 kb on - strand at 2880.790 kb on + strand at 2881.479 kb on + strand at 2881.510 kb on + strand at 2881.511 kb on - strand at 2881.536 kb on + strand at 2881.570 kb on + strand at 2881.574 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 2,880,369 - Echvi_2428 0.18 -1.1 2,880,404 - Echvi_2428 0.28 -1.4 2,880,404 - Echvi_2428 0.28 -2.1 2,880,622 - -0.8 2,880,633 - -2.5 2,880,673 - -1.8 2,880,704 - +1.6 2,880,719 - -0.4 2,880,729 - -2.1 2,880,733 - +1.2 2,880,790 + +0.2 2,881,479 + +0.1 2,881,510 + +0.3 2,881,511 - -2.2 2,881,536 + +0.2 2,881,570 + -1.1 2,881,574 + +2.0
Or see this region's nucleotide sequence