Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2400 and Echvi_2401 are separated by 241 nucleotides Echvi_2401 and Echvi_2402 are separated by 72 nucleotides Echvi_2402 and Echvi_2403 overlap by 4 nucleotides
Echvi_2400: Echvi_2400 - CTP synthase, at 2,841,912 to 2,843,534
_2400
Echvi_2401: Echvi_2401 - hypothetical protein, at 2,843,776 to 2,844,039
_2401
Echvi_2402: Echvi_2402 - hypothetical protein, at 2,844,112 to 2,844,579
_2402
Echvi_2403: Echvi_2403 - tRNA nucleotidyltransferase/poly(A) polymerase, at 2,844,576 to 2,846,006
_2403
Position (kb)
2843
2844
2845 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2843.639 kb on - strand at 2843.712 kb on + strand at 2843.758 kb on + strand at 2843.778 kb on - strand at 2843.796 kb on + strand at 2843.824 kb on + strand, within Echvi_2401 at 2843.858 kb on - strand, within Echvi_2401 at 2843.907 kb on + strand, within Echvi_2401 at 2843.910 kb on + strand at 2843.911 kb on - strand, within Echvi_2401 at 2843.911 kb on - strand, within Echvi_2401 at 2844.042 kb on - strand at 2844.064 kb on - strand at 2844.308 kb on + strand, within Echvi_2402 at 2844.308 kb on + strand, within Echvi_2402 at 2844.337 kb on + strand, within Echvi_2402 at 2844.339 kb on + strand, within Echvi_2402 at 2844.339 kb on + strand, within Echvi_2402 at 2844.564 kb on - strand at 2844.564 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 2,843,639 - -1.9 2,843,712 + +1.2 2,843,758 + -0.6 2,843,778 - -0.4 2,843,796 + -2.2 2,843,824 + Echvi_2401 0.18 -1.6 2,843,858 - Echvi_2401 0.31 -1.0 2,843,907 + Echvi_2401 0.50 +1.2 2,843,910 + +1.2 2,843,911 - Echvi_2401 0.51 -2.1 2,843,911 - Echvi_2401 0.51 +1.2 2,844,042 - +0.6 2,844,064 - -0.5 2,844,308 + Echvi_2402 0.42 +2.2 2,844,308 + Echvi_2402 0.42 +1.4 2,844,337 + Echvi_2402 0.48 -2.7 2,844,339 + Echvi_2402 0.49 +0.6 2,844,339 + Echvi_2402 0.49 +1.8 2,844,564 - +0.3 2,844,564 - -0.1
Or see this region's nucleotide sequence